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showing 10 items of 14059 documents

IL-10-Modulated Human Dendritic Cells for Clinical Use: Identification of a Stable and Migratory Subset with Improved Tolerogenic Activity.

2015

Abstract Dendritic cells (DCs) are key regulators of protective immune responses and tolerance to (self-)Ags. Therefore, the scientific rationale for the use of tolerogenic DC therapy in the fields of allergies, autoimmunity, and transplantation medicine is strong. In this study, we analyzed the tolerogenic capacity of IL-10–modulated DC (IL-10DC) subpopulations to identify a DC subset that combines potent immunosuppressive activities with valuable immune properties for clinical implementation. IL-10DCs consist of two phenotypically distinct subpopulations: CD83highCCR7+ IL-10DCs and CD83lowCCR7− IL-10DCs. Suppressor assays with activated effector T cells revealed that CD4+ regulatory T cel…

0301 basic medicineChemokineReceptors CCR7medicine.medical_treatmentImmunologyImmunoglobulinsBiologymedicine.disease_causeLymphocyte ActivationT-Lymphocytes RegulatoryAutoimmunity03 medical and health sciencesImmune systemAntigens CDCell MovementmedicineImmune ToleranceImmunology and AllergyHumansIL-2 receptorCells CulturedInflammationMembrane GlycoproteinsChemokine CCL21Interleukin-2 Receptor alpha SubunitCell DifferentiationDendritic CellsInterleukin-10Interleukin 10Tolerance induction030104 developmental biologyCytokineImmunologybiology.proteinImmunotherapyCCL21Journal of immunology (Baltimore, Md. : 1950)
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Mass Spectrometry Imaging Differentiates Chromophobe Renal Cell Carcinoma and Renal Oncocytoma with High Accuracy

2020

Background: While subtyping of the majority of malignant chromophobe renal cell carcinoma (cRCC) and benign renal oncocytoma (rO) is possible on morphology alone, additional histochemical, immunohistochemical or molecular investigations are required in a subset of cases. As currently used histochemical and immunohistological stains as well as genetic aberrations show considerable overlap in both tumors, additional techniques are required for differential diagnostics. Mass spectrometry imaging (MSI) combining the detection of multiple peptides with information about their localization in tissue may be a suitable technology to overcome this diagnostic challenge. Patients and Methods: Formalin…

0301 basic medicineChromophobe Renal Cell Carcinoma610610 Medicine & healthmass spectrometry imagingBiologyCross-validationMass spectrometry imagingOncocytic renal tumors03 medical and health sciences0302 clinical medicineproteomics10049 Institute of Pathology and Molecular PathologymedicineRenal oncocytomachromophobe renal cell carcinomabusiness.industrymedicine.diseaseLinear discriminant analysisRandom forestSupport vector machine030104 developmental biologyOncology030220 oncology & carcinogenesis2730 OncologyDifferential diagnosisNuclear medicinebusinessrenal oncocytomaResearch PaperJournal of Cancer
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IL‐10‐producing B cells are characterized by a specific methylation signature

2019

Among the family of regulatory B cells, the subset able to produce interleukin-10 (IL-10) is the most studied, yet its biology is still a matter of investigation. The DNA methylation profiling of the il-10 gene locus revealed a novel epigenetic signature characterizing murine B cells ready to respond through IL-10 synthesis: a demethylated region located 4.5 kb from the transcription starting site (TSS), that we named early IL10 regulatory region (eIL10rr). This feature allows to distinguish B cells that are immediately prone and developmentally committed to IL-10 production from those that require a persistent stimulation to exert an IL-10-mediated regulatory function. These late IL-10 pro…

0301 basic medicineChronic lymphocytic leukemiaRegulatory B cellsImmunologyB-Lymphocyte SubsetsLymphoma Mantle-CellRegulatory Sequences Nucleic AcidBiologyLymphocyte ActivationB-cell malignanciesMice03 medical and health scienceschemistry.chemical_compoundInterleukin 100302 clinical medicineTranscription (biology)Immune ToleranceTumor MicroenvironmentmedicineAnimalsHumansImmunology and AllergyB cells; B-cell malignancies; DNA methylation; epigenetics; Interleukin 10; Immunology and Allergy; ImmunologyEpigeneticsB-Lymphocytes RegulatoryB cellsB cellDNA methylationepigeneticsGene Expression ProfilingB cells; B-cell malignancies; DNA methylation; epigenetics; Interleukin 10Cell DifferentiationMethylationmedicine.diseaseLeukemia Lymphocytic Chronic B-CellImmunity HumoralInterleukin-10Cell biologyMice Inbred C57BLInterleukin 10030104 developmental biologychemistryDNA methylationB-cell malignancieFemaleepigeneticDNA030215 immunologyEuropean Journal of Immunology
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2020

Objective: We investigated cerebral opioid receptor binding potential in patients with fibromyalgia syndrome (FMS) using positron-emission-tomography (PET) and correlated our results with patients' systemic interleukin-4 (IL-4) gene expression. Methods: In this pilot study, seven FMS patients (1 man, 6 women) agreed to participate in experimental PET scans. All patients underwent neurological examination, were investigated with questionnaires for pain, depression, and FMS symptoms. Additionally, blood for IL-4 gene expression analysis was withdrawn at two time points with a median latency of 1.3 years. Patients were investigated in a PET scanner using the opioid receptor ligand F-18-fluoro-…

0301 basic medicineCingulate cortexmedicine.medical_specialtymedicine.diagnostic_testbusiness.industrymedicine.drug_classGeneral NeuroscienceCentral nervous systemNeurological examination03 medical and health sciences030104 developmental biology0302 clinical medicineEndocrinologymedicine.anatomical_structureOpioidOpioid receptorOpioid Receptor BindingInternal medicinemedicineReceptorbusiness030217 neurology & neurosurgeryDepression (differential diagnoses)medicine.drugFrontiers in Neuroscience
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Effects of gaseous and solid constituents of air pollution on endothelial function

2018

Abstract Ambient air pollution is a leading cause of non-communicable disease globally. The largest proportion of deaths and morbidity due to air pollution is now known to be due to cardiovascular disorders. Several particulate and gaseous air pollutants can trigger acute events (e.g. myocardial infarction, stroke, heart failure). While the mechanisms by which air pollutants cause cardiovascular events is undergoing continual refinement, the preponderant evidence support rapid effects of a diversity of pollutants including all particulate pollutants (e.g. course, fine, ultrafine particles) and gaseous pollutants such as ozone, on vascular function. Indeed alterations in endothelial function…

0301 basic medicineClinical ReviewFine particulateAir pollutionAir pollution030204 cardiovascular system & hematologymedicine.disease_cause03 medical and health sciencesGreenhouse Gases0302 clinical medicineOzoneRisk FactorsEnvironmental healthMedicineAnimalsHumansEndothelial dysfunctionNitrogen dioxidePollutantInflammationAir PollutantsHuman studiesAmbient air pollutionbusiness.industryEnvironmental ExposureParticulates3. Good healthEditor's Choice030104 developmental biology13. Climate actionCardiovascular DiseasesOxidative stressEndothelium VascularCurrent (fluid)Cardiology and Cardiovascular MedicinebusinessVascular functionParticulate matterTranslational MedicineEuropean Heart Journal
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Deep learning architectures for prediction of nucleosome positioning from sequences data

2018

Abstract Background Nucleosomes are DNA-histone complex, each wrapping about 150 pairs of double-stranded DNA. Their function is fundamental for one of the primary functions of Chromatin i.e. packing the DNA into the nucleus of the Eukaryote cells. Several biological studies have shown that the nucleosome positioning influences the regulation of cell type-specific gene activities. Moreover, computational studies have shown evidence of sequence specificity concerning the DNA fragment wrapped into nucleosomes, clearly underlined by the organization of particular DNA substrings. As the main consequence, the identification of nucleosomes on a genomic scale has been successfully performed by com…

0301 basic medicineComputer scienceCellBiochemistrychemistry.chemical_compound0302 clinical medicineStructural Biologylcsh:QH301-705.5Nucleosome classificationSequenceSettore INF/01 - InformaticabiologyApplied MathematicsEpigeneticComputer Science ApplicationsChromatinNucleosomesmedicine.anatomical_structurelcsh:R858-859.7EukaryoteDNA microarrayDatabases Nucleic AcidComputational biologySaccharomyces cerevisiaelcsh:Computer applications to medicine. Medical informatics03 medical and health sciencesDeep LearningmedicineNucleosomeAnimalsHumansEpigeneticsMolecular BiologyGeneBase Sequencebusiness.industryDeep learningResearchReproducibility of Resultsbiology.organism_classificationYeastNucleosome classification Epigenetic Deep learning networks Recurrent neural networks030104 developmental biologylcsh:Biology (General)chemistryRecurrent neural networksROC CurveDeep learning networksArtificial intelligenceNeural Networks Computerbusiness030217 neurology & neurosurgeryDNABMC Bioinformatics
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Deep learning network for exploiting positional information in nucleosome related sequences

2017

A nucleosome is a DNA-histone complex, wrapping about 150 pairs of double-stranded DNA. The role of nucleosomes is to pack the DNA into the nucleus of the Eukaryote cells to form the Chromatin. Nucleosome positioning genome wide play an important role in the regulation of cell type-specific gene activities. Several biological studies have shown sequence specificity of nucleosome presence, clearly underlined by the organization of precise nucleotides substrings. Taking into consideration such advances, the identification of nucleosomes on a genomic scale has been successfully performed by DNA sequence features representation and classical supervised classification methods such as Support Vec…

0301 basic medicineComputer scienceSpeech recognitionCell02 engineering and technologyComputational biologyGenomeDNA sequencing03 medical and health scienceschemistry.chemical_compoundDeep Learning0202 electrical engineering electronic engineering information engineeringmedicineNucleosomeNucleotideGeneSettore ING-INF/05 - Sistemi Di Elaborazione Delle Informazionichemistry.chemical_classificationSequenceSettore INF/01 - Informaticabiologybusiness.industryDeep learningnucleosomebiology.organism_classificationSubstringChromatinIdentification (information)030104 developmental biologymedicine.anatomical_structurechemistry020201 artificial intelligence & image processingEukaryoteNucleosome classification Epigenetic Deep learning networks Recurrent Neural NetworksArtificial intelligencebusinessDNA
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Deep Learning Architectures for DNA Sequence Classification

2017

DNA sequence classification is a key task in a generic computational framework for biomedical data analysis, and in recent years several machine learning technique have been adopted to successful accomplish with this task. Anyway, the main difficulty behind the problem remains the feature selection process. Sequences do not have explicit features, and the commonly used representations introduce the main drawback of the high dimensionality. For sure, machine learning method devoted to supervised classification tasks are strongly dependent on the feature extraction step, and in order to build a good representation it is necessary to recognize and measure meaningful details of the items to cla…

0301 basic medicineComputer sciencebusiness.industryProcess (engineering)Deep learningFeature extractionFeature selection02 engineering and technologyMachine learningcomputer.software_genreConvolutional neural networkTask (project management)03 medical and health sciences030104 developmental biologyRecurrent neural network0202 electrical engineering electronic engineering information engineering020201 artificial intelligence & image processingArtificial intelligenceRepresentation (mathematics)businesscomputer
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Remarks on GRN-type systems

2020

Systems of ordinary differential equations that appear in gene regulatory networks theory are considered. We are focused on asymptotical behavior of solutions. There are stable critical points as well as attractive periodic solutions in two-dimensional and three-dimensional systems. Instead of considering multiple parameters (10 in a two-dimensional system) we focus on typical behaviors of nullclines. Conclusions about possible attractors are made.

0301 basic medicineComputer sciencelcsh:RGeneral EngineeringGene regulatory networkattractorslcsh:MedicineType (model theory)Nullcline03 medical and health sciences030104 developmental biology0302 clinical medicineordinary differential equations030220 oncology & carcinogenesisOrdinary differential equationAttractorgenetic regulatory networksApplied mathematicslcsh:Qlcsh:ScienceFocus (optics)4open
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Un barrio marginado no es un barrio marginal. A propósito de Nazaret (Valencia)

2016

This article takes us to Nazaret, an outlying district on Valencia’s waterfront which we consider from three complementary perspectives: the synchronic vision of its current socio-spatial structure, the diachronic and processual contextualization of the changes it has undergone in the last century, and the perceptions and images which characterize the neighbourhood, together with the features, activity and incidence of its associative fabric. The analysis focuses on the behaviour of a set of interconnected factors, including the impact of the port and urban development policy, its socioeconomic make-up, the consistency of its associative fabric and its relations with government. Whereas the…

0301 basic medicineCultural Studieslcsh:Ethnology. Social and cultural anthropologyLinguistics and LanguageWaterfrontLanguage and Linguistics03 medical and health sciencesGN301-6740302 clinical medicinePrecarizaciónUrban planningMovimientos urbanosDynamismSociologyLocal councilMarginalizationNeighbourhood (mathematics)Socioeconomic statusFrente marítimoContextualizationMarginaciónNeighbourhood EffectsSociologia urbanaEfectos de barrioEthnology. Social and cultural anthropologylcsh:GN301-674030104 developmental biologyEconomyUrban Movements030220 oncology & carcinogenesisOutlying DistrictsBarrios periféricosPrecariousnessSocial vulnerabilityRevista de Dialectología y Tradiciones Populares
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