Search results for "phylogeny"

showing 10 items of 1398 documents

A new Lagomorph from the late Miocene of Chad (central Africa)

2007

A new species of the genus Serengetilagus, here named S. tchadensis n. sp., is described from Toros Menalla deposits, Late Miocene of Djurab Erg (North Chad, central Africa). It shows primitive features, such as a simple archaeolagine-type p3, with only two main external folds, and upper cheek teeth strongly widened with wear. Its size and skeletal features resemble S. praecapensis from the Middle Pliocene of Laetoli (Tanzania). They differ in several cranial and dental features (choanae width, zygoma, orbits, basicranial-basifacial angle, lack of hypoflexus in P2, short and asymmetric hypoflexus in P3-M2, lack of lingual folds in p3, etc). Individual variations in S. tchadensis n. sp. appr…

geographySubfamilygeography.geographical_feature_categoryHypolagusbiologyPaleontologyCentral africaLate Miocenebiology.organism_classificationQE701-760late miocene chad africa mammalia leporidae serengetilagus phylogeny mode of life.PaleontologyErg (landform)PhylogeneticsGenus[SDU.STU.PG] Sciences of the Universe [physics]/Earth Sciences/Paleontology[SDU.STU.PG]Sciences of the Universe [physics]/Earth Sciences/PaleontologyComputingMilieux_MISCELLANEOUS
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Microbial succession of nitrate-reducing bacteria in the rhizosphere of Poa alpina across a glacier foreland in the Central Alps

2006

International audience; Changes in community structure and activity of the dissimilatory nitrate-reducing community were investigated across a glacier foreland in the Central Alps to gain insight into the successional pattern of this functional group and the driving environmental factors. Bulk soil and rhizosphere soil of Poa alpina was sampled in five replicates in August during the flowering stage and in September after the first snowfalls along a gradient from 25 to 129 years after deglaciation and at a reference site outside the glacier foreland (> 2000 years deglaciated). In a laboratory-based assay, nitrate reductase activity was determined colorimetrically after 24 h of anaerobic inc…

glacierTime FactorsMolecular Sequence DataBulk soilEcological successionNitrate reductaseNitrate ReductasePlant RootsMicrobiologydiversitysoil03 medical and health scienceschemistry.chemical_compoundNitrateGermanyBotanyIce Coverpâturin des alpesGlacier forelandPoaEcosystemPhylogenySoil MicrobiologyEcology Evolution Behavior and SystematicsPoa alpina030304 developmental biology0303 health sciencesRhizosphereBacteriabiology030306 microbiologyDiscriminant AnalysisGenetic Variation15. Life on landbiology.organism_classificationmolecular anlysispoa alpina[SDV.MP]Life Sciences [q-bio]/Microbiology and Parasitologychemistrycommunity structureMonte Carlo MethodSoil microbiologyPolymorphism Restriction Fragment LengthEnvironmental Microbiology
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The universal ancestor : an unfinished reconstruction

2015

El cenancestro se define como el ultimo ancestro comun de todos los seres vivos que existen actualmente. Su naturaleza se ha inferido a partir de la identificacion de los genes homologos entre los linajes de arqueas, bacterias y eucariontes. Estas inferencias indican que el cenancestro poseia un sistema de traduccion de proteinas relativamente moderno y era similar en complejidad a una celula actual. Sin embargo, las enzimas claves que se encargan tanto de la replicacion del material genetico como de la biosintesis de membranas celulares no son homologas entre los linajes celulares. Aqui revisamos brevemente la historia del concepto del ultimo ancestro comun y las distintas hipotesis que se…

horizontal transferenceMultidisciplinarycommon ancestorHistory and Philosophy of ScienceLUCAPhilosophyUniversal phylogenyearly evolutionComunicaciónHumanitiesAncestor
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Revision of Recent and fossil Mixtacandona Klie 1938 (Ostracoda, Candonidae) from Italy, with description of a new species

2017

Although studies on ostracods dwelling in inland subterranean habitats of Italy have increased in the last decades, highlighting a considerable taxonomic diversity, available information is still far from sufficient to understand phylogenetic and biogeographic relationships. Mixtacandona Klie 1938 is one of the most common and diverse genera of ostracods in subterranean waters. Of the 20 living recognized species in the genus, all stygobiontic and restricted to the Palearctic Region, four are known for the Italian peninsula and Sardinia, one of which exclusively as fossil. Several other Recent and fossil taxa attributable to Mixtacandona, but identified at supraspecific level, have been rep…

hypogean ostracods morphology taxonomy distribution Mixtacandona idrisi n. sp.0106 biological sciencesArthropodaOstracodaSettore BIO/05 - ZoologiaBiology010603 evolutionary biology01 natural sciencesCavePeninsulaGenusCrustaceaOstracodAnimalsAnimaliaSicilyEcosystemPhylogenyEcology Evolution Behavior and SystematicsTaxonomyCandonidaegeographygeography.geographical_feature_categoryPhylogenetic treeFossilsEcology010604 marine biology & hydrobiologyBiodiversitybiology.organism_classificationPodocopidaTaxonCandonidaeAnimal Science and ZoologyTaxonomy (biology)
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Iron Induces Proliferation and Morphogenesis in Primmorphs from the Marine SpongeSuberites domuncula

2002

Dissociated cells from marine demosponges retain their proliferation capacity if they are allowed to form special aggregates, the primmorphs. On the basis of incorporation studies and septin gene expression, we show that Fe3+ ions are required for the proliferation of cells in primmorphs from Suberites domuncula. In parallel, Fe3+ induced the expression of ferritin and strongly stimulated the synthesis of spicules. This result is supported by the finding that the enzymatic activity of silicatein, converting organosilicon to silicic acid, depends on Fe3+. Moreover, the expression of a scavenger receptor molecule, possibly involved in the morphology of spicules, depends on the presence of Fe3…

inorganic chemicalsIronMolecular Sequence DataMorphogenesisFluorescent Antibody TechniqueSeptinModels BiologicalPolymerase Chain ReactionFungal ProteinsSponge spiculeGene expressionGeneticsAnimalsHistidineAmino Acid SequenceReceptors ImmunologicScavenger receptorMolecular BiologyPhylogenyReceptors LipoproteinReceptors ScavengerSequence Homology Amino AcidbiologyEcologySilicatesMembrane ProteinsDNACell BiologyGeneral MedicineScavenger Receptors Class BBlotting Northernbiology.organism_classificationCathepsinsRecombinant ProteinsPoriferaCell biologySuberites domunculaFerritinSpongeFerritinsbiology.proteinCell DivisionDNA and Cell Biology
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Extremophilic microbial communities on photovoltaic panel surfaces: a two‐year study

2020

Solar panel surfaces can be colonized by microorganisms adapted to desiccation, temperature fluctuations and solar radiation. Although the taxonomic and functional composition of these communities has been studied, the microbial colonization process remains unclear. In the present work, we have monitored this microbial colonization process during 24 months by performing weekly measurements of the photovoltaic efficiency, carrying out 16S rRNA gene high‐throughput sequencing, and studying the effect of antimicrobial compounds on the composition of the microbial biocenosis. This is the first time a long‐term study of the colonization process of solar panels has been performed, and our results…

lcsh:BiotechnologyBioengineeringBiologyGeneralist and specialist speciesApplied Microbiology and BiotechnologyBiochemistry03 medical and health sciencesExtremophileslcsh:TP248.13-248.65RNA Ribosomal 16SExtreme environmentExtremophileColonizationPhylogenyResearch Articles030304 developmental biology0303 health sciencesBacteria030306 microbiologyEcologyMicrobiotaPhotovoltaic systemfood and beveragesBiodiversity15. Life on landMicrobial population biology13. Climate actionSpecies richnessDesiccationBiotechnologyResearch ArticleMicrobial Biotechnology
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Blueprint for a minimal photoautotrophic cell: conserved and variable genes in Synechococcus elongatus PCC 7942.

2011

This is an Open Access article distributed under the terms of the Creative Commons Attribution License.-- et al.

lcsh:QH426-470Gene Transfer HorizontalGenomic IslandsOperonlcsh:BiotechnologyComputingMilieux_LEGALASPECTSOFCOMPUTINGmacromolecular substancesGenome03 medical and health sciencesOpen Reading FramesBacterial ProteinsBacterial proteinslcsh:TP248.13-248.65Genomic islandGeneticsGenomic islandsGeneGenome sizeGene transferPhylogeny030304 developmental biologyGeneticsSynechococcus0303 health sciencesBase CompositionGenomebiology030302 biochemistry & molecular biologySynechococcusbiology.organism_classification3. Good healthlcsh:GeneticsCodon usage biasHorizontal gene transferbacteriaGenome BacterialBiotechnologyResearch ArticleBMC genomics
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Virulence factor rtx in Legionella pneumophila, evidence suggesting it is a modular multifunctional protein

2008

Abstract Background The repeats in toxin (Rtx) are an important pathogenicity factor involved in host cells invasion of Legionella pneumophila and other pathogenic bacteria. Its role in escaping the host immune system and cytotoxic activity is well known. Its repeated motives and modularity make Rtx a multifunctional factor in pathogenicity. Results The comparative analysis of rtx gene among 6 strains of L. pneumophila showed modularity in their structures. Among compared genomes, the N-terminal region of the protein presents highly dissimilar repeats with functionally similar domains. On the contrary, the C-terminal region is maintained with a fashionable modular configuration, which gives…

lcsh:QH426-470Virulence Factorslcsh:BiotechnologyBacterial ToxinsVirulencemedicine.disease_causeLegionella pneumophilaVirulence factorLegionella pneumophilaMicrobiologyImmune systemBacterial Proteinslcsh:TP248.13-248.65GeneticsmedicineAnimalsHumansCytotoxic T cellPhylogenyVirulencebiologyToxinHost (biology)Pathogenic bacteriabiology.organism_classificationVirologyProtein Structure Tertiarylcsh:GeneticsGenes BacterialResearch ArticleBiotechnologyBMC Genomics
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Solving a Bloody Mess: B-Vitamin Independent Metabolic Convergence among Gammaproteobacterial Obligate Endosymbionts from Blood-Feeding Arthropods an…

2015

Endosymbiosis is a common phenomenon in nature, especially between bacteria and insects, whose typically unbalanced diets are usually complemented by their obligate endosymbionts. While much interest and focus has been directed toward phloem-feeders like aphids and mealybugs, blood-feeders such as the Lone star tick (Amblyomma americanum), Glossina flies, and the human body louse (Pediculus humanus corporis) depend on obligate endosymbionts which complement their B-vitamin-deficient diets, and thus are required for growth and survival. Glossiphoniid leeches have also been found to harbor distinct endosymbionts housed in specialized organs. Here, we present the genome of the bacterial endosy…

leech endosymbiontDNA BacterialMolecular Sequence DataZoologyblood-feederProvidenciaBiologyProvidencia siddalliiAmblyomma americanum03 medical and health sciencesSymbiosisLeechesRNA Ribosomal 16SBotanyGammaproteobacteriaGeneticsAnimalsHumansgenome reductionSymbiosisEcology Evolution Behavior and SystematicsPhylogeny030304 developmental biology2. Zero hunger0303 health sciencesEndosymbiosisObligate030306 microbiologyHost (biology)DipterafungiVitaminsbiochemical phenomena metabolism and nutritionbiology.organism_classificationB vitaminsCandidatusB-vitaminbacteriaHaementeria officinalisGammaproteobacteriaGenome BacterialResearch ArticleGenome Biology and Evolution
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Biology of the sauropod dinosaurs: the evolution of gigantism

2010

The herbivorous sauropod dinosaurs of the Jurassic and Cretaceous periods were the largest terrestrial animals ever, surpassing the largest herbivorous mammals by an order of magnitude in body mass. Several evolutionary lineages among Sauropoda produced giants with body masses in excess of 50 metric tonnes by conservative estimates. With body mass increase driven by the selective advantages of large body size, animal lineages will increase in body size until they reach the limit determined by the interplay of bauplan, biology, and resource availability. There is no evidence, however, that resource availability and global physicochemical parameters were different enough in the Mesozoic to ha…

long neck10253 Department of Small AnimalsPopulationZoology1100 General Agricultural and Biological SciencesBone and BonesGeneral Biochemistry Genetics and Molecular BiologyDinosaursSauropoda1300 General Biochemistry Genetics and Molecular BiologyAnimalsBody SizegigantismeducationDinosauriaMasticationPhylogenySauropodaphylogenetic heritageHerbivoreeducation.field_of_studyBone Development630 AgriculturebiologyFossilsEcologySauropodomorphaOriginal ArticlesSaurischiabiology.organism_classificationBiological EvolutionEctothermBasal metabolic rate570 Life sciences; biologyevolutionary innovationGeneral Agricultural and Biological SciencesMesozoic
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