Search results for "soft"

showing 10 items of 9809 documents

MuLiMs-MCoMPAs: A Novel Multiplatform Framework to Compute Tensor Algebra-Based Three-Dimensional Protein Descriptors

2019

This report introduces the MuLiMs-MCoMPAs software (acronym for Multi-Linear Maps based on N-Metric and Contact Matrices of 3D Protein and Amino-acid weightings), designed to compute tensor-based 3D protein structural descriptors by applying two- and three-linear algebraic forms. Moreover, these descriptors contemplate generalizing components such as novel 3D protein structural representations, (dis)similarity metrics, and multimetrics to extract geometrical related information between two and three amino acids, weighting schemes based on amino acid properties, matrix normalization procedures that consider simple-stochastic and mutual probability transformations, topological and geometrical…

Theoretical computer science010304 chemical physicsbusiness.industryGeneral Chemical EngineeringComputationGeneral ChemistryTensor algebraLibrary and Information Sciences01 natural sciences0104 chemical sciencesComputer Science ApplicationsWeighting010404 medicinal & biomolecular chemistryMatrix (mathematics)Software0103 physical sciencesPrincipal component analysisData pre-processingUser interfacebusinessJournal of Chemical Information and Modeling
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On the impact of forgetting on learning machines

1995

People tend not to have perfect memories when it comes to learning, or to anything else for that matter. Most formal studies of learning, however, assume a perfect memory. Some approaches have restricted the number of items that could be retained. We introduce a complexity theoretic accounting of memory utilization by learning machines. In our new model, memory is measured in bits as a function of the size of the input. There is a hierarchy of learnability based on increasing memory allotment. The lower bound results are proved using an unusual combination of pumping and mutual recursion theorem arguments. For technical reasons, it was necessary to consider two types of memory : long and sh…

Theoretical computer scienceActive learning (machine learning)Computer scienceSemi-supervised learningMutual recursionArtificial IntelligenceInstance-based learningHierarchyForgettingKolmogorov complexitybusiness.industryLearnabilityAlgorithmic learning theoryOnline machine learningInductive reasoningPumping lemma for regular languagesTerm (time)Computational learning theoryHardware and ArchitectureControl and Systems EngineeringArtificial intelligenceSequence learningbusinessSoftwareCognitive psychologyInformation SystemsJournal of the ACM
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Underlying Simple Graphs

2019

Summary In this article the notion of the underlying simple graph of a graph (as defined in [8]) is formalized in the Mizar system [5], along with some convenient variants. The property of a graph to be without decorators (as introduced in [7]) is formalized as well to serve as the base of graph enumerations in the future.

Theoretical computer scienceApplied Mathematics020207 software engineering0102 computer and information sciences02 engineering and technology68t9901 natural sciencesComputational Mathematics03b35010201 computation theory & mathematicsSimple (abstract algebra)underlying simple graphQA1-9390202 electrical engineering electronic engineering information engineering05c76Graph operationsgraph operationsMathematicsMathematicsofComputing_DISCRETEMATHEMATICSMathematicsFormalized Mathematics
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A solution to the stochastic point location problem in metalevel nonstationary environments.

2008

This paper reports the first known solution to the stochastic point location (SPL) problem when the environment is nonstationary. The SPL problem involves a general learning problem in which the learning mechanism (which could be a robot, a learning automaton, or, in general, an algorithm) attempts to learn a "parameter," for example, lambda*, within a closed interval. However, unlike the earlier reported results, we consider the scenario when the learning is to be done in a nonstationary setting. For each guess, the environment essentially informs the mechanism, possibly erroneously (i.e., with probability p), which way it should move to reach the unknown point. Unlike the results availabl…

Theoretical computer scienceAutomatic controlDiscretizationComputer scienceInformation Storage and RetrievalDecision Support TechniquesPattern Recognition AutomatedArtificial IntelligenceComputer SimulationElectrical and Electronic EngineeringStochastic ProcessesModels StatisticalLearning automatabusiness.industryStochastic processSignal Processing Computer-AssistedGeneral MedicineRandom walkComputer Science ApplicationsAutomatonHuman-Computer InteractionControl and Systems EngineeringPoint locationArtificial intelligencebusinessSoftwareAlgorithmsInformation SystemsIEEE transactions on systems, man, and cybernetics. Part B, Cybernetics : a publication of the IEEE Systems, Man, and Cybernetics Society
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Boosting Textual Compression in Optimal Linear Time

2005

We provide a general boosting technique for Textual Data Compression. Qualitatively, it takes a good compression algorithm and turns it into an algorithm with a better compression performance guarantee. It displays the following remarkable properties: (a) it can turn any memoryless compressor into a compression algorithm that uses the “best possible” contexts; (b) it is very simple and optimal in terms of time; and (c) it admits a decompression algorithm again optimal in time. To the best of our knowledge, this is the first boosting technique displaying these properties.Technically, our boosting technique builds upon three main ingredients: the Burrows--Wheeler Transform, the Suffix Tree d…

Theoretical computer scienceBurrows–Wheeler transformSuffix treeString (computer science)Data_CODINGANDINFORMATIONTHEORYBurrows-Wheeler transformSubstringArithmetic codinglaw.inventionLempel-Ziv compressorsArtificial IntelligenceHardware and ArchitectureControl and Systems Engineeringlawtext compressionempirical entropyArithmetic codingGreedy algorithmTime complexityAlgorithmSoftwareInformation SystemsMathematicsData compression
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Movie Script Similarity Using Multilayer Network Portrait Divergence

2020

International audience; This paper addresses the question of movie similarity through multilayer graph similarity measures. Recent work has shown how to construct multilayer networks using movie scripts, and how they capture different aspects of the stories. Based on this modeling, we propose to rely on the multilayer structure and compute different similarities, so we may compare movies, not from their visual content, summary, or actors, but actually from their own storyboard. We propose to do so using “portrait divergence”, which has been recently introduced to compute graph distances from summarizing graph characteristics. We illustrate our approach on the series of six Star Wars movies.

Theoretical computer scienceComputer science02 engineering and technologyStar (graph theory)[INFO.INFO-NE]Computer Science [cs]/Neural and Evolutionary Computing [cs.NE]computer.software_genre01 natural sciences010305 fluids & plasmas[INFO.INFO-AI]Computer Science [cs]/Artificial Intelligence [cs.AI]Similarity (network science)[INFO.INFO-LG]Computer Science [cs]/Machine Learning [cs.LG]0103 physical sciences0202 electrical engineering electronic engineering information engineering[INFO]Computer Science [cs]StoryboardDivergence (statistics)Structure (mathematical logic)Network portraitMoviesMultilayer networksNetwork similarity[INFO.INFO-MM]Computer Science [cs]/Multimedia [cs.MM]Construct (python library)Scripting languageGraph (abstract data type)020201 artificial intelligence & image processingcomputer[SPI.SIGNAL]Engineering Sciences [physics]/Signal and Image processing
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Verification of linear hybrid systems with large discrete state spaces using counterexample-guided abstraction refinement

2017

Abstract We present a counterexample-guided abstraction refinement ( CEGAR) approach for the verification of safety properties of linear hybrid automata with large discrete state spaces, such as naturally arising when incorporating health state monitoring and degradation levels into the controller design. Such models can – in contrast to purely functional controller models – not be analyzed with hybrid verification engines relying on explicit representations of modes, but require fully symbolic representations for both the continuous and discrete part of the state space. The presented abstraction methods directly work on a symbolic representation of arbitrary non-convex combinations of line…

Theoretical computer scienceComputer science020207 software engineering02 engineering and technologyAutomatonHybrid system0202 electrical engineering electronic engineering information engineeringState space020201 artificial intelligence & image processingState (computer science)Representation (mathematics)Boolean data typeSoftwareInterpolationCounterexampleScience of Computer Programming
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OpenCMISS: A multi-physics & multi-scale computational infrastructure for the VPH/Physiome project

2011

The VPH/Physiome Project is developing the model encoding standards CellML (cellml.org) and FieldML (fieldml.org) as well as web-accessible model repositories based on these standards (models.physiome.org). Freely available open source computational modelling software is also being developed to solve the partial differential equations described by the models and to visualise results. The OpenCMISS code (opencmiss.org), described here, has been developed by the authors over the last six years to replace the CMISS code that has supported a number of organ system Physiome projects. OpenCMISS is designed to encompass multiple sets of physical equations and to link subcellular and tissue-level b…

Theoretical computer scienceComputer science0206 medical engineeringBiophysics02 engineering and technologyModels BiologicalBiophysical PhenomenaDomain (software engineering)Computational science03 medical and health sciencesSoftwareEncoding (memory)HumansComputer SimulationMolecular BiologyPhysiological Phenomena030304 developmental biology0303 health sciencesbusiness.industryCellMLData structure020601 biomedical engineeringElasticityFinite element methodElectrophysiological PhenomenaPhysiomeFlow (mathematics)businessSoftwareProgress in Biophysics and Molecular Biology
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Modelling and simulation of several interacting cellular automata

2015

Cellular automata are used for modelling and simulation of many systems. In some applications, the system is formed by a set of subsystems that can be modelled separately, but, in such cases, the existence of interactions between these subsystems requires additional modelling and computer programming. In this paper we propose a modelling methodology for the simulation of a set of cellular automata models that interact with each other. The modelling methodology is described, together with an insight on implementation details. Also, it is applied to a particular cellular automata model, the Sanpile model, to illustrate its use and to obtain some example simulations.

Theoretical computer scienceComputer scienceAbelian sandpile modelbusiness.industryComputer programmingGeneral EngineeringVirtual realityDynamic modellingNonlinear Sciences::Cellular Automata and Lattice GasesCellular automatonComputer Science ApplicationsSet (abstract data type)Stochastic cellular automatonSimulació per ordinadorbusinessRobotsSoftware
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On parsing optimality for dictionary-based text compression—the Zip case

2013

Dictionary-based compression schemes are the most commonly used data compression schemes since they appeared in the foundational paper of Ziv and Lempel in 1977, and generally referred to as LZ77. Their work is the base of Zip, gZip, 7-Zip and many other compression software utilities. Some of these compression schemes use variants of the greedy approach to parse the text into dictionary phrases; others have left the greedy approach to improve the compression ratio. Recently, two bit-optimal parsing algorithms have been presented filling the gap between theory and best practice. We present a survey on the parsing problem for dictionary-based text compression, identifying noticeable results …

Theoretical computer scienceComputer scienceData_CODINGANDINFORMATIONTHEORYTop-down parsingcomputer.software_genreTheoretical Computer ScienceParsing optimalityCompression (functional analysis)Discrete Mathematics and CombinatoricsLossless compressionParsingLZ77 algorithmSettore INF/01 - InformaticaDeflate algorithmbusiness.industryDictionary-based text compressionComputational Theory and MathematicsData compressionDEFLATECompression ratioArtificial intelligencebusinesscomputerNatural language processingBottom-up parsingData compressionJournal of Discrete Algorithms
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