Search results for "serine"
showing 10 items of 590 documents
Controlled cleavage of KLH1 and KLH2 by the V8 protease from Staphylococcus aureus reassociation, electrophoretic and transmission electron microscop…
1999
The reassociation behaviour of protease V8-cleaved peptides from KLH1 and KLH2, the two hemocyanin isoforms from the giant keyhole limpet Megathura crenulata, has been studied by transmission electron microscopy of negatively stained specimens and SDS/PAGE. Reassociation of the complete mixture of protease cleavage products and of combinations of peptide fragments purified by HPLC was performed in the presence of 100 mm CaCl2 and 100 mm MgCl2 at pH 7.4, over a period of 1 to 4 weeks. The V8 protease splits KLH1 into peptide fragments containing the functional units abc, def, defg, defgh, g and h. This mixture of peptide fragments reassociated to form helical tubular polymers, with a diamete…
Enzyme molecular mechanism as a starting point to design new inhibitors: a theoretical study of O-GlcNAcase.
2011
O-Glycoprotein 2-acetamino-2-deoxy-β-d-glucopyranosidase (O-GlcNAcase) hydrolyzes O-linked 2-acetamido-2-deoxy-β-d-glucopyranoside (O-GlcNAc) residues from post-translationally modified serine/threonine residues of nucleocytoplasmic protein. The chemical process involves substrate-assisted catalysis, where two aspartate residues have been identified as the two key catalytic residues of O-GlcNAcase. In this report, the first step of the catalytic mechanism used by O-GlcNAcase involving substrate-assisted catalysis has been studied using a hybrid quantum mechanical/molecular mechanical (QM/MM) Molecular Dynamics (MD) calculations. The free energy profile shows that the formation of the oxazol…
Diastereoselective formation of highly functionalised α-substituted amino acid derivatives via aldol addition
2005
Abstract Highly diastereoselective aldol additions of (2 R ,4 S )-3- tert -butyl 4-methyl 2- tert -butyloxazolidine-3,4-dicarboxylate ( 1 ) are reported. The utility of the highly substituted oxazolidines of type 1 for diastereoselective α-addition of the fully protected amino acid l -serine with achiral and chiral carbonyl compounds is demonstrated and the relative and absolute configuration of the aldol products are discussed on the basis of NOESY data and solid state structures of selected examples. The aldol products represent highly useful intermediates in the syntheses of sphingosine-related metabolites.
Serine/Threonine Phosphatase Inhibitors Decrease Adrenergic Arylalkylamine N -Acetyltransferase Induction in the Rat Pineal Gland
2001
Adrenergic regulation of the pineal enzyme serotonin N-acetyltransferase [arylalkylamine N-acetyltransferase (AA-NAT); EC 2.3.1.87] accounts for the circadian rhythm in melatonin formation. In the present study, the role of protein phosphatases in the adrenergic regulation of rat pineal AA-NAT was investigated using specific inhibitors. In cultured pineals, the serine/threonine phosphatase type 1 and type 2A inhibitors okadaic acid and calyculin A significantly decreased adrenergically or cAMP-induced AA-NAT activity, whereas the serine/threonine phosphatase type 2B inhibitor cypermethrin and tyrosine phosphatase inhibitor dephostatin were ineffective. Reverse transcriptase-polymerase chain…
Stereocontrolledα-Alkylation of Fully ProtectedL-Serine
2004
Diastereoselective alkylation of the (2S,4S) and (2R,4S) diastereomers of 3-tert-butyl 4-methyl 2-tert-butyl-1,3-oxazolidine-3,4-dicarboxylate (1a/b) is reported. Formation of both diastereomers of these oxazolidines was achieved by changing the order of protection steps, and their relative and absolute configurations were determined by NOESY spectroscopy. The use of the bulky ring substituent tBu together with Boc as the N-protecting group led to the exclusive formation of only one alkylated diastereomer. (© Wiley-VCH Verlag GmbH & Co. KGaA, 69451 Weinheim, Germany, 2004)
Phosphorylation of mismatch repair proteins MSH2 and MSH6 affecting MutSα mismatch-binding activity
2002
Mismatch repair (MMR) is involved in the removal of mispaired bases from DNA and thus plays an important role in the maintenance of genomic stability and the prevention of mutations and cancer. Moreover, MMR triggers genotoxicity and apoptosis upon processing of DNA lesions such as O6-methylguanine. Whereas the enzymology of MMR has been elucidated in great detail, only limited data are available concerning its regulation. Here we show that the major mismatch-binding proteins MSH2 and MSH6, forming the MutSalpha complex, are phosphorylated in vitro by protein kinase C and casein kinase II, but not by protein kinase A. Phosphorylation of MSH2 and MSH6 was also found within the cell, with MSH…
In vivo discovery of a peptide that prevents CUG-RNA hairpin formation and reverses RNA toxicity in myotonic dystrophy models
2011
6 pages, 5 figures. PMID:21730182[PubMed] PMCID: PMC3141925[Available on 2012/1/19]
Co‐occurrence patterns in a steppe bird community: insights into the role of dominance and competition
2023
Spatial co-occurrence patterns are determined by environmental factors, such as food availability or habitat characteristics and by biotic associations. When resources are limited, competition which implies a dominant hierarchy can shape species assemblage. Here, we study space and time co-occurrence of steppe passerines during the breeding season in a natural steppe habitat, its modulation by environmental filtering, potential biotic interactions and random processes. We applied the joint species distribution model of hierarchical modelling of species community (HMSC) to data on species presence–absence and environmental, temporal and spatial covariates acquired from seven plots in a natur…
Ecomorphological predictors of natal dispersal distances in birds.
2008
1. Dispersal is one of the key ecological parameters but it is very difficult to quantify directly. As a consequence, empirical studies often ignore dispersal or use indirect measures. 2. Ringing data have previously been used to estimate the natal dispersal distances of 47 British passerine bird species. This provides an excellent opportunity to examine the potential of various indirect measures to predict natal dispersal distances in British birds. 3. We use a phylogenetic comparative framework and single- and multipredictor models including ecomorphological, behavioural or ecological traits to predict natal dispersal distance. 4. A multipredictor model that includes Kipp's distance (a me…
Population trends of birds across the iron curtain: Brain matters
2011
One approach to assess human impact on species’ population dynamics is to correlate ecological traits of species with their long-term population trends. Yet, few studies investigated population trends in multiple regions that differ in human impact to reveal which traits explain population trends over larger geographic areas and which only regionally. We examined the relationship between various species traits and long-term population trends of 57 common passerine bird species from 1991 to 2007 in three adjacent regions in central Europe that experienced differences in socioeconomic history: North-Western Germany, Eastern Germany and the Czech Republic. We tested effects of habitat, dietary…