Search results for "reproducibility of results"

showing 10 items of 1838 documents

Use of semipermeable membrane devices for monitoring pesticides in indoor air.

2009

Abstract In this work, 40 pesticides from different categories were analyzed in the air of 20 indoor places that have an intensive use of pesticides. Passive sampling was carried out by using semipermeable membrane devices (SPMDs) deployed for 7 days. SPMDs were analyzed using microwave-assisted extraction and GC/MS. PCB-195 was used as an internal standard. Recoveries ranged between 81 and 108 for many compounds, with RSD values <11. Typical LOD values for 7 days of sampling were from 0.1 to 3.1 ng/m. Propamocarb, propoxur, carbosulfan, pirimicarb, metribuzin, metalaxyl, pendimethalin, oxadiazon, phenothrin, and permethrin were detected in 11 sampling sites, with air concentrations …

Time FactorsPirimicarbChemistry Techniques AnalyticalGas Chromatography-Mass SpectrometryPermeabilityAnalytical Chemistrychemistry.chemical_compoundmedicineEnvironmental ChemistryPesticidesPharmacologyAir PollutantsPesticide residueReproducibility of ResultsMembranes ArtificialEquipment DesignPesticidePropoxurModels TheoreticalchemistryEnvironmental chemistryAir Pollution IndoorCalibrationPropamocarbCarbosulfanPhenothrinAgronomy and Crop ScienceFood SciencePermethrinmedicine.drugEnvironmental MonitoringJournal of AOAC International
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High-throughput sequencing of RNA silencing-associated small RNAs in olive (Olea europaea L.).

2011

14 páginas, 5 figuras, 3 tablas, S4 figuras, S2 tablas

Time FactorsScienceMolecular Sequence DataSequence DatabasesPlant ScienceBiologyDeep sequencingTranscriptomesRNA interferenceGene Expression Regulation PlantGenome Analysis ToolsOleaGene expressionmicroRNAGenome DatabasesPlant GenomicsGene silencingGene Regulatory NetworksGenome SequencingBiologyConserved SequenceGeneticsPlant Growth and DevelopmentMultidisciplinaryPolymorphism GeneticBase SequenceReverse Transcriptase Polymerase Chain ReactionSequence Analysis RNAGene Expression ProfilingQRRNAGene Expression Regulation DevelopmentalHigh-Throughput Nucleotide SequencingReproducibility of ResultsGenomicsOlive treesFunctional GenomicsRNA silencingMicroRNAsRNA PlantSmall MoleculesMedicineRNA InterferenceResearch ArticleBiotechnologyDevelopmental BiologyPloS one
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Long-term stability study of clofarabine injection concentrate and diluted clofarabine infusion solutions

2011

Purpose: The aim of this study was to investigate the physicochemical stability of clofarabine (CAFdA) injection concentrate and ready-to-use CAFdA infusion solutions over a prolonged period of 28 days. Methods: To determine the stability of CAFdA infusion solutions, the injection concentrate (Evoltra®, 1 mg/mL, Genzyme) was diluted either with 0.9% sodium chloride or 5% glucose infusion solution. The resulting concentrations of 0.2 mg/mL or 0.6 mg/mL, respectively, were chosen to represent the lower and upper limit of the ordinary concentration range. Test solutions were stored under refrigeration (2–8°C) or at room temperature either light protected or exposed to light. CAFdA concentrati…

Time FactorsStability studyDrug StorageSodiumchemistry.chemical_elementAntineoplastic AgentsInjection concentratechemistry.chemical_compoundGlucose infusionDrug StabilitymedicineClofarabinePharmacology (medical)Clofarabine InjectionInfusions IntravenousChromatography High Pressure LiquidChromatographyAdenine Nucleotidesbusiness.industryReproducibility of ResultsPolyethylenePharmaceutical SolutionsPolyvinyl chlorideOncologychemistryArabinonucleosidesbusinessClofarabinemedicine.drugJournal of Oncology Pharmacy Practice
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Respiratory mechanics measured by forced oscillations during mechanical ventilation through a tracheal tube

2011

The forced oscillation technique (FOT) allows the measurement of respiratory mechanics in the intensive care setting. The aim of this study was to compare the FOT with a reference method during mechanical ventilation through a tracheal tube. The respiratory impedance spectra were measured by FOT in nine anaesthetized pigs, and resistance and compliance were estimated on the basis of a linear resistance-compliance inertance model. In comparison, resistance and compliance were quantified by the multiple linear regression analysis (LSF) of conventional ventilator waveforms to the equation of motion. The resistance of the sample was found to range from 6 to 21 cmH(2)O s l(-1) and the compliance…

Time FactorsSwinePhysiologyCoefficient of variationmedicine.medical_treatmentBiomedical EngineeringBiophysicsRespiratory physiologyPulmonary complianceForced Oscillation TechniquePhysiology (medical)Intensive careStatisticsmedicineAnimalsLung ComplianceMathematicsMechanical ventilationbusiness.industryReproducibility of ResultsRepeatabilityReference Standardsrespiratory systemRespiration ArtificialInertanceTracheaRespiratory MechanicsNuclear medicinebusinessPhysiological Measurement
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Elucidating the aryl hydrocarbon receptor antagonism from a chemical-structural perspective.

2020

The aryl hydrocarbon receptor (AhR) plays an important role in several biological processes such as reproduction, immunity and homoeostasis. However, little is known on the chemical-structural and physicochemical features that influence the activity of AhR antagonistic modulators. In the present report, in vitro AhR antagonistic activity evaluations, based on a chemical-activated luciferase gene expression (AhR-CALUX) bioassay, and an extensive literature review were performed with the aim of constructing a structurally diverse database of contaminants and potentially toxic chemicals. Subsequently, QSAR models based on Linear Discriminant Analysis and Logistic Regression, as well as two tox…

ToxicophoreModels MolecularQuantitative structure–activity relationshipCell SurvivalRecombinant Fusion ProteinsQuantitative Structure-Activity RelationshipBioengineeringComputational biology01 natural sciencesSmall Molecule LibrariesCell Line TumorDrug DiscoveryCALUXBioassayAnimalsToxicologiaLuciferase GeneLuciferasesbiology010405 organic chemistryChemistryRobustness (evolution)Reproducibility of ResultsGeneral Medicinerespiratory systemAryl hydrocarbon receptor0104 chemical sciences010404 medicinal & biomolecular chemistryEstructura químicaReceptors Aryl Hydrocarbonbiology.proteinMolecular MedicineEnvironmental PollutantsAntagonismProteïnesSAR and QSAR in environmental research
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Testing experimental designs in liquid chromatography (II): Influence of the design geometry on the prediction performance of retention models.

2021

Abstract In liquid chromatography, the reliability of predictions carried out with retention models depends critically on the quality of the training experimental design. The search of the best design is more complex when gradient runs are used instead of isocratic experiments. In Part I of this work (JCA 1624 (2020) 461180), a general methodology based on the error propagation theory was developed and validated for assessing the quality of training designs involving gradients. The treatment relates the mathematical properties of a retention model with the geometry of the training designs and their subsequent predictions. In that work, only five usual designs were considered. Part II invest…

Training designPropagation of uncertaintyBox plotChromatographyChemistryDesign of experimentsOrganic ChemistryWork (physics)Mathematical propertiesReproducibility of ResultsGeometryGeneral MedicineBiochemistryAnalytical ChemistryDistribution (mathematics)Models ChemicalResearch DesignReliability (statistics)Chromatography LiquidJournal of chromatography. A
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Estimation of significant solvent concentration ranges and its application to the enhancement of the accuracy of gradient predictions.

2004

Abstract The solvent concentration range actually useful for gradient predictions is significantly narrower than the total range scanned in a gradient run. This range, called “solvent informative range” (SIR), if known with the highest accuracy, allows to predict gradient retention times ( t g ) with minimal error. The small size of the SIR supports the application of the linear solvent strength theory (LSST). Furthermore, LSST allows a closed-form solution to the integral required to predict gradient retention times, which eliminates numerical integration, needed with other retention models. A methodology that calculates the SIR by applying error analysis, and uses it to improve the accura…

Training setChromatographyChemistryElutionOrganic ChemistryMode (statistics)Reproducibility of ResultsGeneral MedicineBiochemistryAnalytical ChemistryNumerical integrationSolventError analysisRange (statistics)SolventsIndicators and ReagentsConstant (mathematics)AlgorithmsJournal of chromatography. A
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Detection, validation, and downstream analysis of allelic variation in gene expression.

2009

AbstractCommon sequence variants within a gene often generate important differences in expression of corresponding mRNAs. This high level of local (allelic) control—or cis modulation—rivals that produced by gene targeting, but expression is titrated finely over a range of levels. We are interested in exploiting this allelic variation to study gene function and downstream consequences of differences in expression dosage. We have used several bioinformatics and molecular approaches to estimate error rates in the discovery of cis modulation and to analyze some of the biological and technical confounds that contribute to the variation in gene expression profiling. Our analysis of SNPs and alter…

Transcription GeneticQuantitative Trait LociGene ExpressionQuantitative trait locusBiologyInvestigationsPolymerase Chain ReactionPolymorphism Single NucleotideMiceGene mappingGene expressionDatabases GeneticGeneticsAnimalsHumansRNA MessengerGene3' Untranslated RegionsAllelesOligonucleotide Array Sequence AnalysisGeneticsGene Expression ProfilingAlternative splicingGene targetingComputational BiologyReproducibility of ResultsSequence Analysis DNAGene expression profilingAlternative SplicingExpression quantitative trait lociGenetics
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A compound-based proteomic approach discloses 15-ketoatractyligenin methyl ester as a new PPARγ partial agonist with anti-proliferative ability

2017

AbstractProteomics based approaches are emerging as useful tools to identify the targets of bioactive compounds and elucidate their molecular mechanisms of action. Here, we applied a chemical proteomic strategy to identify the peroxisome proliferator-activated receptor γ (PPARγ) as a molecular target of the pro-apoptotic agent 15-ketoatractyligenin methyl ester (compound 1). We demonstrated that compound 1 interacts with PPARγ, forms a covalent bond with the thiol group of C285 and occupies the sub-pocket between helix H3 and the β-sheet of the ligand-binding domain (LBD) of the receptor by Surface Plasmon Resonance (SPR), mass spectrometry-based studies and docking experiments. 1 displayed…

Transcriptional Activation0301 basic medicinenatural productTime FactorsPeroxisome proliferator-activated receptorApoptosisLigandsPartial agonistArticleRosiglitazonePPAR_gammaJurkat Cells03 medical and health sciencesTransactivation0302 clinical medicineproteomicsHumansBinding siteReceptorMode of actionPI3K/AKT/mTOR pathwayCell Proliferationchemistry.chemical_classificationBinding SitesMultidisciplinaryProtein StabilityProtein Proliferator-Activated-Receptor PPARs Ligand-Binding Domain Chemical Proteomics Accurate Docking Pi3k/Akt Pathway Drug Discovery Anticancer compoundsReproducibility of ResultsEstersSurface Plasmon ResonanceMolecular Docking SimulationPPAR gammaKineticsHEK293 Cells030104 developmental biologychemistryBiochemistryDocking (molecular)030220 oncology & carcinogenesisThermodynamicsThiazolidinedionesproteomics PPAR_gamma natural productDiterpenes KauraneHT29 CellsScientific Reports
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Erythropoietin and its lost receptor [8]

2007

TransplantationTumorReproducibility of ResultsImmunohistochemistrySensitivity and SpecificityAntibodiesCell LineRatsMiceerytropoietinKidney TubulesAnti-IdiotypicNephrologyReceptorsAnimalsHumansRabbitsAnimals; Cell Line Tumor; Erythropoietin; Humans; Immunohistochemistry; Kidney Tubules; Mice; Rabbits; Rats; Receptors Erythropoietin; Reproducibility of Results; Sensitivity and Specificity; Antibodies Anti-Idiotypic; Nephrology; TransplantationErythropoietin
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