Search results for "techniques"

showing 10 items of 4426 documents

Peptides corresponding to helices 5 and 6 of Bax can independently form large lipid pores

2006

Proteins of the B-cell lymphoma protein 2 (Bcl2) family are key regulators of the apoptotic cascade, controlling the release of apoptotic factors from the mitochondrial intermembrane space. A helical hairpin found in the core of water-soluble folds of these proteins has been reported to be the pore- forming domain. Here we show that peptides including any of the two a-helix fragments of the hairpin of Bcl2 associated protein X (Bax) can independently induce release of large labelled dextrans from synthetic lipid vesicles. The permeability promoted by these peptides is influenced by intrinsic monolayer curvature and accompanied by fast transbilayer redis- tribution of lipids, supporting a to…

Mitochondrial intermembrane spaceLipid BilayersMolecular Sequence DataIn Vitro TechniquesBiologyBiochemistryPermeabilityProtein Structure SecondaryMiceMonolayerAnimalsAmino Acid SequenceMolecular Biologybcl-2-Associated X ProteinCircular DichroismProtein xProteïnes de membranaCell BiologyPeptide FragmentsMitochondriaCell biologyMembrane proteinApoptosisLiposomesLipid vesiclePèptids
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Astrocytes Protect Neurons from Aβ1-42 Peptide-Induced Neurotoxicity Increasing TFAM and PGC-1 and Decreasing PPAR-γ and SIRT-1

2015

One of the earliest neuropathological events in Alzheimer's disease is accumulation of astrocytes at sites of Aβ1-42 depositions. Our results indicate that Aβ1-42 toxic peptide increases lipid peroxidation, apoptosis and cell death in neurons but not in astrocytes in primary culture. Aβ1-42-induced deleterious neuronal effects are not present when neurons and astrocytes are mixed cultured. Stimulation of astrocytes with toxic Aβ1-42 peptide increased p-65 and decreased IκB resulting in inflammatory process. In astrocytes Aβ1-42 decreases protein expressions of sirtuin 1 (SIRT-1) and peroxisome proliferator-activated receptor γ (PPAR-γ) and over-expresses peroxisome proliferator-activated re…

MnSODProgrammed cell deathPPAR-γPeroxisome proliferator-activated receptorMitochondrionBiologyBioinformaticsmedicine.disease_causeAlzheimer's DiseaseNeurologiaPGC-1Sirtuin 1medicineAnimalsTFAMCells Culturedchemistry.chemical_classificationNeuronsAmyloid beta-PeptidesCell DeathSirtuin 1Caspase 3Superoxide DismutaseNeurotoxicityTranscription Factor RelAGeneral MedicineTFAMmedicine.diseasePeroxisome Proliferator-Activated Receptor Gamma Coactivator 1-alphaCoculture TechniquesPeptide FragmentsCell biologyMitochondriaPeroxidesRatsPPAR gammachemistryMitochondrial biogenesisNF-κB.Astrocytesbiology.proteinFisiologia humanaLipid PeroxidationOxidative stressResearch PaperTranscription FactorsInternational Journal of Medical Sciences
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Quelques réflexions sur la place de l’axe Saône-Rhône au sein des réseaux d’échanges de l’âge du Bronze. L’exemple des épées à poignée mét…

2018

International audience; Les nombreuses études typologiques portant sur les épées à poignée métallique de l’âge du Bronze ont montré que celles-ci faisaient l’objet d’échanges sur de longues distances, comme en témoigne la diffusion de certaines formes d’un bout à l’autre de l’Europe. L’axe Saône-Rhône devait constituer un axe de passage privilégié pour ces échanges, permettant de faire la jonction entre le monde méditerranéen et les lacs Suisse, avec la vallée du Rhin via le Doubs ou encore avec le monde atlantique via la Loire, l’Yonne et la Seine. Cette situation au carrefour de différentes aires culturelles devait ainsi favoriser les contacts entre groupes à travers l’échange de biens ma…

MobilitéÉpéesÂge du Bronze[SHS.ARCHEO] Humanities and Social Sciences/Archaeology and Prehistory[SHS.ARCHEO]Humanities and Social Sciences/Archaeology and PrehistoryTransfertsÉchangesTechniques
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Conserved chromosomal clustering of genes governed by chromatin regulators in Drosophila

2008

Transcriptional analysis of chromatin regulator mutants in Drosophila melanogaster identified clusters of functionally related genes conserved in other insect species.

Model organismsanimal structuresTranscription GeneticEvolutionChromosomal Proteins Non-HistoneDrosòfila melanogasterGenome studiesDevelopmentBiologyNon-histone proteinAnimalsDrosophila ProteinsDrosòfila -- GenèticaTranscription factorGeneGeneticsMicroarray analysis techniquesResearchGene Expression ProfilingMutació (Biologia)fungiNuclear Proteinsbiology.organism_classificationChromatin Assembly and DisassemblyChromatinHistoneDrosophila melanogasterDrosofila melanogasterGene Expression RegulationMultigene Familybiology.proteinDrosophila melanogasterDrosophila ProteinGenètica del desenvolupamentTranscription FactorsGenome Biology
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Intraosseous monitoring of drilling in lumbar vertebrae by ultrasound: An experimental feasibility study.

2016

The rationale for this project is to evaluate the efficiency of a novel sonographic method for measurements of interosseous distances. The method utilizes a propagating ultrasonic beam through aqueous milieu which is directed as a jet into a drilled tract. We used a plastic model of human L5 vertebra and ex vivo specimen of L5 porcine vertebra and generated 2 mm in diameter tracts in vertebral pedicles. The tracts were created in the "desired" central direction and in the "wrong" medial and lateral directions. The drilled tracts and the residual, up to opposite cortex, distances were measured sonographically and mechanically and compared statistically. We show that "true" mechanical measure…

Models AnatomicVertebraeSwinelcsh:MedicineReflectionDistance Measurement01 natural sciences0302 clinical medicineMathematical and Statistical TechniquesBone DensityMedicine and Health SciencesOrthopedic Procedureslcsh:Science010301 acousticsMusculoskeletal SystemMeasurementMultidisciplinaryUltrasonic beamLumbar VertebraePhysicsUltrasoundClassical MechanicsAnatomymedicine.anatomical_structureConnective TissuePhysical SciencesEngineering and TechnologyRegression AnalysisTomographyAnatomyPlasticsGeologyStatistics (Mathematics)Research Articlemusculoskeletal diseasesMaterials ScienceMaterial PropertiesSurgical and Invasive Medical ProceduresLumbar vertebraeLinear Regression AnalysisResearch and Analysis Methods03 medical and health sciencesLumbar0103 physical sciencesmedicineAnimalsHumansL5 VertebraStatistical MethodsBoneUltrasonography Interventionalbusiness.industrylcsh:RDrillingBiology and Life SciencesSpineVertebraBiological TissueSignal ProcessingLinear ModelsFeasibility Studieslcsh:QbusinessTomography X-Ray Computed030217 neurology & neurosurgeryMathematicsPloS one
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Revisiting Plant Plasma Membrane Lipids in Tobacco: A Focus on Sphingolipids

2016

International audience; The lipid composition of plasma membrane (PM) and the corresponding detergent-insoluble membrane (DIM) fraction were analyzed with a specific focus on highly polar sphingolipids, so-called glycosyl inositol phosphorylceramides (GIPCs). Using tobacco (Nicotiana tabacum) 'Bright Yellow 2' cell suspension and leaves, evidence is provided that GIPCs represent up to 40 mol % of the PM lipids. Comparative analysis of DIMs with the PM showed an enrichment of 2-hydroxylated very-long-chain fatty acid-containing GIPCs and polyglycosylated GIPCs in the DIMs. Purified antibodies raised against these GIPCs were further used for immunogold-electron microscopy strategy, revealing …

Models Molecular0106 biological sciences0301 basic medicinePhysiology[SDV]Life Sciences [q-bio]Membrane lipidsNicotiana tabacumCell Culture TechniquesMembrane biologymacromolecular substancesPlant ScienceBiology01 natural sciencesGlycosphingolipidsCell membraneMembrane Lipids03 medical and health scienceschemistry.chemical_compoundMembrane MicrodomainsTobaccoGeneticsmedicine[SDV.BV]Life Sciences [q-bio]/Vegetal BiologyInositolGlycosylcardiovascular diseasesSphingolipidsMicroscopy ConfocalCell MembraneFatty Acidstechnology industry and agriculturePhytosterolsArticlesRaftbiology.organism_classificationSphingolipidPlant Leaves030104 developmental biologymedicine.anatomical_structureBiochemistrychemistry[SDE]Environmental Sciencescardiovascular systemlipids (amino acids peptides and proteins)010606 plant biology & botanyPlant Physiology
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Pharmacological activity of C10-substituted analogs of the high-affinity kainate receptor agonist dysiherbaine

2009

Kainate receptor antagonists have potential as therapeutic agents in a number of neuropathologies. Synthetic modification of the convulsant marine toxin neodysiherbaine A (NDH) previously yielded molecules with a diverse set of pharmacological actions on kainate receptors. Here we characterize three new synthetic analogs of NDH that contain substituents at the C10 position in the pyran ring of the marine toxin. The analogs exhibited high-affinity binding to the GluK1 (GluR5) subunit and lower affinity binding to GluK2 (GluR6) and GluK3 (GluR7) subunits in radioligand displacement assays with recombinant kainate and AMPA receptors. As well, the natural toxin NDH exhibited approximately 100-f…

Models MolecularAgonistKainic acidPatch-Clamp TechniquesTime FactorsStereochemistrymedicine.drug_classProtein subunitGreen Fluorescent ProteinsGlutamic AcidKainate receptorAMPA receptorMolecular Dynamics SimulationLigandsTransfectionTritiumBinding CompetitiveArticleMembrane PotentialsRadioligand AssayStructure-Activity RelationshipCellular and Molecular Neurosciencechemistry.chemical_compoundReceptors Kainic AcidExcitatory Amino Acid AgonistsmedicineRadioligandHumansReceptoralpha-Amino-3-hydroxy-5-methyl-4-isoxazolepropionic AcidCell Line TransformedPharmacologyAlanineKainic AcidDose-Response Relationship DrugMolecular StructureChemistryBridged Bicyclo Compounds HeterocyclicProtein SubunitsBiochemistryMutagenesis Site-DirectedMarine toxinNeuropharmacology
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Design, synthesis, and biological evaluation of nonsteroidal cycloalkane[d]isoxazole-containing androgen receptor modulators.

2012

We report here the design, preparation, and systematic evaluation of a novel cycloalkane[d]isoxazole pharmacophoric fragment-containing androgen receptor (AR) modulators. Cycloalkane[d]isoxazoles form new core structures that interact with the hydrophobic region of the AR ligand-binding domain. To systematize and rationalize the structure-activity relationship of the new fragment, we used molecular modeling to design a molecular library containing over 40 cycloalkane[d]isoxazole derivatives. The most potent compound, 4-(3a,4,5,6,7,7a-hexahydrobenzo[d]isoxazol-3-yl)-2-(trifluoromethyl)benzonitrile (6a), exhibits antiandrogenic activity significantly greater than that of the most widely used …

Models MolecularBicalutamideMolecular modelStereochemistryProtein ConformationChemistry Techniques Syntheticchemistry.chemical_compoundStructure-Activity RelationshipDrug DiscoveryChlorocebus aethiopsmedicineAnimalsIsoxazoleNonsteroidal Anti-AndrogensTrifluoromethylta1182CycloparaffinsIsoxazolesAndrogen receptorCycloalkaneBenzonitrilechemistryReceptors AndrogenDrug DesignCOS CellsMolecular MedicineHydroxyflutamidemedicine.drugJournal of medicinal chemistry
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Tryptophan quenching as linear sensor for oxygen binding of arthropod hemocyanins.

2008

Oxygen binding of hemocyanins results in an absorption band around 340nm and a strong quenching of the intrinsic tryptophan fluorescence. Our study analyses in detail the fluorescence quenching within two hemocyanins, a hexamer (Panulirus interruptus) and a 4 x 6-mer (Eurypelma californicum). Based on the comparison of calculated and measured transfer efficiencies we could show that: (1) For both hemocyanins FRET (fluorescence resonance energy transfer) is exclusively responsible for quenching of the tryptophan fluorescence upon oxygen binding. (2) Tryptophan quenching by FRET is independent of the oxy- or deoxy conformation of the protein. (3) The quenching takes place at the subunit level…

Models MolecularBiophysicschemistry.chemical_elementBiosensing TechniquesRandom hexamerPhotochemistryBiochemistryOxygenAbsorptionProtein structureAnimalsProtein Structure QuaternaryMolecular BiologyArthropodsQuenching (fluorescence)ChemistryTryptophanTryptophanFluorescenceOxygenFörster resonance energy transferSpectrometry FluorescenceEnergy TransferHemocyaninsOxygen bindingProtein BindingBiochimica et biophysica acta
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Design and construction of highly stable, protease-resistant chimeric avidins.

2005

The chicken avidin gene family consists of avidin and seven separate avidin-related genes (AVRs) 1-7. Avidin protein is a widely used biochemical tool, whereas the other family members have only recently been produced as recombinant proteins and characterized. In our previous study, AVR4 was found to be the most stable biotin binding protein thus far characterized (T(m) = 106.4 degrees C). In this study, we studied further the biotin-binding properties of AVR4. A decrease in the energy barrier between the biotin-bound and unbound state of AVR4 was observed when compared with that of avidin. The high resolution structure of AVR4 facilitated comparison of the structural details of avidin and …

Models MolecularBiotin bindingInsectaProtein familyProtein subunitRecombinant Fusion ProteinsMolecular Sequence DataBiotinBiosensing TechniquesBiologyProtein EngineeringBiochemistryProtein Structure SecondaryProtein structureAnimalsAmino Acid SequenceMolecular BiologyThermostabilityCalorimetry Differential ScanningSequence Homology Amino AcidTemperatureCell BiologyProtein engineeringAvidinRecombinant ProteinsProtein Structure TertiaryKineticsBiochemistryMicroscopy FluorescenceMutagenesisBiotinylationMutationbiology.proteinChromatography GelThermodynamicsElectrophoresis Polyacrylamide GelEndopeptidase KBaculoviridaeChickensAvidinChromatography LiquidPeptide HydrolasesProtein BindingThe Journal of biological chemistry
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