Search results for "research article"

showing 10 items of 4621 documents

Distribution, diversity patterns and faunogenesis of the millipedes (Diplopoda) of the Himalayas

2018

The Himalayas support a highly rich, diverse, multi-layered, mostly endemic diplopod fauna which presently contains >270 species, 53 genera, 23 families and 13 orders. This is the result of mixing the ancient, apparently Tertiary and younger, Plio-Pleistocene elements of various origins, as well as the most recent anthropochore (= man-mediated) introductions. At the species and, partly, generic levels, the fauna is largely autochthonous and sylvicolous, formed through aboundingin situradiation and vicariance events. In general, the species from large genera and families tend to occupy a wide range of altitudes, but nearly each of the constituent species shows a distribution highly lo…

0106 biological sciencesSympatryAsiaArthropodaRange (biology)Fauna010607 zoologyDistribution (economics)010603 evolutionary biology01 natural sciencesDiplopodalcsh:ZoologyVicariancefaunisticsAnimalialcsh:QL1-991Ecology Evolution Behavior and Systematicsbusiness.industryEcologyPlio-PleistocenePalaearcticGeographyPlio-PleistoceneAnimal Science and ZoologybusinessResearch Article
researchProduct

Reconstruction and analysis of genome-scale metabolic model of a photosynthetic bacterium

2010

Abstract Background Synechocystis sp. PCC6803 is a cyanobacterium considered as a candidate photo-biological production platform - an attractive cell factory capable of using CO2 and light as carbon and energy source, respectively. In order to enable efficient use of metabolic potential of Synechocystis sp. PCC6803, it is of importance to develop tools for uncovering stoichiometric and regulatory principles in the Synechocystis metabolic network. Results We report the most comprehensive metabolic model of Synechocystis sp. PCC6803 available, iSyn669, which includes 882 reactions, associated with 669 genes, and 790 metabolites. The model includes a detailed biomass equation which encompasses…

0106 biological sciencesSystems biologyIn silicoMetabolic networkComputational biologyBiologyModels Biological01 natural sciencesMetabolic engineeringGene Knockout Techniques03 medical and health sciencesStructural BiologyModelling and Simulation010608 biotechnologyBotanyBiomassPhotosynthesislcsh:QH301-705.5Molecular Biology030304 developmental biologyAutotrophic Processes0303 health sciencesGene Expression ProfilingApplied MathematicsSynechocystisSynechocystisGenomicsDarknessbiology.organism_classificationComputer Science ApplicationsFlux balance analysislcsh:Biology (General)Genes BacterialAutotrophic ProcessesModeling and SimulationEnergy sourceGenome BacterialResearch ArticleBMC Systems Biology
researchProduct

Genome sequence of the pea aphid Acyrthosiphon pisum

2010

The genome of the pea aphid shows remarkable levels of gene duplication and equally remarkable gene absences that shed light on aspects of aphid biology, most especially its symbiosis with Buchnera.

0106 biological sciencesTANDEM REPEATSGenome InsectGene TransferRRES175Sequència genòmicaFaculty of Science\Computer ScienceCPG METHYLATION01 natural sciencesGenomeMedical and Health SciencesInternational Aphid Genomics ConsortiumBiologiska vetenskaperBiology (General)GENE-EXPRESSION2. Zero hungerGenetics0303 health sciencesAphidGenomeAfídidsGeneral NeuroscienceGENOME SEQUENCEfood and beveragesDROSOPHILA CIRCADIAN CLOCKBiological SciencesGenetics and Genomics/Microbial Evolution and GenomicsINSECTEGenètica microbianapuceronAPIS-MELLIFERAGeneral Agricultural and Biological SciencesInfectionsymbioseBiotechnologyResearch ArticleVIRUS VECTORING175_GeneticsSYMBIOTIC BACTERIAGene Transfer HorizontalQH301-705.5ACYRTHOSIPHON PISUMBiologyHOLOMETABOLOUS INSECTSHOST-PLANT010603 evolutionary biologyGENOME SEQUENCE;PEA APHID;ACYRTHOSIPHON PISUM;INSECT-PLANT;HOST-PLANT;VIRUS VECTORING;PHENOTYPIC PLASTICITY;HOLOMETABOLOUS INSECTS;INSECTE;RAVAGEUR DES CULTURES; SOCIAL INSECTGeneral Biochemistry Genetics and Molecular BiologyHorizontal03 medical and health sciencesBuchneraPHENOTYPIC PLASTICITYINSECT-PLANTGeneticsGene familyLife ScienceAnimalsSymbiosisGene030304 developmental biologyWhole genome sequencingGeneral Immunology and MicrobiologyAnnotation; Aphid; Genome sequenceAgricultural and Veterinary Sciences175_EntomologyGenètica animalBacteriocytegénomegèneHuman GenomePEA APHIDBiology and Life Sciences15. Life on landbiochemical phenomena metabolism and nutritionbiology.organism_classificationREPETITIVE ELEMENTSDNA-SEQUENCESAcyrthosiphon pisumGenome SequenceGenetics and Genomics/Genome ProjectsRAVAGEUR DES CULTURESAphidsPHEROMONE-BINDINGBuchneraInsectDevelopmental Biology[SDV.EE.IEO]Life Sciences [q-bio]/Ecology environment/Symbiosis
researchProduct

Shift in Tuna Catches due to Ocean Warming.

2017

Ocean warming is already affecting global fisheries with an increasing dominance of catches of warmer water species at higher latitudes and lower catches of tropical and subtropical species in the tropics. Tuna distributions are highly conditioned by sea temperature, for this reason and their worldwide distribution, their populations may be a good indicator of the effect of climate change on global fisheries. This study shows the shift of tuna catches in subtropical latitudes on a global scale. From 1965 to 2011, the percentage of tropical tuna in longliner catches exhibited a significantly increasing trend in a study area that included subtropical regions of the Atlantic and western Pacifi…

0106 biological sciencesTime Factors010504 meteorology & atmospheric sciencesEffects of global warming on oceanslcsh:MedicineMarine and Aquatic SciencesOceanographyGlobal Warming01 natural sciencesOceansTropical climateClimate changeZoologíaPesqueríaslcsh:ScienceIndian OceanNorthern HemisphereLatitudeMultidisciplinaryGeographyFishesTemperatureAgricultureOsteichthyesVertebratesResearch ArticleCartographyOceans and SeasFisheriesClimate changeSede Central IEOSubtropicsAnimalsVulnerability of tropical countries to climate change14. Life underwaterOcean TemperatureTropical tuna distribution0105 earth and related environmental sciencesTropical ClimatePacific OceanTuna010604 marine biology & hydrobiologylcsh:RGlobal warmingOrganismsBiology and Life SciencesTropicsNumerical Analysis Computer-AssistedBodies of WaterModels TheoreticalFisherySea surface temperatureEffect on fisheries13. Climate actionEarth SciencesEnvironmental sciencelcsh:QTunaGeographic areas
researchProduct

Trans-equatorial migration routes, staging sites and wintering areas of a High-Arctic avian predator: the Long-tailed Skua (Stercorarius longicaudus).

2013

The Long-tailed Skua, a small (,300 g) Arctic-breeding predator and seabird, is a functionally very important component of the Arctic vertebrate communities in summer, but little is known about its migration and winter distribution. We used lightlevel geolocators to track the annual movements of eight adult birds breeding in north-east Greenland (n = 3) and Svalbard (n = 5). All birds wintered in the Southern Hemisphere (mean arrival-departure dates on wintering grounds: 24 October-21 March): five along the south-west coast of Africa (0–40uS, 0–15uE), in the productive Benguela upwelling, and three further south (30–40uS, 0–50uE), in an area extending into the south-west Indian Ocean. Diffe…

0106 biological sciencesTime FactorsGreenlandlcsh:MedicinehabitatBreeding01 natural sciencesSkuaSvalbardMarine ConservationStercorarius longicaudusOrnithologyFlywayOceansmovementsnorth-atlanticlcsh:ScienceAtlantic Oceanatlantic-ocean[SDV.EE]Life Sciences [q-bio]/Ecology environmentMultidisciplinarygeography.geographical_feature_categoryEcologyAnimal BehaviorbiologyArctic RegionsEcologyMarine EcologydynamicstrackingGeographygeolocationBiogeographyclimate-changeSeasonsSeabirdrevealspelagic seabird;atlantic-ocean;north-atlantic;climate-change;tracking;dynamics;geolocation;movements;reveals;habitatResearch Articlepelagic seabirdMarine Biology010603 evolutionary biology[ SDV.EE ] Life Sciences [q-bio]/Ecology environmentBirdsbiology.animalAnimals14. Life underwaterBiologySouthern Hemisphere[ SDE.BE ] Environmental Sciences/Biodiversity and Ecology010604 marine biology & hydrobiologylcsh:Rbiology.organism_classificationMarine and aquatic sciencesFisheryEarth sciencesArcticPredatory BehaviorUpwellingAnimal Migrationlcsh:Q[SDE.BE]Environmental Sciences/Biodiversity and EcologyOceanic basinZoology
researchProduct

The irreducible uncertainty of the demography–environment interaction in ecology

2002

The interpretation of ecological data has been greatly improved by bridging the gap between ecological and statistical models. The major challenge is to separate competing hypotheses concerning demography, or other ecological relationships, and environmental variability (noise). In this paper we demonstrate that this may be an arduous, if not impossible, task. It is the lack of adequate ecological theory, rather than statistical sophistication, which leads to this problem. A reconstruction of underlying ecological processes can only be done if we are certain of either the demographic or the noise model, which is something that can only be achieved by an improved theory of stochastic ecologi…

0106 biological sciencesTime Factorsmedia_common.quotation_subjectPopulation DynamicsBiologyEcological systems theoryModels Biological010603 evolutionary biology01 natural sciencesGeneral Biochemistry Genetics and Molecular BiologyEcological relationshipEconometricsAnimalsNatural ecosystemEnvironmental noiseSophisticationEcosystemGeneral Environmental Sciencemedia_commonStochastic ProcessesModels StatisticalGeneral Immunology and MicrobiologyEcologyStochastic process010604 marine biology & hydrobiologySystem identificationStatistical modelGeneral MedicineBiological Sciences13. Climate actionGeneral Agricultural and Biological SciencesResearch ArticleDemographyProceedings of the Royal Society of London. Series B: Biological Sciences
researchProduct

The "Tracked Roaming Transect" and distance sampling methods increase the efficiency of underwater visual censuses.

2018

Underwater visual census (UVC) is the most common approach for estimating diversity, abundance and size of reef fishes in shallow and clear waters. Abundance estimation through UVC is particularly problematic in species occurring at low densities and/or highly aggregated because of their high variability at both spatial and temporal scales. The statistical power of experiments involving UVC techniques may be increased by augmenting the number of replicates or the area surveyed. In this work we present and test the efficiency of an UVC method based on diver towed GPS, the Tracked Roaming Transect (TRT), designed to maximize transect length (and thus the surveyed area) with respect to diving …

0106 biological sciencesTopographyMarine and Aquatic Scienceslcsh:Medicine01 natural sciences//purl.org/becyt/ford/1 [https]Abundance (ecology)StatisticsRange (statistics)Marine Fishlcsh:ScienceIslandsAbundance estimationMultidisciplinaryDistance samplingUnderwater visual censusesAnimal BehaviorEcologyCoral ReefsGeographic Information SystemFishesEukaryotaEstimatorBiodiversityResearch DesignVertebratesEngineering and TechnologyCoral ReefCIENCIAS NATURALES Y EXACTASHumanResearch ArticleEnvironmental MonitoringCensusAccuracy and precisionFish BiologyField experimentEquipmentMarine BiologyResearch and Analysis Methods010603 evolutionary biologyCiencias BiológicasFish PhysiologyAnimal PhysiologyAnimalsHumans14. Life underwater//purl.org/becyt/ford/1.6 [https]TransectVision OcularBehaviorLandformsSurvey ResearchAnimal010604 marine biology & hydrobiologyEcology and Environmental Scienceslcsh:ROrganismsBiology and Life SciencesGeomorphologyEcologíaVertebrate PhysiologyTracked roaming transectFishEarth SciencesReefsGeographic Information SystemsEnvironmental sciencelcsh:QZoologyFishePLoS ONE
researchProduct

Hydrology Affects Environmental and Spatial Structuring of Microalgal Metacommunities in Tropical Pacific Coast Wetlands

2016

The alternating climate between wet and dry periods has important effects on the hydrology and therefore on niche-based processes of water bodies in tropical areas. Additionally, assemblages of microorganism can show spatial patterns, in the form of a distance decay relationship due to their size or life form. We aimed to test spatial and environmental effects, modulated by a seasonal flooding climatic pattern, on the distribution of microalgae in 30 wetlands of a tropical dry forest region: the Pacific coast of Costa Rica and Nicaragua. Three surveys were conducted corresponding to the beginning, the highest peak, and the end of the hydrological year during the wet season, and species abun…

0106 biological sciencesTopographyMarine and Aquatic Scienceslcsh:MedicineWetlandNicaragua01 natural sciencesGeographical locationsFloodingTropical climateMicroalgaelcsh:ScienceMultidisciplinarygeography.geographical_feature_categoryGeographyEcologyPlantsPlanktonPlanktonGeography551.48 HidrologíaSeasonsResearch ArticleFreshwater EnvironmentsWet seasonTropical and subtropical dry broadleaf forestsCosta RicaHidrologíaAlgaePacífico tropical010603 evolutionary biologySurface WaterAnimalsRelative species abundanceHydrologyDistance decayLandformsTropical ClimatePacific Ocean010604 marine biology & hydrobiologyEcology and Environmental Scienceslcsh:ROrganismsAquatic EnvironmentsBiology and Life SciencesGeomorphologyCentral AmericaInvertebratesWetlandsPhytoplanktonNorth AmericaEarth SciencesSpatial ecologylcsh:QHydrologyPeople and places
researchProduct

A molecular phylogeny for the leaf-roller moths (Lepidoptera: Tortricidae) and its implications for classification and life history evolution.

2012

BackgroundTortricidae, one of the largest families of microlepidopterans, comprise about 10,000 described species worldwide, including important pests, biological control agents and experimental models. Understanding of tortricid phylogeny, the basis for a predictive classification, is currently provisional. We present the first detailed molecular estimate of relationships across the tribes and subfamilies of Tortricidae, assess its concordance with previous morphological evidence, and re-examine postulated evolutionary trends in host plant use and biogeography.Methodology/principal findingsWe sequenced up to five nuclear genes (6,633 bp) in each of 52 tortricids spanning all three subfamil…

0106 biological sciencesTortricidaeGenetic SpeciationScienceZoologyChlidanotinaeGenes InsectMothsAnimal Phylogenetics010603 evolutionary biology01 natural sciencesEvolution MolecularMonophylyPhylogeneticsAnimalsEvolutionary SystematicsOlethreutinaeBiologyPhylogenyLikelihood FunctionsEvolutionary BiologyMultidisciplinarybiologyPhylogenetic treeEcologyQRComputational BiologyAgricultureBiodiversityAutecologybiology.organism_classificationPhylogenetics010602 entomologyBiogeographyEvolutionary biologyAnimal TaxonomyMolecular phylogeneticsMedicinePest ControlSequence AnalysisZoologyEntomologyTortricinaeMultilocus Sequence TypingResearch ArticlePloS one
researchProduct

Two new species of Brusqeulia Razowski & Becker, 2000 from the Neotropics, with comments on the systematic position of the genus in relation to the A…

2018

Two new species of the neotropical genus Brusqeulia Razowski & Becker, 2000, are described and illustrated: B.yunkensis Pérez Santa-Rita & Baixeras, sp. n. from Bolivia and B.araguensis Pérez Sant-Rita & Baixeras, sp. n. from Venezuela. The systematic position and diagnostic characters of the genus are reviewed, resulting in the synonymy of Pinhaisania Razowski & Becker, 2000, with Brusqeulia, and the combination B.crispula (Razowski & Becker, 2000), comb. n. New characters of the female genitalia are discussed.

0106 biological sciencesTortricidaeSystematics010607 zoologyZoologyBrusqeuliaCochylini010603 evolutionary biology01 natural sciencesyunkensisLepidoptera genitaliataxonomyGenusBrusqeulia yunkensislcsh:ZoologyTortricidaeAnimalialcsh:QL1-991systematicsEcology Evolution Behavior and SystematicsBrusqeulia araguensisbiologysubpapillar scleriteSouth Americabiology.organism_classificationEuliinaApolychrosisLepidopteraAnimal Science and ZoologyTaxonomy (biology)araguensisResearch ArticleZooKeys
researchProduct