Search results for "solvent effect"

Experimental and theoretical studies on the electronic spectra of indole-3-acetic acid and its anionic and protonated species

1991

Abstract The geometrical and electronic structure of indole-3-acetic acid (IAH) have been investigated using the MINDO/3 molecular orbital method, the geometries being optimized by Rinaldi's method. The UV spectrum of IAH has been recorded in different solvents. The corresponding spectra of IAH + 2 and IA − were also respectively obtained, from IAH in different H 2 SO 4 /water mixtures and NaOH solutions. The agreement of experimental spectra with the ones theoretically calculated by the CNDO/M-Cl method after optimization of the κ parameter, is discussed. The p K a values of IAH have also been determined from the IAH + 2 spectra and are compared with literature data.

DNA nucleobase properties and photoreactivity: Modeling environmental effects

2009

Abstract The accurate ab initio quantum chemical (QM) method multiconfigurational second-order perturbation (CASSPT2)/complete active space self-consistent field (CASSCF) has been used in conjunction with molecular mechanics (MM) procedures to compute molecular properties and photoinduced reactivity of DNA/RNA nucleobases (NABs) in isolation and within a realistic environment, in which the double helix strand, the aqueous media, and the external counterions are included. It is illustrated that the use of an MM model is helpful both to account for short- and long-range effects of the system surrounding the QM molecular core and to provide the proper structural constraints that allow more acc…

Supramolecular chirality in organogels: a detailed spectroscopic, morphological, and rheological investigation of gels (and xerogels) derived from al…

2010

This Article addresses the formation of chiral supramolecular structures in the organogels derived from chiral organogelator 1R (or 2R), and its mixtures with its enantiomer (1S) and achiral analogue 3 by extensive circular dichroism (CD) spectroscopic measurements. Morphological analysis by atomic force microscopy (AFM) and scanning electron microscopy (SEM) were complemented by the measurements of their bulk properties by thermal stability and rheological studies. Specific molecular recognition events (1/3 vs 2/3) and solvent effects (isooctane vs dodecane) were found to be critical in the formation of chiral aggregates. Theoretical studies were also carried out to understand the interact…

Twisting of the resorcinarene core due to solvent effects upon crystallization

2009

The effect of the crystallization conditions on the conformation of the tetramethoxy resorcinarene skeleton was investigated in acetone solutions, to which was added a second component (less favorable solvent or salt) to promote crystallization. The resorcinarene core was found to adopt three different conformations: crown (I), a pinched crown (II) and a twisted pinched crown (III). In addition, the flexibility of the resorcinarene core was compared with a tetramethoxy resorcinarene derivative, resorcinarene bis-crown, which is in a fixed boat conformation.

A DFT study of the role of the Lewis acid catalysts in the [3 + 2] cycloaddition reaction of the electrophilic nitrone isomer of methyl glyoxylate ox…

2015

The molecular mechanism and stereoselectivity of the BF3 Lewis acid catalyzed [3 + 2] cycloaddition (32CA) reaction between C-methoxycarbonyl nitrone and cyclopentene has been theoretically studied using DFT methods at the MPWB1K/6-31G(d) computational level. The BF3 catalyst accelerates the 32CA reaction by decreasing the activation energy leading to the formation of the trans cycloadduct as the kinetic product, in agreement with the experimental data. Inclusion of solvent effects slightly increases the activation energy and decreases the exothermic character of the 32CA reaction as a consequence of a better solvation of nitrone than the transition state and the cycloadduct. The use of the…

Density functional theory study of the mechanism of the proline-catalyzed intermolecular aldol reaction

2002

Transition structures associated with the C-C bond-formation step of the proline-catalyzed intermolecular aldol reaction between acetone and isobutyraldehyde have been studies using density functional theory methods at the B3LYP/6-31G** computational level. A continuum model has been selected to represent solvent effects. For this step, which is the stereocontrolling and rate-determining step, four reactive channels corresponding to the syn and anti arrangement of the active methylene of the enamine relative to the carboxylic acid group of l-proline and the re and si attack modes to both faces of the aldehyde carbonyl group have been analyzed. The B3LYP/6-31G** energies are in good agreemen…

Collapse of Linear Polyelectrolyte Chains in a Poor Solvent: When Does a Collapsing Polyelectrolyte Collect its Counterions?

2008

To better understand the collapse of polyions in poor solvent conditions the effective charge and the solvent quality of the hypothetically uncharged polymer backbone need to be known. In the present work this is achieved by utilizing poly-2-vinylpyridine quaternized to 4.3% with ethylbromide. Conductivity and light scattering measurements were utilized to study the polyion collapse in isorefractive solvent/nonsolvent mixtures consisting of 1-propanol and 2-pentanone, respectively, at nearly constant dielectric constant. The solvent quality of the uncharged polyion could be quantified which, for the first time, allowed the experimental investigation of the effect of the electrostatic intera…

Non-classical CH⋯O hydrogen-bond determining the regio- and stereoselectivity in the [3 + 2] cycloaddition reaction of (Z)-C-phenyl-N-methylnitrone w…

2015

The role of the ester groups in the regio- and stereoselectivities of the zw-type [3 + 2] cycloaddition (32CA) reaction of C-phenyl-N-methylnitrone with dimethyl 2-benzylidenecyclopropane-1,1-dicarboxylate (BCPC) has been studied using DFT methods at the MPWB1K/6-31G(d) level. The possible ortho/meta regioisomeric channels and the endo/exo stereoselective approach modes were explored and characterized. Analysis of the relative energies associated with the different reaction pathways indicates that the presence of the two CO2Me groups in the cyclopropane ring has a remarkable effect on selectivities favouring the ortho/endo path, in good agreement with the experimental data. Inclusion of sol…

1988

The unperturbed dimensions parameter KΘ is one of the most important characteristics of a polymer chain. For binary systems (polymer/solvent) and mostly for ternary systems (polymer/solvent(1)/solvent(2)) the KΘ values show large discrepancies with respect to those under thetaconditions in a single solvent. These discrepancies can be explained by considering that the interaction parameter χ (and consequently the coil dimensions or the number of intramolecular contacts between polymer segments) changes with molecular weight M. Assuming this dependency, a modified Stockmayer-Fixman equation is proposed from which a unique value of KΘ for a given polymer, independent of M, is obtained. The use…

Conformational properties of oxazoline-amino acids

2016

Abstract Oxazoline-amino acids (Xaa-Ozn) occur in natural peptides of potentially important bioactivity. The conformations of the model compounds: Ac-(S)-Ala-Ozn(4R-Me), Ac-(S)-Ala-Ozn(4S–Me), and (gauche+, gauche−, anti) Ac-(S)-Val-Ozn(4R-Me) were studied at meta-hybrid M06-2X/6–311++G(d,p) method including solvent effect. Boc- l -Ala- l -Ozn-4-COOMe and Boc- l -Val- l -Ozn-4-COOMe were synthesized and studied by FT-IR and NMR-NOE methods. The conformations in crystal state were gathered from the Cambridge Structural Data Base. The main conformational feature of the oxazoline amino acids is the conformation β2 (ϕ,ψ ∼ −161°, −6°), which predominates in weakly polar environment and still is …