Search results for "romi"

Fluorescence labeling of the photosensory unit of Deinococcus radiodurans bacteriophytochrome for Förster resonance energy transfer studies

2016

Fytokromit ovat bakteerien, levien, kasvien ja sienten punaista valoa aistivia proteiineja. Keskeinen piirre fytokromien toiminnassa on valon vaikutuksesta tapahtuva siirtymä punaista valoa absorboivan (Pr) ja kaukopunaista valoa absorboivan (Pfr) tilan välillä. Deinococcus radiodurans -bakteerifytokromin valosensoriosa (CBD-PHY) on dimeerinen proteiini, joka koostuu C-terminaalisesta kromoforia sitovasta domeenista (CBD) ja fytokromiin liittyvästä domeenista (PHY). Viimeaikaiset CBD-PHY:n kristalli- ja liuosrakenteet ovat osoittaneet, että PHY-domeenien välinen etäisyys kasvaa, kun proteiini siirtyy Pr-tilasta Pfr-tilaan absorboituaan punaista valoa. Tässä työssä suunniteltiin Försterin re…

Monomerisaation vaikutus Deinococcus radioduransin fytokromiin

2014

Fytokromit ovat yksi kolmesta fotomorfogeneesiä säätelevistä proteiiniperheistä. Niitä löytyy kasveista, bakteereista ja sienistä. Fytokromit reagoivat ympäristön muuttuviin valaistusolosuhteisiin, ja niiden tehtäviin kuuluvat muun muassa kasveilla siementen kehittymisen ja bakteereilla solusyklin säätely. Luonnossa fytokromi esiintyy homodimeerinä. Fytokromin perusrakenne koostuu kromoforin sisältävästä fotoreseptorialueesta sekä signalointialueesta, joka välittää tiedon valaistusolosuhteiden muuttumisesta solussa eteenpäin. Tässä tutkielmassa käytetyn Deinococcus radiodurans -bakteerin bakteerifytokromin fotoreseptorialueen runko rakentuu Per/Arndt/Sim (PAS) ja cGMP fosfodiesteraasi/adeny…

Conserved histidine and tyrosine determine spectral responses through the water network in Deinococcus radiodurans phytochrome

2022

Funding Information: This work was supported by Academy of Finland grants 285461 (H.T.), 330678 (H.T., J.R.), 277194 (H.L.), and 290677 (S.M.). We acknowledge the European Synchrotron Radiation Facility (ESRF) for providing synchrotron access for crystal data collection. We thank Prof. Janne Ihalainen (University of Jyväskylä) for all the help in all aspects of the paper, Prof. Gerrit Groenhof (University of Jyväskylä) for support, and Prof. Nikolai V. Tkachenko (Tampere University) for help and facilities for time-resolved absorption spectroscopy. We also thank M.Sc. Alli Liukkonen (University of Jyväskylä) and Dr. Heikki Häkkänen (University of Jyväskylä) for the assistance in laboratory …

Quantification of the depletion of ozone in the plume of Mount Etna

2015

Volcanoes are an important source of inorganic halogen species into the atmosphere. Chemical processing of these species generates oxidised, highly reactive, halogen species which catalyse considerable O3 destruction within volcanic plumes. A campaign of ground-based in situ O3, SO2 and meteorology measurements was undertaken at the summit of Mount Etna volcano in July/August 2012. At the same time, spectroscopic measurements were made of BrO and SO2 columns in the plume downwind. Depletions of ozone were seen at all in-plume measurement locations, with average O3 depletions ranging from 11–35 nmol mol−1 (15–45%). Atmospheric processing times of the plume were estimated to be between 1 and …

Plume composition and volatile flux of Nyamulagira volcano, Democratic Republic of Congo, during birth and evolution of the lava lake, 2014-2015

2017

Very little is known about the volatile element makeup of the gaseous emissions of Nyamulagira volcano. This paper tries to fill this gap by reporting the first gas composition measurements of Nyamulagira’s volcanic plume since the onset of its lava lake activity at the end of 2014. Two field surveys were carried out on 1 November 2014, and 13–15 October 2015. We applied a broad toolbox of volcanic gas composition measurement techniques in order to geochemically characterize Nyamulagira’s plume. Nyamulagira is a significant emitter of SO2, and our measurements confirm this, as we recorded SO2 emissions of up to ~ 14 kt/d during the studied period. In contrast to neighbouring Nyiragongo volc…

2018

Volcanoes are a significant halogen source to the atmosphere. After water, carbon dioxide and sulfur compounds, halogens are often the most abundant gases in volcanic plumes. In the past, less attention was given to the heavy halogens bromine and iodine. However, the discovery of bromine monoxide (BrO) in volcanic plumes led to new interest especially in volcanic bromine chemistry and its impact on atmospheric processes. The BrO detection came along with advances in volcanic remote sensing techniques, in particular, robust DOAS applications and the possibility of continuous measurements by automated instruments located at safe distances from the volcano. As one of the consequences, the volc…

Emission of bromine and iodine from Mount Etna volcano

2005

[1] Constraining fluxes of volcanic bromine and iodine to the atmosphere is important given the significant role these species play in ozone depletion. However, very few such measurements have been made hitherto, such that global volcanic fluxes are poorly constrained. Here we extend the data set of volcanic Br and I degassing by reporting the first measurements of bromine and iodine emissions from Mount Etna. These data were obtained using filter packs and contemporaneous ultraviolet spectroscopic SO2 flux measurements, resulting in time-averaged emission rates of 0.7 kt yr−1 and 0.01 kt yr−1 for Br and I, respectively, from April to October 2004, from which we estimate global Br and I flu…

BrO formation in volcanic plumes

2006

Volcanoes have only recently been recognized as a potentially major source of reactive bromine species to the atmosphere, following from the detection of bromine monoxide (BrO) in the plume emitted by Soufriere Hills Volcano, Montserrat. However, BrO is not expected to be emitted in significant quantity from magma, presenting a puzzle regarding its formation. We report here new field measurements of the tropospheric plume emitted by Mt. Etna, Italy, which provide the first direct evidence of fast oxidation of halogen species in a volcanic plume, and lead to an explanation of how BrO is generated from magmatic HBr emissions. We show that the timescale of BrO formation (a few minutes after em…

The olivine macrocryst problem: New insights from minor and trace element compositions of olivine from Lac de Gras kimberlites, Canada

2015

This study presents detailed petrographical and geochemical investigations on remarkably fresh olivines in kimberlites from the EKATI Diamond Mine™ located in the Tertiary/Cretaceous Lac de Gras kimberlite field within the Slave craton of Canada. Olivine, constituting about 42 vol.% of the analyzed samples, can be divided into two textural groups: (i) macrocrystic olivines, > 100 μm sub-rounded crystals and (ii) groundmass olivines, < 100 μm subhedral crystals. Olivines from both populations define two distinct chemical trends; a “mantle trend” with angular cores, showing low Ca (< 0.1 wt.% CaO) and high Ni (0.3–0.4 wt.% NiO) at varying Mg# (0.86–0.93), contrasts with a “melt trend” typifie…

Tidal currents in the Malta - Sicily Channel from high-frequency radar observations

2015

Two years of sea surface current measurements acquired since August 2012 by High-Frequency SeaSonde radars over the relatively shallow shelf area dividing the Maltese Islands from Sicily (the Malta - Sicily Channel), are used to characterize the surface tidal currents in the region. Tidal currents are generally weak and concentrated in the semidiurnal and diurnal bands, barely exceeding 3cms-1 in the semidiurnal band (M2, S2), and below 6cms-1 in the diurnal band (K1, O1). In the middle part of the basin, the M2 currents oscillate along the main Channel axis; on the contrary the S2 oscillations are oriented along the energetic Atlantic Ionian Stream (AIS) flow. Diurnal tides have a more cir…