Search results for "plication"
showing 10 items of 8564 documents
Reconstruction and analysis of genome-scale metabolic model of a photosynthetic bacterium
2010
Abstract Background Synechocystis sp. PCC6803 is a cyanobacterium considered as a candidate photo-biological production platform - an attractive cell factory capable of using CO2 and light as carbon and energy source, respectively. In order to enable efficient use of metabolic potential of Synechocystis sp. PCC6803, it is of importance to develop tools for uncovering stoichiometric and regulatory principles in the Synechocystis metabolic network. Results We report the most comprehensive metabolic model of Synechocystis sp. PCC6803 available, iSyn669, which includes 882 reactions, associated with 669 genes, and 790 metabolites. The model includes a detailed biomass equation which encompasses…
Genome Sequencing and Transcriptome Analysis Reveal Recent Species-Specific Gene Duplications in the Plastic Gilthead Sea Bream (Sparus aurata)
2019
Gilthead sea bream is an economically important fish species that is remarkably well-adapted to farming and changing environments. Understanding the genomic basis of this plasticity will serve to orientate domestication and selective breeding toward more robust and efficient fish. To address this goal, a draft genome assembly was reconstructed combining short- and long-read high-throughput sequencing with genetic linkage maps. The assembled unmasked genome spans 1.24 Gb of an expected 1.59 Gb genome size with 932 scaffolds (~732 Mb) anchored to 24 chromosomes that are available as a karyotype browser at www.nutrigroup-iats.org/seabreamdb. Homology-based functional annotation, supported by R…
Territoriality versus flocking in the Zenaida dove (Zenaida aurita): resource polymorphism revisited using morphological and genetic analyses.
2011
11 pages; International audience; The term “resource polymorphism” refers to the existence of alternative phenotypes in relation to resource use, as a result of disruptive selection. Evidence for resource polymorphism is widespread in fish but remains scarce in birds. Although Zenaida Doves (Zenaida aurita) usually defend year-round territories, doves on Barbados can also be observed foraging at seed-storage sites in large flocks with little, if any, inter-individual aggression. On the basis of morphological variation, it has been suggested (Sol et al. 2005) that this represents a case of resource polymorphism, primarily driven by competition for territories. Using new data, we revisited th…
Sexing birds using discriminant function analysis: a critical appraisal.
2011
9 pages; International audience; Discriminant function analysis (DFA) based on morphological measurements is a quick, inexpensive, and efficient method for sex determination in field studies on cryptically monomorphic bird species. However, behind the apparent standardization and relative simplicity of DFA lie subtle differences and pitfalls that have been neglected in some studies. Most of these concerns directly affect assessment of the discriminant performance, a parameter of crucial importance in practice because it provides a measure of the quality of an equation that may be used in later field studies. Using results from 141 published studies and simulations based on a large data set …
Statistical modelling and RCS detrending methods provide similar estimates of long-term trend in radial growth of common beech in north-eastern France
2011
International audience; Dendrochronological methods have greatly contributed to the documentation of past long-term trends in forest growth. These methods primarily focus on the high-frequency signals of tree ring chronologies. They require the removal of the ageing trend in tree growth, known as 'standardisation' or 'detrending', as a prerequisite to the estimation of such trends. Because the approach is sequential, it may however absorb part of the low-frequency historical signal. In this study, we investigate the effect of a sequential and a simultaneous estimation of the ageing trend on the chronology of growth. We formerly developed a method to estimate historical changes in growth, in…
Reviewing research priorities in weed ecology, evolution and management: a horizon scan.
2018
Weedy plants pose a major threat to food security, biodiversity, ecosystem services and consequently to human health and wellbeing. However, many currently used weed management approaches are increasingly unsustainable. To address this knowledge and practice gap, in June 2014, 35 weed and invasion ecologists, weed scientists, evolutionary biologists and social scientists convened a workshop to explore current and future perspectives and approaches in weed ecology and management. A horizon scanning exercise ranked a list of 124 pre-submitted questions to identify a priority list of 30 questions. These questions are discussed under seven themed headings that represent areas for renewed and em…
Modelling vertical and lateral weed seed movements during mouldboard ploughing with a skim-coulter
2001
Abstract The vertical distribution of weed seeds in soil is crucial because seedling emergence varies with seed depth, whereas lateral soil displacement during mouldboard ploughing contributes to weed dispersal within the tilled field. In order to model vertical and lateral seed displacements during ploughing, an existing model describing soil particle movements for different ploughing characteristics (depth and width) and soil structures was adapted to integrate the effect of a skim-coulter. This model was tested in two field trials, in Northern France, using coloured plastic beads to imitate weed seeds. The trial in Dijon was set up on an eutric cambisol and comprised both compacted and u…
A haplotype-resolved, de novo genome assembly for the wood tiger moth (Arctia plantaginis) through trio binning
2020
ABSTRACT Background Diploid genome assembly is typically impeded by heterozygosity because it introduces errors when haplotypes are collapsed into a consensus sequence. Trio binning offers an innovative solution that exploits heterozygosity for assembly. Short, parental reads are used to assign parental origin to long reads from their F1 offspring before assembly, enabling complete haplotype resolution. Trio binning could therefore provide an effective strategy for assembling highly heterozygous genomes, which are traditionally problematic, such as insect genomes. This includes the wood tiger moth (Arctia plantaginis), which is an evolutionary study system for warning colour polymorphism. F…
Assessment of genetically modified maize GA21 for renewal of authorisation under Regulation (EC) No 1829/2003 (application EFSA‐GMO‐RX‐005)
2017
Efsa Panel On Genetically Modified Organisms (gmo) Requestor: European Commission (DG SANTE)Question number: EFSA-Q-2016-00714Correspondence; Following the submission of application EFSA-GMO-RX-005 under Regulation (EC) No 1829/2003 from Syngenta Crop Protection NV/SA, the Panel on Genetically Modified Organisms of the European Food Safety Authority (GMO Panel) was asked to deliver a scientific risk assessment on the data submitted in the context of the renewal of authorisation application of the herbicide-tolerant genetically modified maize GA21. The data received in the context of this renewal application contained post-market environmental monitoring reports, a systematic search and eval…
On Some Misconceptions Concerning Digital Banking and Alternative Delivery Channels
2016
A great deal of conceptual confusion surrounds the notions of digital banking and innovative alternative delivery channels that support banking and other financial transactions globally. The authors contend that the concepts of digital banking and associated delivery channels are ambiguous and restrictive; their usability has been undermined and their purpose and objective have, to a large extent, been misunderstood. Against this backdrop, the authors offer an inclusive definition of digital banking and delivery channels and provide logical explanations of these terms that can benefit scholars, the telecommunication sector, the banking industry, policy makers, and service providers (in term…