Search results for "sponge"

showing 10 items of 296 documents

16S rRNA sequences as diagnostic tools to elucidate potential symbiotic relationships between bacteria and the marine sponge Halichondria panicea : r…

1999

GeneticsEcologybiologyEcologyRhodobacter veldkampiiAquatic ScienceDiagnostic toolsbiology.organism_classification16S ribosomal RNAHalichondria paniceaSpongeSymbiosisNorth seaEcology Evolution Behavior and SystematicsBacteriaMarine Biology
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Immunological and biological identification of tumour necrosis-like factor in sponges: Endotoxin that mediates necrosis formation in xenografts

1992

Xenografts of the sponge Geodia cydonium in its closely related species G. rovinjensis resulted in a rapid rejection of the graft within a period of 5 days. We identified an immunoreactive tumour necrosis factor (TNF)-like activity in the xenograft (Mr of 30,000) two days after grafting. In-vivo injection of 5 micrograms human recombinant TNF-alpha induced cytotoxicity in sponge cells in the same pattern and time course as during natural xenograft rejection. Anti-TNF-alpha polyclonals were found to react with xenograft extracts, by Western blot analysis, as from day 2 after grafting. Using ELISA we detected the TNF-like activity from day 2 after grafting with peak levels at days 4 and 5, wh…

Interferon InducersNecrosisTransplantation HeterologousImmunologyEnzyme-Linked Immunosorbent AssayBiochemistryInjectionslaw.inventionNecrosisWestern blotlawmedicineAnimalsImmunology and AllergyCytotoxicityReceptorMolecular BiologyGlycoproteinsCell Deathbiologymedicine.diagnostic_testTumor Necrosis Factor-alphaLectinHematologybiology.organism_classificationMolecular biologyExtracellular MatrixPoriferaEndotoxinsMolecular WeightSpongeImmunologybiology.proteinRecombinant DNATumor necrosis factor alphamedicine.symptomCytokine
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A cryptochrome-based photosensory system in the siliceous sponge Suberites domuncula (Demospongiae)

2010

Based on the light-reactive behavior of siliceous sponges, their intriguing quartz glass-based spicular system and the existence of a light-generating luciferase [Muller WEG et al. (2009) Cell Mol Life Sci 66, 537–552], a protein potentially involved in light reception has been identified, cloned and recombinantly expressed from the demosponge Suberites domuncula. Its sequence displays two domains characteristic of cryptochrome, the N-terminal photolyase-related region and the C-terminal FAD-binding domain. The expression level of S. domuncula cryptochrome depends on animal’s exposure to light and is highest in tissue regions rich in siliceous spicules; in the dark, no cryptochrome transcri…

Siliceous spongebiologyA proteinCell BiologyAnatomybiology.organism_classificationBiochemistryCell biologySuberites domunculaDemospongeSponge spiculeLight sourceCryptochromeLuciferaseMolecular BiologyFEBS Journal
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Isolation and characterization of two T-box genes from sponges, the phylogenetically oldest metazoan taxon

2003

It is now well established that all metazoan phyla derived from one common ancestor, the hypothetical Urmetazoa. Due to the basal position of Porifera (Demospongiae) in the phylogenetic tree of Metazoa, studies on the mechanisms controlling the development of these animals can provide clues on the understanding of the origin of multicellular animals and on how the first organization of the body plan evolved. In this report we describe the isolation and genomic characterization of two T-box genes from the siliceous sponge Suberites domuncula. The phylogenetic analysis classifies one into the subfamily of Brachyury, Sd-Bra, and the second into the Tbx2 subfamily, Sd-Tbx2. Analyses of the Sd-B…

Siliceous spongeBrachyuryDNA ComplementarySubfamilyMolecular Sequence DataMolecular evolutionPhylogeneticsGeneticsAnimalsProtein IsoformsElectrophoresis Gel Two-DimensionalAmino Acid SequencePhylogenyBase SequencebiologyPhylogenetic treeSequence Analysis DNAAnatomybiology.organism_classificationPoriferaSuberites domunculaAlternative SplicingBody planEvolutionary biologyT-Box Domain ProteinsProtein Processing Post-TranslationalDevelopmental BiologyDevelopment Genes and Evolution
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Magnetic resonance imaging of the siliceous skeleton of the demosponge Lubomirskia baicalensis

2005

The skeletal elements (spicules) of the demosponge Lubomirskia baicalensis were analyzed; they are composed of amorphous, non-crystalline silica, and contain in a central axial canal the axial filament which consists of the enzyme silicatein. The axial filament, that orients the spicule in its longitudinal axis exists also in the center of the spines which decorate the spicule. During growth of the sponge, new serially arranged modules which are formed from longitudinally arranged spicule bundles are added at the tip of the branches. X-ray analysis revealed that these serial modules are separated from each other by septate zones (annuli). We describe that the longitudinal bundles of spicule…

SpiculebiologyAnatomyLubomirskia baicalensisbiology.organism_classificationSilicon DioxideSkeleton (computer programming)Magnetic Resonance ImagingModels BiologicalPoriferaRadiographySpongeDemospongeSponge spiculeNuclear magnetic resonanceApex (mollusc)Structural BiologyMicroscopy Electron ScanningAnimalsLongitudinal axisBody PatterningJournal of Structural Biology
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In vivo exposure of the marine sponge Chondrilla nucula Schmidt, 1862 to cadmium (Cd), copper (Cu) and lead (Pb) and its potential use for bioremedia…

2018

Abstract The study aimed to test the cadmium (Cd), copper (Cu) and lead (Pb) bioaccumulation capacity of the marine sponge Chondrilla nucula and to measure the expression of metallothioneins (MTs) by a western blotting assay to explore metal tolerance and its potential use as a bioremediator in contaminated coastal areas. C. nucula was sampled in a protected marine area in order to perform experiments on organisms living in a healthy environment. Under laboratory conditions, the sponges were exposed to increasing concentrations of Cd, Cu and Pb in tanks filled with artificial seawater set up for the experiments. For each metal, three waterborne concentrations (mgL−1) of Cd (0.02–0.04-0.08),…

Settore BIO/07 - Ecologia0301 basic medicineEnvironmental EngineeringHealth Toxicology and Mutagenesischemistry.chemical_elementArtificial seawater010501 environmental sciences01 natural sciences03 medical and health sciencesBioremediationSpongeEnvironmental ChemistryAnimalsChondrilla nucula0105 earth and related environmental sciencesCadmiumbiologyAnimalPublic Health Environmental and Occupational HealthEnvironmental engineeringGeneral MedicineGeneral ChemistryContaminationbiology.organism_classificationChondrilla nuculaPollutionCopperPoriferaSpongeHeavy metal030104 developmental biologyBiodegradation EnvironmentalHeavy metalschemistryLeadSpongesEnvironmental chemistryBioaccumulationBiodegradationBioremediation Chondrilla nucula Heavy metals SpongesBioremediationCopperCadmiumChemosphere
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2017

The 6-epimer of the plakortide H acid (1), along with the endoperoxides plakortide E (2), plakortin (3), and dihydroplakortin (4) have been isolated from a sample of the Caribbean sponge Plakortis halichondrioides. To perform a comparative study on the cytotoxicity towards the drug-sensitive leukemia CCRF-CEM cell line and its multi-drug resistant subline CEM/ADR5000, the acid of plakortin, namely plakortic acid (5), as well as the esters plakortide E methyl ester (6) and 6-epi-plakortide H (7) were synthesized by hydrolysis and Steglich esterification, respectively. The data obtained showed that the acids (1, 2, 5) exhibited potent cytotoxicity towards both cell lines, whereas the esters s…

biology010405 organic chemistryStereochemistryPharmaceutical Sciencemedicine.diseasebiology.organism_classification01 natural sciences0104 chemical sciencesMultiple drug resistance03 medical and health sciencesLeukemiaHydrolysisSponge0302 clinical medicineCell culture030220 oncology & carcinogenesisDrug DiscoverymedicineSteglich esterificationCytotoxicityPharmacology Toxicology and Pharmaceutics (miscellaneous)IC50Marine Drugs
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Cloning of Hsp70 genes from the marine sponges Sycon raphanus (Calcarea) and Rhabdocalyptus dawsoni (Hexactinellida). An approach to solve the phylog…

1997

The phylogenetic relationships among the three classes of the Porifera—Demospongiae, Calcarea and Hexactinellida—are still unresolved, despite the use of molecular analyses of rRNA. To determine whether phylogenetic resolution of these classes is possible based on genes coding for specific proteins, in the present study the genes for the 70 kDa heat shock protein [Hsp70] were isolated fromRhabdocalyptus dawsoni[Hexactinellida] and fromSycon raphanus[Calcarea], and compared to that previously isolated from the demospongeGeodia cydonium. The gene fromR. dawsoniis 2021 bp long and encodes a predicted Hsp70 of Mr77,697; the protein comprises the characteristic sites of eukaryotic, cytoplasmic H…

GeneticsSpongePhylogenetic treePhylogeneticsComplementary DNAMolecular phylogeneticsSycon raphanusBiologyRibosomal RNAbiology.organism_classificationGeneEcology Evolution Behavior and SystematicsBiological Journal of the Linnean Society
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Confinement inside a Crystalline Sponge Induces Pyrrole To Form N−H⋅⋅⋅π Bonded Tetramers

2021

Based on the DFT‐level calculated molecular volume (V mol ) of pyrrole and its liquid density, pyrrole manifests the highest liquid density coefficient LD c (defined as [V mol • density • 0.6023]/FW) value of 0.7. Normal liquids have LD c < 0.63. This very high LD c is due to the strong N‐H … π interactions in solution and hence pyrrole can be considered to be a pseudo‐crystalline liquid. When trapped inside the confined space of the crystalline sponge a reorientation of the N‐H … π interaction is observed leading to specific cyclic N‐H … π tetramers and N‐H … π dimers, verified by single crystal X‐ray crystallographic and computational methods. These tetramers are of the same size as four …

Models MolecularCrystallography X-Ray010402 general chemistry01 natural sciencesCatalysiskemialliset sidoksetchemistry.chemical_compoundTetramerpyrrole tetramersupramolekulaarinen kemiaconfinement effectcrystalline sponge methodhost-guest chemistryMoleculePyrrolesHost–guest chemistryConfined spacePyrroleamiinitbiology010405 organic chemistryChemistryOrganic ChemistryIntermolecular forceGeneral Chemistrypolymeriabiology.organism_classification0104 chemical sciencesSpongeCrystallographyZigzagröntgenkristallografiaaggregatioChemistry – A European Journal
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Cyclodextrin‐Calixarene Nanosponges as Potential Platforms for pH‐Dependent Delivery of Tetracycline

2019

Four mixed cyclodextrin-calixarene nanosponges were tested as possible Drug Delivery Systems, using Tetracycline antibiotic as a suitable model drug. The selected nanosponges featured a different composition ratio between the two host co-monomer components, and the possible presence of ionisable amine or carboxyl groups deriving from chemical post-modification. The pH-dependent absorption and release abilities of the materials were verified; in particular release kinetics showed the occurrence of a simple first-order profile. The antibacterial activity of nanosponge-tetracycline composites suitably prepared under sterile conditions was assayed towards both Gram-positive and Gram-negative ty…

chemistry.chemical_classificationNanospongesCyclodextrinTetracyclinePh dependentSettore CHIM/06 - Chimica OrganicaGeneral ChemistryTetracyclineSettore BIO/19 - Microbiologia GeneraleCombinatorial chemistrychemistryNanospongesCalixareneDrug deliveryCalixarenemedicineCyclodextrinmedicine.drugChemistrySelect
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