Search results for "polychaete"

showing 10 items of 27 documents

De novo transcriptome assembly and developmental mode specific gene expression of Pygospio elegans

2017

Species with multiple different larval developmental modes are interesting models for the study of mechanisms underlying developmental mode transitions and life history evolution. Pygospio elegans, a small, tube-dwelling polychaete worm commonly found in estuarine and marine habitats around the northern hemisphere, is one species with variable developmental modes. To provide new genomic resources for studying P. elegans and to address the differences in gene expression between individuals producing offspring with different larval developmental modes, we performed whole transcriptome Illumina RNA sequencing of adult worms from two populations and prepared a de novo assembly of the P. elegans…

0106 biological sciences0301 basic medicineDe novo transcriptome assemblySequence assemblyBiology010603 evolutionary biology01 natural sciencesTranscriptome03 medical and health sciencesGene expressionAnimalsgeeniekspressioGenes Developmental14. Life underwaterEcology Evolution Behavior and SystematicsGeneticsLarvaPolychaeteGene Expression ProfilingfungiGene Expression Regulation DevelopmentalRNAMolecular Sequence AnnotationPolychaetaMarine invertebratesbiology.organism_classification030104 developmental biologyLarvagene expressionta1181TranscriptomeMicrosatellite RepeatsDevelopmental BiologyEvolution & Development
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Seasonal genetic variation associated with population dynamics of a poecilogonous polychaete worm

2017

Poecilogonous species show variation in developmental mode, with larvae that differ both morphologically and ecologically. The spionid polychaete Pygospio elegans shows variation in developmental mode not only between populations, but also seasonally within populations. We investigated the consequences of this developmental polymorphism on the spatial and seasonal genetic structure of P. elegans at four sites in the Danish Isefjord‐Roskilde‐Fjord estuary at six time points, from March 2014 until February 2015. We found genetic differentiation between our sampling sites as well as seasonal differentiation at two of the sites. The seasonal genetic shift correlated with the appearance of new s…

0106 biological sciences0301 basic medicinechaotic genetic patchinessPopulationZoologyBiology010603 evolutionary biology01 natural sciencesPygospio eleganspoecilogonydevelopmental mode03 medical and health sciencesGenetic variationbet-hedgingeducationEcology Evolution Behavior and SystematicsOriginal ResearchNature and Landscape ConservationLarvageographyeducation.field_of_studyPolychaetegeography.geographical_feature_categoryPygospio elegansEcologyReproductive successEcologyEstuarybiology.organism_classificationgeneettinen muuntelu030104 developmental biologyGenetic structureta1181bet‐hedgingEcology and Evolution
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Application of a new protocol to evaluate the benthic impacts of aquaculture: Colonization of experimental units for monitoring by polychaeta

2019

A range of different protocols and indices have been developed in recent years for the definition of Environmental Quality Standards in aquaculture. However, it can be difficult to compare these protocols or indices between different regions or different habitats due to spatial heterogeneity at different scales. We carried out a field study to estimate the effectiveness of experimental units (sediment-filled trays) as an environmental management tool. The experimental units were filled with two different sediments - sand and mud - and placed underneath two fish farm facilities for one month. Using polychaetes to assess the ecological status, AMBI and multidimensional analysis showed clear r…

0106 biological sciencesFish farmingGeneral Decision SciencesCapitella capitataAquacultureExperimental trays010501 environmental sciences010603 evolutionary biology01 natural sciencesAquacultureZoologíaEcology Evolution Behavior and Systematics0105 earth and related environmental sciencesPolychaeteEcologybiologybusiness.industrybiology.organism_classificationSpatial heterogeneityFisheryAmphareteCapitellaBenthic zoneDefaunated sedimentEnvironmental sciencebusinessPolychaetesRecolonizationEcological Indicators
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Structuring factors of the spatio-temporal variability of macrozoobenthos assemblages in a southern Mediterranean lagoon: How useful for bioindicatio…

2017

International audience; The authors investigated the impact of the extension of the El Kantra Channel on the composition and structure of macrobenthic assemblages in Boughrara Lagoon (Gulf of Gabes, Tunisia along with the use of 4 biotic indices (AMBI, BENTIX, M-AMBI and TUBI). Thirteen stations were sampled seasonally in 2012–2013. Forty-one species were found in 2012–2013 not recorded in 2009–2010, including 20 species of polychaetes belonging to the trophic groups of deposit-feeders and carnivores which are expected to increase in areas disturbed by organic pollution. During the survey, we recorded a high fish mortality, essentially caused by the development of harmful algal blooms (HAB)…

0106 biological sciencesMediterranean climateBiotic indicesFood ChainTunisiaBiodiversityBenthic macrofaunaSpatio-temporal variability010501 environmental sciencesAquatic ScienceOceanography01 natural sciencesAlgal bloom[ SDE ] Environmental SciencesMediterranean seaSpatio-Temporal AnalysisMediterranean SeaAnimalsEcosystemSeawater14. Life underwaterEcosystem0105 earth and related environmental sciencesTrophic levelPolychaetebiologyEcology010604 marine biology & hydrobiologyEcological statusFishesBiodiversityEutrophicationbiology.organism_classificationPollutionTrophic structureInvertebrates6. Clean waterOceanography13. Climate action[SDE]Environmental SciencesDinoflagellidaEnvironmental scienceSeasonsBoughrara lagoonEutrophicationEnvironmental MonitoringMarine pollution bulletin
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Small-scale patches of detritus as habitat for invertebrates within a Zostera noltei meadow

2021

Abstract Seagrass detritus can attract numerous invertebrates as it provides food and substrate within the meadow or in adjacent environments. Nonetheless, several factors could modify the invertebrate response to this habitat. In this study, we tested if epifaunal colonisation of Zostera noltei detritus was related to substrate availability rather than food and whether colonising assemblages were similar according to the meadow structural complexity. Litterbags filled with natural or artificial detritus were deployed within an eelgrass meadow in a Mediterranean coastal lagoon (Thau lagoon, France). Colonisation appeared to be driven by the presence of detritus, with similar assemblages in …

0106 biological sciencesSettore BIO/05 - ZoologiaOceanography[SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics Phylogenetics and taxonomy01 natural sciencesPeracaridPeracaridsComputingMilieux_MISCELLANEOUSTrophic levelbiologyEcology[SDE.IE]Environmental Sciences/Environmental EngineeringZosteraceaeWrackGeneral MedicineMesograzerBiodiversityPlant litterPollutionSubstrate (marine biology)CrustaceansSeagrassHabitatBeach-cast[SDE]Environmental SciencesMacrofaunaFrancePolychaetesSettore BIO/07 - Ecologia[SDE.MCG]Environmental Sciences/Global ChangesCrustaceanAquatic Science010603 evolutionary biologyTransitional systemMesograzersAnimalsHumans14. Life underwaterEcosystemZostera nolteiDetritus010604 marine biology & hydrobiologyLeaf litter15. Life on landbiology.organism_classificationPolychaeteInvertebrates[SDE.ES]Environmental Sciences/Environmental and SocietyColonisation[SDE.BE]Environmental Sciences/Biodiversity and EcologyHabitat structure
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Reducing the data-deficiency of threatened European habitats: Spatial variation of sabellariid worm reefs and associated fauna in the Sicily Channel,…

2017

Biogenic reefs, such as those produced by tube-dwelling polychaetes of the genus Sabellaria, are valuable marine habitats which are a focus of protection according to European legislation. The achievement of this goal is potentially hindered by the lack of essential empirical data, especially in the Mediterranean Sea. This study addresses some of the current knowledge gaps by quantifying and comparing multi-scale patterns of abundance and distribution of two habitat-forming species (Sabellaria alveolata and S. spinulosa) and their associated fauna along 190 km of coast on the Italian side of the Sicily Channel. While the abundance of the two sabellariids and the total number of associated t…

0106 biological sciencesSettore BIO/07 - EcologiaEndangered habitatFaunaPopulation DynamicsSettore BIO/05 - ZoologiaAquatic ScienceOceanography010603 evolutionary biology01 natural sciencesBiogenic reef; Ecosystem engineer; Endangered habitat; Sabellaria alveolata; Sabellaria spinulosa; Spatial scale; Species interaction; SubtidalSabellariaSabellaria alveolataMediterranean seaAbundance (ecology)Biogenic reef; Ecosystem engineer; Endangered habitat; Sabellaria alveolata Sabellaria spinulosa Spatial scale Species interaction SubtidalMediterranean SeaAnimalsAmphipodaSubtidal14. Life underwaterSicilyEcosystemSabellaria spinulosaPolychaetebiologyEcology010604 marine biology & hydrobiologyData CollectionSpatial scalePolychaetaGeneral MedicineBiodiversity15. Life on landbiology.organism_classificationPollutionEcosystem engineerSabellaria spinulosaBiogenic reefSpecies richnessSpecies interactionSabellaria alveolataEnvironmental Monitoring
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Acute and chronic response to a change in salinity of the euryhaline polychaete Pygospio elegans (Claparède)

2019

Abstract Estuaries are thought to be very harsh environments because their physico-chemical parameters, such as salinity, temperature and oxygen, can fluctuate substantially. The distribution of species living in an estuary is largely determined by how well they can cope with such fluctuations. The spionid polychaete Pygospio elegans is common in boreal estuarine habitats that show strong salinity fluctuations, living in habitats ranging from fully marine salinities to brackish environments with salinities as low as 5. In this study we investigated the abilities of P. elegans to cope with an acute as well as a long-term change in salinity. Specimens originating from a salinity of about 15 w…

0106 biological scienceseducation.field_of_studygeographyPolychaetegeography.geographical_feature_categoryBrackish waterRange (biology)010604 marine biology & hydrobiologyPopulationZoologyEstuaryEuryhalineAquatic ScienceBiologybiology.organism_classification010603 evolutionary biology01 natural sciencesSalinityOsmoregulationeducationEcology Evolution Behavior and SystematicsJournal of Experimental Marine Biology and Ecology
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Population and reproductive dynamics of the polychaete Pygospio elegans in a boreal estuary complex

2016

Pygospio elegans is an opportunistic, wide-spread spionid polychaete that reproduces asexually via fragmentation and can produce benthic and pelagic larvae, hence combining different developmental modes in one species. We documented the density, size distribution, and reproductive activity of P. elegans at four sites in the Danish Isefjord-Roskilde Fjord estuary complex, where all modes of reproduction were reported. We compared population dynamics of this species to environmental parameters such as salinity, temperature, and sediment characteristics (grain size, sorting, porosity, water content, organic content, C/N). We observed that new cohorts—resulting either from sexual or asexual rep…

0106 biological scienceslife historyPopulationAsexual reproduction010603 evolutionary biology01 natural sciencesenvironmental impactpoecilogonyeducationdevelopmentta119Fragmentation (reproduction)Polychaeteeducation.field_of_studygeographygeography.geographical_feature_categorybiologyEcology010604 marine biology & hydrobiologyEstuaryPelagic zonebiology.organism_classificationspatiotemporal variationSexual reproductionBenthic zoneta1181Animal Science and ZoologyInvertebrate Biology
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DNA Methylation and Potential for Epigenetic Regulation in Pygospio elegans.

2015

Transitions in developmental mode are common evolutionarily, but how and why they occur is not understood. Developmental mode describes larval phenotypes, including morphology, ecology and behavior of larvae, which typically are generalized across different species. The polychaete worm Pygospio elegans is one of few species polymorphic in developmental mode, with multiple larval phenotypes, providing a possibility to examine the potential mechanisms allowing transitions in developmental mode. We investigated the presence of DNA methylation in P. elegans, and, since maternal provisioning is a key factor determining eventual larval phenotype, we compared patterns of DNA methylation in females…

0301 basic medicineBiochemistryEpigenesis GeneticTranscriptomeLarvaeInvertebrate GenomicsGeneticsMultidisciplinaryDNA methylationNucleotidesOrganic CompoundsQRphenotypesMethylationGenomicsPhenotypeChromatinDNA-metylaatioNucleic acidsChemistryCpG siteepigenetiikkaDNA methylationPhysical SciencesMedicineFemaleEpigeneticsDNA modificationTranscriptome AnalysisChromatin modificationResearch ArticleChromosome biologyCell biologyScienceBiology03 medical and health sciencestoukatCytosineGeneticsAnimalsEpigeneticsGeneBiology and life sciencesMetamorphosista1184fungiOrganic ChemistryOrganismsChemical CompoundsComputational BiologyPolychaetaDNAGenome AnalysisInvertebrates030104 developmental biologyDifferentially methylated regionsPyrimidinesAnimal Genomicspolychaetesta1181CpG IslandsGene expressionDevelopmental BiologyPloS one
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Polymorphism in Developmental Mode and Its Effect on Population Genetic Structure of a Spionid Polychaete, Pygospio elegans

2012

Population genetic structure of sedentary marine species is expected to be shaped mainly by the dispersal ability of their larvae. Long-lived planktonic larvae can connect populations through migration and gene flow, whereas species with nondispersive benthic or direct-developing larvae are expected to have genetically differentiated populations. Poecilogonous species producing different larval types are ideal when studying the effect of developmental mode on population genetic structure and connectivity. In the spionid polychaete Pygospio elegans, different larval types have been observed between, and sometimes also within, populations. We used microsatellite markers to study population st…

Gene FlowSalinityGenotypePopulationPlant ScienceEnvironmentBiologyENVIRONMENTAL-FACTORSGene flowBALTIC SEA AREAPELAGIC LARVAL DURATIONSpecies SpecificityATLANTIC SALMONReproduction AsexualAnimalseducationMARINE-INVERTEBRATESGenetic diversityPolychaeteeducation.field_of_studyGeographyEcologyfungiGenetic VariationPolychaetaCOD GADUS-MORHUAPOSTGLACIAL COLONIZATIONMarine invertebratesbiology.organism_classificationGenetics PopulationGASTROPOD GENUS ALDERIABenthic zoneLarvaGenetic structureta1181Biological dispersalAnimal MigrationAnimal Science and ZoologyLANDSCAPE GENETICSSALMON SALMO-SALARMicrosatellite RepeatsIntegrative and Comparative Biology
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