Search results for "taxonomic"
showing 10 items of 148 documents
Genome-based analyses reveal a synonymy among Halorubrum distributum Zvyagintseva and Tarasov 1989; Oren and Ventosa 1996, Halorubrum terrestre Vento…
2020
A comparative taxonomic study of Halorubrum distributum , Halorubrum terrestre , Halorubrum arcis and Halorubrum litoreum was carried out using different approaches, 16S rRNA gene sequence analysis, multilocus sequence analysis (MLSA), phylogenomic analysis based on the comparison of the core genome, orthologous average nucleotide identity (OrthoANI), Genome-to-Genome Distance Calculator (GGDC), synteny plots and polar lipid profile (PLP). The MLSA study, using the five concatenated housekeeping genes atpB, EF-2, glnA, ppsA and rpoB′, and the phylogenomic analysis based on 1347 core translated gene sequences obtained from their genomes showed that Halorubrum distributum JCM 9100T, Halorubru…
Formalized classification of ephemeral wetland vegetation (Isoëto-Nanojuncetea class) in Poland (Central Europe)
2021
Formalized classification of the class Isoëto-Nanojuncetea has not been performed in Poland. We used 69,562 relevés stored in Polish Vegetation Database. Based on the literature and expert knowledge we selected 63 diagnostic species for the Isoëto-Nanojuncetea class. Unequivocal classification was applied in this work according to Cocktail method. A set of formal definitions was established using a combination of logical operators of total cover of species in case of high-rank syntaxa while sociological species groups and cover of particular species were used for logical formulas describing class, alliances and associations. An Expert System was prepared and applied to classify the whole da…
Reviewing lymnaeid vectors of fascioliasis by ribosomal DNA sequence analyses.
2005
AbstractSnails of the family Lymnaeidae are of great parasitological importance due to the numerous helminth species they transmit, mainly trematodiases (such as fascioliasis) of considerable medical and veterinary impact. The present knowledge of the genetics and host–parasite relationships of this gastropod group is far from adequate. Fascioliasis is caused by two species, Fasciola hepatica and F. gigantica, which, as in the case of other trematodes, show a marked snail host specificity. Many lymnaeid species involved in fascioliasis transmission still show a confused systematic-taxonomic status. The need for tools to distinguish and characterize species and populations of lymnaeids is ev…
Comparison of different assembly and annotation tools on analysis of simulated viral metagenomic communities in the gut
2013
Abstract Background The main limitations in the analysis of viral metagenomes are perhaps the high genetic variability and the lack of information in extant databases. To address these issues, several bioinformatic tools have been specifically designed or adapted for metagenomics by improving read assembly and creating more sensitive methods for homology detection. This study compares the performance of different available assemblers and taxonomic annotation software using simulated viral-metagenomic data. Results We simulated two 454 viral metagenomes using genomes from NCBI's RefSeq database based on the list of actual viruses found in previously published metagenomes. Three different ass…
The genus Scaphiostomum Braun, 1901 (Trematoda: Brachylaimidae): A systematic review and description of Scaphiostomum palaearcticum n. sp.
1986
A systematic review of the genus Scaphiostomum Braun, 1901 (Trematoda: Brachylaimidae) is presented. Its diagnosis is emended and its position within the subfamily Brachylaiminae Joyeux & Foley, 1930 is established. The subfamily Scaphiostominae Yamaguti, 1958 is considered a synonym of the Brachy-laiminae. Scaphiostomum comprises the following species: S. illatabile Braun, 1901 (type species) from birds in South America, S. pancreaticum McIntosh, 1934 and S. microti (Kruidenier & Gallicchio, 1959) n. comb., both from rodents in North America, and S. palaearcticum n. sp. from rodents in the Balearic Islands (Spain). Scaphiostomum sp. of Lim, 1967 from rodents in Malaysia probably constitute…
The revision of Pinacoceras (Ammonoidea, Upper triassic) of the Gemmellaro Collection.
2010
Benchmarking plant diversity of Palaearctic grasslands and other open habitats
2021
© 2021 The Authors.
Fossil echinoid (Echinoidea, Echinodermata) diversity of the Early Cretaceous (Hauterivian) in the Paris Basin (France).
2013
11 pages; International audience; This dataset inventories occurrence records of fossil echinoid specimens collected in the Calcaires à Spatangues Formation (CSF) that crops out in the southeast of the Paris Basin (France), and is dated from the Acanthodiscus radiatus chronozone (ca. 132 Ma, early Hauterivian, Early Cretaceous). Fossil richness and abundance of the CSF has attracted the attention of palaeontologists since the middle of the nineteenth century. This dataset compiles occurrence data (referenced by locality names and geographic coordinates with decimal numbers) of fossil echinoids both collated from the literature published over a century and a half, and completed by data from …
The Largest Subunit of RNA Polymerase II as a New Marker Gene to Study Assemblages of Arbuscular Mycorrhizal Fungi in the Field
2014
Due to the potential of arbuscular mycorrhizal fungi (AMF, Glomeromycota) to improve plant growth and soil quality, the influence of agricultural practice on their diversity continues to be an important research question. Up to now studies of community diversity in AMF have exclusively been based on nuclear ribosomal gene regions, which in AMF show high intra-organism polymorphism, seriously complicating interpretation of these data. We designed specific PCR primers for 454 sequencing of a region of the largest subunit of RNA polymerase II gene, and established a new reference dataset comprising all major AMF lineages. This gene is known to be monomorphic within fungal isolates but shows an…
Biochemical taxonomic differentiation between Mullus barbatus and mullus surmuletus (Pisces, mullidae)
1991
Abstract 1. 1. The electrophoretic data from seven enzymatic systems, codifying for 20 loci, and the patterns of general proteins from some tissues of Mullus barbatus and Mullus surmuletus were examined. 2. 2. The value of the genetic distance index as per Nei is 0.068, this criterium showing a high similarity between the two species. 3. 3. Species-specific patterns were found for the SOD enzyme and general proteins of the muscle.