Search results for "pattern"

DNA Origami-Mediated Substrate Nanopatterning of Inorganic Structures for Sensing Applications

2019

Structural DNA nanotechnology provides a viable route for building from the bottom-up using DNA as construction material. The most common DNA nanofabrication technique is called DNA origami, and it allows high-throughput synthesis of accurate and highly versatile structures with nanometer-level precision. Here, it is shown how the spatial information of DNA origami can be transferred to metallic nanostructures by combining the bottom-up DNA origami with the conventionally used top-down lithography approaches. This allows fabrication of billions of tiny nanostructures in one step onto selected substrates. The method is demonstrated using bowtie DNA origami to create metallic bowtie-shaped an…

Influence of a nonlinear coupling on the supratransmission effect in modified sine-Gordon and Klein–Gordon lattices

2017

International audience; In this paper, we analyze the conditions leading to the nonlinear supratransmission phenomenon in two different models: a modified fifth order Klein–Gordon system and a modified sine-Gordon system. The modified models considered here are those with mixed coupling, the pure linear coupling being associated with a nonlinear coupling. Especially, we numerically quantify the influence of the nonlinear coupling coefficient on the threshold amplitude which triggers the nonlinear supratransmission phenomenon. Our main result shows that, in both models, when the nonlinear coupling coefficient increases, the threshold amplitude triggering the nonlinear supratransmission pheno…

Irregular motion recovery in fluorescein angiograms

1997

Abstract Fluorescein angiography is a common procedure in ophthalmic practice, mainly to evaluate vascular retinopathies and choroidopathies from sequences of ocular fundus images. In order to compare the images, a reliable overlying is essential. This paper proposes some methods for the recovery of irregular motion in fluorescein angiograms (FA). The overlying is done by a three step procedure: detection of relevant points, matching points from different images and estimation of the assumed linear geometric transformation. A stochastic model (closely related to the general linear model) allows to fuse the second and third steps. Two different estimators of the geometric transformation are …

2014

This paper investigates the proficiency of support vector machine (SVM) using datasets generated by Tennessee Eastman process simulation for fault detection. Due to its excellent performance in generalization, the classification performance of SVM is satisfactory. SVM algorithm combined with kernel function has the nonlinear attribute and can better handle the case where samples and attributes are massive. In addition, with forehand optimizing the parameters using the cross-validation technique, SVM can produce high accuracy in fault detection. Therefore, there is no need to deal with original data or refer to other algorithms, making the classification problem simple to handle. In order to…

Order statistics-based parametric classification for multi-dimensional distributions

2013

Traditionally, in the field of Pattern Recognition (PR), the moments of the class-conditional densities of the respective classes have been used to perform classification. However, the use of phenomena that utilized the properties of the Order Statistics (OS) were not reported. Recently, in [10,8], we proposed a new paradigm named CMOS, Classification by the Moments of Order Statistics, which specifically used these quantifiers. It is fascinating that CMOS is essentially ''anti''-Bayesian in its nature because the classification is performed in a counter-intuitive manner, i.e., by comparing the testing sample to a few samples distant from the mean, as opposed to the Bayesian approach in whi…

Network dynamics of eukaryotic LTR retroelements beyond phylogenetic trees

2009

Abstract Background Sequencing projects have allowed diverse retroviruses and LTR retrotransposons from different eukaryotic organisms to be characterized. It is known that retroviruses and other retro-transcribing viruses evolve from LTR retrotransposons and that this whole system clusters into five families: Ty3/Gypsy, Retroviridae, Ty1/Copia, Bel/Pao and Caulimoviridae. Phylogenetic analyses usually show that these split into multiple distinct lineages but what is yet to be understood is how deep evolution occurred in this system. Results We combined phylogenetic and graph analyses to investigate the history of LTR retroelements both as a tree and as a network. We used 268 non-redundant …

optomotor-blind suppresses instability at the A/P compartment boundary of the Drosophila wing.

2008

Formation and function of the A/P compartment boundary of the Drosophila wing have been studied intensely. The boundary prevents mingling of A and P cells, is characterized by an expression discontinuity of several genes like engrailed, Cubitus interruptus, hedgehog and decapentaplegic and is essential for patterning the wing. Compared with segmental or compartmental boundaries in several other systems which generally manifest as folds or clefts, the wing A/P boundary is morphologically inconspicuous in both the larval and adult stage. We show here that the Drosophila wing A/P boundary, too, is susceptible to fold and cleft formation and that these processes are suppressed by the T-box tran…

Recognition of Specified RNA Modifications by the Innate Immune System

2015

Microbial nucleic acids have been described as important activators of human innate immune responses by triggering so-called pattern recognition receptors (PRRs) that are expressed on innate immune cells, including plasmacytoid dendritic cells and monocytes. Although host and microbial nucleic acids share pronounced chemical and structural similarities, they significantly differ in their posttranscriptional modification profile, allowing the host to discriminate between self and nonself. In this regard, ribose 2'-O-methylation has been discovered as suppressor of RNA-induced PRR activation. Although 2'-O-methylation occurs with higher frequencies in eukaryotic than in prokaryotic RNA, the i…

CellLineNavigator: a workbench for cancer cell line analysis

2012

The CellLineNavigator database, freely available at http://www.medicalgenomics.org/celllinenavigator, is a web-based workbench for large scale comparisons of a large collection of diverse cell lines. It aims to support experimental design in the fields of genomics, systems biology and translational biomedical research. Currently, this compendium holds genome wide expression profiles of 317 different cancer cell lines, categorized into 57 different pathological states and 28 individual tissues. To enlarge the scope of CellLineNavigator, the database was furthermore closely linked to commonly used bioinformatics databases and knowledge repositories. To ensure easy data access and search abili…

SEQPACKER: A Biologist-Friendly User Interface to Manipulate Nucleotide Sequences in Genomic Epidemiology

2004

The aim of this paper is to present a new integrated bioinformatics tool for manipulating nucleotide sequences with a user-friendly graphical interface. This tool is named “SeqPacker” because it uses DNA/RNA sequences. In addition, SeqPacker can be seen as a kind of nucleotide chain editor using standardized technologies, nucleotide representation standards, and high platform portability in support of research in Genomic Epidemiology. SeqPacker is written in JAVA as free and stand-alone software for several computer platforms.