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showing 10 items of 2426 documents

Modified Operators Interpolating at Endpoints

2021

Some classical operators (e.g., Bernstein) preserve the affine functions and consequently interpolate at the endpoints. Other classical operators (e.g., Bernstein–Durrmeyer) have been modified in order to preserve the affine functions. We propose a simpler modification with the effect that the new operators interpolate at endpoints although they do not preserve the affine functions. We investigate the properties of these modified operators and obtain results concerning iterates and their limits, Voronovskaja-type results and estimates of several differences.

General MathematicsOrder (ring theory)iteratesIterated functionMarkov operatorsComputer Science (miscellaneous)QA1-939Applied mathematicsdifferences of operatorsAffine transformationEngineering (miscellaneous)MathematicsMathematicsVoronovskaja-type resultsMathematics
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MGFM: a novel tool for detection of tissue and cell specific marker genes from microarray gene expression data

2015

Background Identification of marker genes associated with a specific tissue/cell type is a fundamental challenge in genetic and cell research. Marker genes are of great importance for determining cell identity, and for understanding tissue specific gene function and the molecular mechanisms underlying complex diseases. Results We have developed a new bioinformatics tool called MGFM (Marker Gene Finder in Microarray data) to predict marker genes from microarray gene expression data. Marker genes are identified through the grouping of samples of the same type with similar marker gene expression levels. We verified our approach using two microarray data sets from the NCBI’s Gene Expression Omn…

Genetic MarkersCancer ResearchMicroarraysBiologyMarker genesWeb BrowserProteomicsMarker geneBioconductorGeneticsGeneGenetic Association StudiesGeneticsMicroarray analysis techniquesMethodology ArticleGene Expression ProfilingComputational BiologyReproducibility of Results3. Good healthGene expression profilingSamplesGene OntologyGenetic markerOrgan SpecificityDNA microarrayBiotechnologyBMC Genomics
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Interest of exome sequencing trio-like strategy based on pooled parental DNA for diagnosis and translational research in rare diseases.

2021

Abstract Background Exome sequencing (ES) has become the most powerful and cost‐effective molecular tool for deciphering rare diseases with a diagnostic yield approaching 30%–40% in solo‐ES and 50% in trio‐ES. We applied an innovative parental DNA pooling method to reduce the parental sequencing cost while maintaining the diagnostic yield of trio‐ES. Methods We pooled six (Agilent‐CRE‐v2–100X) or five parental DNA (TWIST‐HCE–70X) aiming to detect allelic balance around 8–10% for heterozygous status. The strategies were applied as second‐tier (74 individuals after negative solo‐ES) and first‐tier approaches (324 individuals without previous ES). Results The allelic balance of parental‐pool v…

Genetic MarkersCost effectivenessTranslational researchBiologyQH426-470Sensitivity and SpecificityWorkflowTranslational Research Biomedicalchemistry.chemical_compoundsymbols.namesakeExome SequencingFalse positive paradoxGeneticsHumansDna poolingGenetic Predisposition to DiseaseGenetic TestingAlleleMolecular BiologyGenetics (clinical)Exome sequencingtrio‐like strategy; parental‐pool strategyGeneticsSanger sequencingcost effectivenessReproducibility of Resultsrare diseasesSequence Analysis DNAOriginal ArticleschemistryResearch DesignsymbolsOriginal ArticleDNAGenome-Wide Association StudyMolecular geneticsgenomic medicine
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Transgene detection by digital droplet PCR

2014

Somatic gene therapy is a promising tool for the treatment of severe diseases. Because of its abuse potential for performance enhancement in sports, the World Anti-Doping Agency (WADA) included the term 'gene doping' in the official list of banned substances and methods in 2004. Several nested PCR or qPCR-based strategies have been proposed that aim at detecting long-term presence of transgene in blood, but these strategies are hampered by technical limitations. We developed a digital droplet PCR (ddPCR) protocol for Insulin-Like Growth Factor 1 (IGF1) detection and demonstrated its applicability monitoring 6 mice injected into skeletal muscle with AAV9-IGF1 elements and 2 controls over a 3…

Genetics and Molecular Biology (all)Gene Identification and AnalysisGene TransferBiochemistryPolymerase Chain Reaction796 Athletic and outdoor sports and gamesMiceMedicine and Health SciencesTransgenesInsulin-Like Growth Factor IIntramuscularMedicine (all)QRDependovirusDependoviruMedicineGenetic VectorResearch ArticleBiotechnologyHumanScienceGenetic VectorsReproducibility of ResultIn Vitro TechniquesInjections IntramuscularInjectionsBiomaterialsMolecular GeneticsTransgeneAnimals; Dependovirus; Erythropoietin; Genetic Vectors; Humans; In Vitro Techniques; Injections Intramuscular; Insulin-Like Growth Factor I; Mice; Polymerase Chain Reaction; Reproducibility of Results; Transgenes; Agricultural and Biological Sciences (all); Biochemistry Genetics and Molecular Biology (all); Medicine (all)Genetic ElementsGeneticsAnimalsHumansSports and Exercise MedicineMolecular Biology TechniquesMolecular BiologyErythropoietinClinical GeneticsBiochemistry Genetics and Molecular Biology (all)796 SportAnimalIn Vitro TechniqueGene AmplificationBiology and Life SciencesReproducibility of ResultsHuman GeneticsDNAAgricultural and Biological Sciences (all)Mutation
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Chronic Apical and Nonapical Right Ventricular Pacing in Patients with High-Grade Atrioventricular Block: Results of the Right Pace Study

2018

Objective. The aim of the study was to compare the two approaches to chronic right ventricular pacing currently adopted in clinical practice: right ventricular apical (RVA) and non-RVA pacing. Background. Chronic RVA pacing is associated with an increased risk of atrial fibrillation, morbidity, and even mortality. Non-RVA pacing may yield more physiologic ventricular activation and provide potential long-term benefits and has recently been adopted as standard procedure at many implanting centers. Methods. The Right Pace study was a multicenter, prospective, single-blind, nonrandomized trial involving 437 patients indicated for dual-chamber pacemaker implantation with a high percentage of RV…

Genetics and Molecular Biology (all)Malemedicine.medical_specialtyArticle SubjectImmunology and Microbiology (all)Heart Ventricleslcsh:Medicine030204 cardiovascular system & hematologyBiochemistryGeneral Biochemistry Genetics and Molecular Biology03 medical and health sciences0302 clinical medicineInternal medicinemedicine80 and overHumansIn patientSingle-Blind Method030212 general & internal medicineInterventricular septumProspective StudiesAtrioventricular BlockAgedAged 80 and overGeneral Immunology and Microbiologybusiness.industrylcsh:RCardiac Pacing ArtificialReproducibility of ResultsAtrial fibrillationGeneral MedicineVentricular pacingmedicine.diseaseIncreased riskmedicine.anatomical_structureHigh grade atrioventricular blockTreatment OutcomeBaseline characteristicsHeart failureArtificialCardiologyClinical StudyQuality of LifeCardiac PacingFemalebusinessAged; Aged 80 and over; Female; Heart Ventricles; Humans; Male; Prospective Studies; Quality of Life; Reproducibility of Results; Single-Blind Method; Treatment Outcome; Atrioventricular Block; Cardiac Pacing Artificial; Biochemistry Genetics and Molecular Biology (all); Immunology and Microbiology (all)BioMed Research International
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A glimpse of gluons through deeply virtual compton scattering on the proton

2017

The internal structure of nucleons (protons and neutrons) remains one of the greatest outstanding problems in modern nuclear physics. By scattering high-energy electrons off a proton we are able to resolve its fundamental constituents and probe their momenta and positions. Here we investigate the dynamics of quarks and gluons inside nucleons using deeply virtual Compton scattering (DVCS)—a highly virtual photon scatters off the proton, which subsequently radiates a photon. DVCS interferes with the Bethe-Heitler (BH) process, where the photon is emitted by the electron rather than the proton. We report herein the full determination of the BH-DVCS interference by exploiting the distinct energ…

Genetics and Molecular Biology (all)PhotonProtonHigh Energy Physics::LatticeNuclear TheoryGeneral Physics and AstronomyVirtual particleparton: distribution functionBiochemistry01 natural sciencesHigh Energy Physics - ExperimentHigh Energy Physics - Experiment (hep-ex)High Energy Physics - Phenomenology (hep-ph)[PHYS.HEXP]Physics [physics]/High Energy Physics - Experiment [hep-ex]p: structure functionNuclear Experiment (nucl-ex)[ PHYS.NEXP ] Physics [physics]/Nuclear Experiment [nucl-ex]lcsh:ScienceNuclear ExperimentNuclear ExperimentPhysicsenergy: highMultidisciplinarystrong interactionChemistry (all)QCompton scattering: form factorphoton: energy spectrumHigh Energy Physics - Phenomenologyconfinementelectron p --> electron p photonchannel cross section: measuredQuarkelectron p: deep inelastic scatteringParticle physicselectron: polarized beamScienceStrong interactionFOS: Physical sciencesBethe-Heitler[PHYS.NEXP]Physics [physics]/Nuclear Experiment [nucl-ex]ArticleGeneral Biochemistry Genetics and Molecular Biologyenergy dependencequarkPhysics and Astronomy (all)[ PHYS.HEXP ] Physics [physics]/High Energy Physics - Experiment [hep-ex]photon: emissiondeeply virtual Compton scattering0103 physical sciencesstructure010306 general physicsquantum mechanics: interference010308 nuclear & particles physicsHigh Energy Physics::PhenomenologyCompton scatteringGeneral ChemistrygluonsensitivityGluon[PHYS.HPHE]Physics [physics]/High Energy Physics - Phenomenology [hep-ph]Quark–gluon plasmalcsh:Q[ PHYS.HPHE ] Physics [physics]/High Energy Physics - Phenomenology [hep-ph]High Energy Physics::ExperimentholographyChemistry (all); Biochemistry Genetics and Molecular Biology (all); Physics and Astronomy (all)photon: virtualexperimental results
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Motor and linguistic linking of space and time in the cerebellum

2009

Background: Recent literature documented the presence of spatial-temporal interactions in the human brain. The aim of the present study was to verify whether representation of past and future is also mapped onto spatial representations and whether the cerebellum may be a neural substrate for linking space and time in the linguistic domain. We asked whether processing of the tense of a verb is influenced by the space where response takes place and by the semantics of the verb. Principal Findings: Responses to past tense were facilitated in the left space while responses to future tense were facilitated in the right space. Repetitive transcranial magnetic stimulation (rTMS) of the right cereb…

Genetics and Molecular Biology (all)Time FactorsNeural substratelcsh:MedicinePoison controlSpace (commercial competition)LinguisticBiochemistryVocabularyPsycholinguisticsAdult; Brain Mapping; Cerebellum; Humans; Language; Motor Skills; Psycholinguistics; Reaction Time; Reproducibility of Results; Semantics; Time Factors; Transcranial Magnetic Stimulation; Verbal Behavior; Vocabulary; Linguistics; Biochemistry Genetics and Molecular Biology (all); Agricultural and Biological Sciences (all)Cerebellumlcsh:ScienceMotor skilltimeLanguageMotor SkillBrain MappingMultidisciplinaryNeuroscience/Behavioral NeurosciencePsycholinguisticsMedicine (all)PsycholinguisticTranscranial Magnetic StimulationLinguisticsNeuroscience/Experimental PsychologySemanticsNeuroscience/PsychologyMotor Skillsspace; time; past; future; cerebellumPsycholinguistics; Verbal Behavior; Reproducibility of Results; Humans; Cerebellum; Vocabulary; Motor Skills; Semantics; Brain Mapping; Adult; Language; Linguistics; Time Factors; Transcranial Magnetic Stimulation; Reaction TimeSettore MED/26 - NeurologiaResearch ArticleHumanfutureAdultTime FactorReproducibility of ResultVerbBiologySemanticsNONeurolinguisticsReaction TimeHumanspastNeuroscience/Cognitive NeuroscienceBiochemistry Genetics and Molecular Biology (all)Settore M-PSI/02 - Psicobiologia E Psicologia FisiologicaVerbal Behaviorlcsh:RReproducibility of ResultsLinguisticsspacecerebellum language spaceAgricultural and Biological Sciences (all)lcsh:QSemantic
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Report of the European DNA profiling group (EDNAP): an investigation of the complex STR loci D21S11 and HUMFIBRA (FGA).

1997

This paper describes a collaborative exercise which was intended to demonstrate whether uniformity of DNA profiling results could be achieved between European laboratories using two complex short tandem repeat (STR) loci. The loci D21S11 and HUMFIBRA (FGA) were chosen because they are commonly used by different European laboratories. D21S11 has approximately 14 common alleles (f > 0.001), whereas HUMFIBRA has 19 common alleles. Laboratories were asked to test seven blood stains, one of which was a known control, and to report the results to the coordinating laboratory. The exercise demonstrated that complex STRs were amenable to standardisation.

GeneticsBlood StainsRepetitive SequencesReproducibility of ResultsDNABiologyPathology and Forensic MedicineEuropeDNA profilingMulticenter studyGenetic markerStr lociMicrosatelliteHumansLaboratoriesLawAllelesDNA PrimersRepetitive Sequences Nucleic AcidForensic science international
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Report of the European DNA profiling group (EDNAP)-an investigation of the hypervariable STR loci ACTBP2, APOAI1 and D11S554 and the compound loci D1…

1999

This paper describes the results of three collaborative exercises which continues the EDNAP theme to explore whether uniformity of DNA profiling results could be achieved between European laboratories using STRs. In an earlier exercise, complex hypervariable AAAG-repeat STR loci were investigated, but reproducibility was found to be poor because of the variation of techniques used by participating laboratories. In the exercise reported here, an internal allelic ladder composed of ACTBP2 and D11S554 fragments was distributed. This ladder was used to size ACTBP2 analysed by a "singleplex" PCR amplification and D11S554 combined with APOAI1 in a separate "duplex" reaction. Laboratories were ask…

GeneticsInternational CooperationBlood StainsImmunoglobulin Variable RegionReproducibility of ResultsMinisatellite RepeatsDNA SatelliteBiologyDNA FingerprintingPolymerase Chain ReactionPathology and Forensic Medicinelaw.inventionEuropeDNA profilingMulticenter studylawGenetic markerStr lociHumansMicrosatelliteLawAllelesSocieties MedicalPolymerase chain reactionForensic Science International
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Results of collaborative study regarding the standardization of the Y-linked STR system DYS385 by the European DNA Profiling (EDNAP) group.

1999

Y-chromosome linked short tandem repeat (STR) loci are inherited as a closely linked haplotype, which appears to remain stable in a given paternal lineage over many generations. In forensic cases, Y-linked STRs are particularly useful for the identification of human remains as well as in rape cases with mixed male/female stain samples. DYS385 is derived from tandemly duplicated segments of the Y chromosome thus giving rise to two fragments of variable length which do not behave like alleles but genotypes. The European DNA Profiling (EDNAP) group has carried out a collaborative exercise among 14 participating laboratories using DYS385 for typing of five unknown bloodstains and a control samp…

GeneticsMaleGenetic LinkageSTR multiplex systemInternational CooperationHaplotypeReproducibility of ResultsMinisatellite RepeatsBiologyY chromosomeBlood Protein ElectrophoresisDNA FingerprintingPathology and Forensic MedicineEuropeGenetics PopulationDNA profilingBlood StainsY ChromosomeGenotypeY linkageMicrosatelliteHumansTypingLawForensic science international
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