Search results for "population genetics."

showing 10 items of 248 documents

Lymnaea schirazensis, an Overlooked Snail Distorting Fascioliasis Data: Genotype, Phenotype, Ecology, Worldwide Spread, Susceptibility, Applicability

2011

BackgroundLymnaeid snails transmit medical and veterinary important trematodiases, mainly fascioliasis. Vector specificity of fasciolid parasites defines disease distribution and characteristics. Different lymnaeid species appear linked to different transmission and epidemiological patterns. Pronounced susceptibility differences to absolute resistance have been described among lymnaeid populations. When assessing disease characteristics in different endemic areas, unexpected results were obtained in studies on lymnaeid susceptibility to Fasciola. We undertook studies to understand this disease transmission heterogeneity.Methodology/principal findingsA ten-year study in Iran, Egypt, Spain, t…

EpidemiologyInternational CooperationSnailAnimal PhylogeneticsGlobal HealthPolymerase Chain ReactionMalacologyFoodborne DiseasesGlobal Change EcologyComparative AnatomyPhylogenyLymnaeaGalba truncatulaMolecular EpidemiologyMultidisciplinaryEcologyGeographybiologyZoonotic DiseasesEcologyQRMalacologyInfectious DiseasesPhenotypeBiogeographyVeterinary DiseasesMedicinePublic HealthResearch ArticleNeglected Tropical DiseasesDisease EcologyFascioliasisConservation of Natural ResourcesSpecies complexFasciolosisGenotypeScienceZoologyDNA MitochondrialDNA RibosomalInfectious Disease EpidemiologyIntraspecific competitionVeterinary EpidemiologyHepaticaPhylogeneticsbiology.animalparasitic diseasesGeneticsParasitic DiseasesAnimalsBiologyEvolutionary BiologyModels GeneticSelfingSequence Analysis DNAbiology.organism_classificationBiomarker EpidemiologyHaplotypesAnimal TaxonomyBioindicatorsParasitologyVeterinary ScienceZoologyPopulation GeneticsBiomarkersHelminthologyPLoS ONE
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Phylogeography of a Habitat Specialist with High Dispersal Capability: The Savi’s Warbler Locustella luscinioides

2012

In order to describe the influence of Pleistocene glaciations on the genetic structure and demography of a highly mobile, but specialized, passerine, the Savi's Warbler (Locustella luscinioides), mitochondrial DNA sequences (ND2) and microsatellites were analysed in c.330 individuals of 17 breeding and two wintering populations. Phylogenetic, population genetics and coalescent methods were used to describe the genetic structure, determine the timing of the major splits and model the demography of populations. Savi's Warblers split from its sister species c.8 million years ago and have two major haplotype groups that diverged in the early/middle Pleistocene. One of these clades originated in…

Evolutionary Genetics0106 biological sciencesAnimal EvolutionPopulation Dynamicslcsh:MedicinePopulation genetics01 natural sciencesCoalescent theoryWarblerSongbirdslcsh:ScienceGenome EvolutionPhylogenyLikelihood FunctionsPrincipal Component Analysis0303 health scienceseducation.field_of_studyMultidisciplinarybiologyGenomicsEuropePhylogeographyGenetic structureResearch ArticleGene FlowMolecular Sequence DataPopulationDNA Mitochondrial010603 evolutionary biology03 medical and health sciencesAnimalsEvolutionary SystematicseducationBiologyEcosystemDemography030304 developmental biologyAnalysis of VarianceEvolutionary BiologyBase SequenceModels Geneticlcsh:RComputational BiologyLocustella luscinioidesBayes TheoremSequence Analysis DNAbiology.organism_classificationOrganismal EvolutionPhylogeographyGenetics PopulationHaplotypesEvolutionary biologyBiological dispersallcsh:QAnimal MigrationGenome Expression AnalysisPopulation GeneticsMicrosatellite RepeatsPLoS ONE
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Genetic Characterization of Legionella pneumophila Isolated from a Common Watershed in Comunidad Valenciana, Spain

2013

Legionella pneumophila infects humans to produce legionellosis and Pontiac fever only from environmental sources. In order to establish control measures and study the sources of outbreaks it is essential to know extent and distribution of strain variants of this bacterium in the environment. Sporadic and outbreak-related cases of legionellosis have been historically frequent in the Comunidad Valenciana region (CV, Spain), with a high prevalence in its Southeastern-most part (BV). Environmental investigations for the detection of Legionella pneumophila are performed in this area routinely. We present a population genetics study of 87 L. pneumophila strains isolated in 13 different localities…

Evolutionary GeneticsBacterial DiseasesPopulation geneticslcsh:MedicineLocus (genetics)Legionella pneumophilaMicrobiologyMicrobial EcologyLegionella pneumophilaIntergenic regionGenetic variationmedicineNatural SelectionGeneticsGram Negativelcsh:ScienceBiologyMicrobial PathogensGeneticsRecombination GeneticGenetic diversityEvolutionary BiologyMultidisciplinaryLegionellosisbiologyEcologyEcologyPontiac feverlcsh:ROutbreakGenetic Variationbiology.organism_classificationmedicine.diseaseBacterial PathogensInfectious DiseasesSpainMicrobial EvolutionGenetic PolymorphismMedicinelcsh:QWater MicrobiologySequence AnalysisPopulation GeneticsResearch ArticlePLoS ONE
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The evolutionary history of the rediscovered Austrian population of the giant centipede Scolopendra cingulata Latreille 1829 (Chilopoda, Scolopendrom…

2014

The thermophilous giant centipede Scolopendra cingulata is a voracious terrestrial predator, which uses its modified first leg pair and potent venom to capture prey. The highly variable species is the most common of the genus in Europe, occurring from Portugal in the west to Iran in the east. The northernmost occurrences are in Hungary and Romania, where it abides in small isolated fringe populations. We report the rediscovery of an isolated Austrian population of Scolopendra cingulata with the first explicit specimen records for more than 80 years and provide insights into the evolutionary history of the northernmost populations utilizing fragments of two mitochondrial genes, COI and 16S, …

Evolutionary GeneticsEvolutionary ProcessesRange (biology)Animal EvolutionPopulationMolecular Sequence DataPopulation geneticsZoologylcsh:MedicineBiologyCingulataGenusAnimalseducationlcsh:ScienceScolopendra cingulataArthropodseducation.field_of_studyEvolutionary BiologyMultidisciplinaryPopulation BiologyFossilsScolopendralcsh:RBiology and Life SciencesAustria ; Hungary ; Europe ; Phylogenetic evolution ; Sequence alignment ; Evolutionary genetics ; Islands ; Population geneticsbiology.organism_classificationBiological EvolutionOrganismal EvolutionPhylogeographyBiogeographylcsh:QCentipedeZoologyPopulation GeneticsResearch ArticlePLoS ONE
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Genetic and Ecotypic Differentiation in a Californian Plant Polyploid Complex (Grindelia, Asteraceae)

2014

Studies of ecotypic differentiation in the California Floristic Province have contributed greatly to plant evolutionary biology since the pioneering work of Clausen, Keck, and Hiesey. The extent of gene flow and genetic differentiation across interfertile ecotypes that span major habitats in the California Floristic Province is understudied, however, and is important for understanding the prospects for local adaptation to evolve or persist in the face of potential gene flow across populations in different ecological settings. We used microsatellite data to examine local differentiation in one of these lineages, the Pacific Coast polyploid complex of the plant genus Grindelia (Asteraceae). W…

Evolutionary GeneticsMarshPlant EvolutionSpeciationlcsh:MedicinePlant ScienceCaliforniaGene flowPloidyMolecular SystematicsNatural Selectionlcsh:ScienceFlowering Plantseducation.field_of_studyMultidisciplinarygeography.geographical_feature_categoryGeographyEcotypeEcologyfood and beveragesPolyploid complexPlantsBiological EvolutionHabitatResearch ArticleGene FlowEvolutionary ProcessesGrindeliaGenotypeGeneral Science & TechnologyPopulationParallel EvolutionBiologyPolyploidyGrindeliaEvolutionary Adaptationparasitic diseasesGeneticsEvolutionary SystematicseducationHybridizationTaxonomyLocal adaptationEcotypeEvolutionary BiologygeographyPopulation Biologylcsh:ROrganismsBiology and Life SciencesGeobotanyPlant Taxonomybiology.organism_classificationOrganismal EvolutionGenetic Locilcsh:QPopulation GeneticsMicrosatellite RepeatsPLoS ONE
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From molecular genetics to phylodynamics: evolutionary relevance of mutation rates across viruses.

2012

Although evolution is a multifactorial process, theory posits that the speed of molecular evolution should be directly determined by the rate at which spontaneous mutations appear. To what extent these two biochemical and population-scale processes are related in nature, however, is largely unknown. Viruses are an ideal system for addressing this question because their evolution is fast enough to be observed in real time, and experimentally-determined mutation rates are abundant. This article provides statistically supported evidence that the mutation rate determines molecular evolution across all types of viruses. Properties of the viral genome such as its size and chemical composition are…

Evolutionary Geneticslcsh:Immunologic diseases. AllergyMutation rateGenome evolutionImmunologyGenome ViralBiologyGenomeMicrobiologyEvolution Molecular03 medical and health sciencesMutation RateMolecular evolutionPhylogeneticsVirologyGeneticsMolecular BiologyBiologylcsh:QH301-705.5Phylogeny030304 developmental biologyGenetics0303 health sciencesEvolutionary BiologyModels Genetic030306 microbiologyMutagenesisMicrobial MutationBiological EvolutionViral phylodynamicslcsh:Biology (General)Viral evolutionVirusesParasitologylcsh:RC581-607Population GeneticsResearch ArticlePLoS Pathogens
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Reconstruction of the evolutionary history of Saccharomyces cerevisiae x S. kudriavzevii hybrids based on multilocus sequence analysis.

2012

In recent years, interspecific hybridization and introgression are increasingly recognized as significant events in the evolution of Saccharomyces yeasts. These mechanisms have probably been involved in the origin of novel yeast genotypes and phenotypes, which in due course were to colonize and predominate in the new fermentative environments created by human manipulation. The particular conditions in which hybrids arose are still unknown, as well as the number of possible hybridization events that generated the whole set of natural hybrids described in the literature during recent years. In this study, we could infer at least six different hybridization events that originated a set of 26 S…

Evolutionary Geneticslcsh:MedicineYeast and Fungal ModelsWineSaccharomycesGenomeSouth AfricaNatural SelectionFungal EvolutionDNA FungalMycological Typing Techniqueslcsh:ScienceGenome EvolutionPhylogenyRecombination GeneticGeneticsMultidisciplinarybiologyfood and beveragesGenomicsBiological EvolutionEuropePhylogeographyPloidyResearch ArticleGenome evolutionEvolutionary ProcessesGenotypeGenes FungalIntrogressionGenomicsMycologySaccharomyces cerevisiaeMicrobiologySaccharomycesModel OrganismsPhylogeneticsGeneticsHumansAdaptationBiologyHybridizationHybridEvolutionary BiologyPloidiesChimeralcsh:RComparative GenomicsSouth Americabiology.organism_classificationYeastGenetic Polymorphismlcsh:QPopulation GeneticsMultilocus Sequence TypingPLoS ONE
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Forward and backward diffusion approximations for haploid exchangeable population models

2001

Abstract The class of haploid population models with non-overlapping generations and fixed population size N is considered such that the family sizes ν1,…,νN within a generation are exchangeable random variables. A criterion for weak convergence in the Skorohod sense is established for a properly time- and space-scaled process counting the number of descendants forward in time. The generator A of the limit process X is constructed using the joint moments of the offspring variables ν1,…,νN. In particular, the Wright–Fisher diffusion with generator Af(x)= 1 2 x(1−x)f″(x) appears in the limit as the population size N tends to infinity if and only if the condition lim N→∞ E((ν 1 −1) 3 )/(N Var …

Exchangeable random variablesStatistics and ProbabilityDualityPopulation geneticsCoalescent theoryDiffusion approximationModelling and SimulationQuantitative Biology::Populations and EvolutionNeutralityWright–Fisher diffusionHille–Yosida theoremWeak convergenceMathematicsWeak convergenceApplied MathematicsMathematical analysisHeavy traffic approximationCommutative diagramHille–Yosida theoremPopulation modelDiffusion processModeling and SimulationAncestorsDescendantsExchangeabilityCoalescentStochastic Processes and their Applications
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Evolution of Leaf Morphogenesis: Evidence from Developmental and Phylogenetic Data in Papaveraceae

1999

Variation of leaf morphology in Papaveraceae s.l. (including Fumariaceae and Pteridophyllum) has previously been shown to be related to developmental differences in the direction of segmentation and in blade‐petiole differentiation. Based on ontogenetic comparisons, we here distinguish polyternate, acropetal, basipetal‐pedate, basipetal‐pinnate, and divergent modes of dissection. In addition, undissected leaves occur in some taxa. Dissection modes can be grouped in two classes on the basis of blade‐petiole differentiation. Mapping of these morphogenetic traits on an independently obtained phylogenetic reconstruction reveals a high degree of homoplasy, indicating multiple evolutionary parall…

Fixation (population genetics)TaxonPhylogenetic treeOntogenyBotanyPapaveraceaeLeaf morphogenesisPlant ScienceBiologyPteridophyllumbiology.organism_classificationCladeEcology Evolution Behavior and SystematicsInternational Journal of Plant Sciences
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Linking seed dispersal and genetic structure of trees: a biogeographical approach

2009

Aim  Natural and human-induced differences in frugivore assemblages can influence the seed dispersal distances of trees. An important issue in seed dispersal systems is to understand whether differences in seed dispersal distances also affect the genetic structure of mature trees. One possible approach to test for a relationship between seed dispersal and the genetic structure of mature trees is to compare the genetic structure of two closely related tree species between two biogeographical regions that differ in frugivore assemblages and seed dispersal distances. Previous studies on two Commiphora species revealed that Commiphora guillauminii in Madagascar has a much lower seed dispersal d…

FrugivoreEcologyPollinationEcologySeed dispersalparasitic diseasesGenetic structureGenetic variationSpatial ecologyPopulation geneticsBiological dispersalBiologyEcology Evolution Behavior and SystematicsJournal of Biogeography
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