Search results for "phylogenetic"
showing 10 items of 1179 documents
The Phylogenetic position of Daubentonia madagascariensis (Gmelin, 1788; primates, Strepsirhini) as revealed by chromosomal analysis
2012
One of the major topics in primate evolution is the phylogenetic position of the bizarre Daubentonia madagascariensis (DMA, aye-aye). The principal points that have been discussed for many decades are whether the aye-aye is: (i) the sister group of primates; (ii) the sister group of strepsirhines; or (iii) the sister group of lemurs. Very little is known about Daubentonia evolution, particularly on the chromosomal background. The present report focuses on the chromosomal history of this species. We used available chromosome painting data as the main source to identify conserved chromosomes, chromosomal segments and syntenic associations that have characterized the aye-aye karyotype. The dat…
Walter Zimmermann and the Growth of Phylogenetic Theory
1992
seminal theoretical paper, "Arbeitsweise der botanischen Phylogenetik und anderer Gruppierungswissenschaften" ("Methods of botanical phylogenetics and other grouping sciences"), first published in 1931. In this paper, Zimmermann clearly ex? pressed many of the underlying principles of phylogenetic systematics?ideas that were later taken up by Hennig and formed the core of his theory. Zimmermann also focused attention on several basic meth?
Testing reticulate versus coalescent origins of Erica lusitanica using a species phylogeny of the northern heathers (Ericeae, Ericaceae).
2015
Whilst most of the immense species richness of heathers (Calluna, Daboecia and Erica: Ericeae; Ericaceae) is endemic to Africa, particularly the Cape Floristic Region, the oldest lineages are found in the Northern Hemisphere. We present phylogenetic hypotheses for the major clades of Ericeae represented by multiple accessions of all northern Erica species and placeholder taxa for the large nested African/Madagascan clade. We identified consistent, strongly supported conflict between gene trees inferred from ITS and chloroplast DNA sequences with regard to the position of Erica lusitanica. We used coalescent simulations to test whether this conflict could be explained by coalescent stochasti…
Assessing divergence time of Spirulida and Sepiida (Cephalopoda) based on hemocyanin sequences
2011
Abstract The phylogenetic position of the mesopelagic decabrachian cephalopod Spirula is still a matter of debate. Since hemocyanin has successfully been used to calibrate a molecular clock for many molluscan species, a molecular clock was calculated based on this gene with special attention to the cephalopod genera Spirula and Sepia. The obtained partial sequence comprising ca., one third (3567 bp) of the complete gene is similar to that of Sepia officinalis. The molecular clock was calibrated using the splits of Gastropoda–Cephalopoda (ca. 550 ± 50 mya) and Heterobranchia–Vetigastropoda (ca. 380 ± 10 mya). The resulting hemocyanin-based molecular clock is stable, and the estimated diverge…
Ontogenetic and phylogenetic diversification of the hooded staminode in Marantaceae
2010
The flowers of Marantaceae are known for their unique pollination mechanism mediated by an explosive style movement. The mechanism is based on the highly modified elements of the inner androecial whorl, i.e., the single half-fertile anther and the fleshy and hooded staminodes. We investigated 67 species across 24 genera to elucidate which parts of the hooded staminode are shared by all species, thus likely under strong selection pressure, and which are allowed to vary. We treated hooded staminodes as character syndromes and grouped them based on gross similarities. We identified characters underlying the similarity and investigated their diversity and developmental pathways. All hooded stam…
2006
We describe for the first time the radial sesamoid or “false thumb” of the spectacled bear (Tremarctos ornatus), showing its great morphological similarities with that of the giant panda (Ailuropoda melanoleuca) and the differences with that of the rest of the Ursidae. This points to the existence of a common origin for this structure in both species, but considering the accepted phylogenies of ursids, the sharing of a “false thumb” in T. ornatus and A. melanoleuca would be a plesiomorphy for these groups, whereas in the rest of the ursids the radial sesamoid was probably reduced, lacking the specialised function that this bone has in Tremarctinae and Ailuropodinae.
Classification of Primula sect. Auricula (Primulaceae) based on two molecular data sets (ITS, AFLPs), morphology and geographical distribution
2004
On the basis of the study of c. 1100 herbarium specimens, field observations and molecular (ITS, AFLPs) evidence, Primula sect. Auricula is classified into two subsections, 25 species and six subspecies. Primula auricula L. ssp. widmerae (Pax) L. B. Zhang stat. nov., P. auricula Linn. ssp. tatriaca L. B. Zhang ssp. nov., and P. latifolia Lapeyr. ssp. cynoglossifolia (Widmer) L. B. Zhang stat. nov. are newly described or combined; P. auricula s.l. is divided into two species: P. auricula Linn. and P. balbisii Lehm., representing the northern and the southern populations of P. auricula s.l. resolved in the molecular study, respectively; P. cottia Widmer and P. balbisii Lehm. are recovered fro…
A new combination in Mononeuria (Caryophyllaceae)
2018
The nomenclatural change Mononeuria caroliniana comb. nov. is proposed on the basis of molecular phylogenetic results analyzing the nuclear internal transcribed spacer.
Phylogenetic relationships among Flavescence doree strains and related phytoplasmas determined by heteroduplex mobility assay and sequence of ribosom…
2003
Heteroduplex mobility assay (HMA) and DNA sequencing were performed on Flavescence doree (FD) phytoplasma strains and related phytoplasmas belonging to the elm yellows group. Part of the ribosomal RNA gene operon and a nonribosomal DNA region were utilized for phylogenetic analyses. Two FD strains, FD92 and FD-D, detected in France and Italy, respectively, were identical in both DNA fragments, confirming previous results. Other FD strains were all very similar and most closely resembled ALY, an Italian alder phytoplasma. Phytoplasmas associated with German Palatinate grapevine yellows were shown to form a distinct subcluster, also different from the elm yellows phytoplasma subcluster. Strai…