Search results for "throughput"
showing 10 items of 483 documents
Multi-beam cooperative frequency reuse for coordinated multi-point transmission
2010
Coordinated multi-point (CoMP) joint transmission is considered in the 3rd generation partnership project (3GPP) long term evolution (LTE)-advanced as a key technique to mitigate inter-cell interference and improve the cell-edge performance. To effectively apply CoMP joint transmission, efficient frequency reuse schemes need to be designed to support resource management cooperation among coordinated cells. However, most of the existing frequency reuse schemes are not suitable for CoMP systems due to not considering multi-point joint transmission scenarios in their frequency reuse rules. In addition, the restrictions of frequency resources in those schemes result in a high blocking probabili…
Performance analysis of the out-of-band signaling scheme for high speed wireless LANs
2005
In this paper, we study the performance of our earlier proposed out-of-band signaling (OBS) scheme for high speed wireless local area networks (WLANs). We employ the system approximation technique for modeling of the OBS scheme. An equivalent state dependent single server queue, that describes the OBS scheme, is constructed for the analysis of the throughput and delay performances. Moreover, we study the throughput optimization of the OBS scheme, which provides a means for optimizing the performance of the OBS scheme, given a particular network environment. Finally, we conduct several simulation experiments to validate our analytical results.
CUSHAW3: Sensitive and Accurate Base-Space and Color-Space Short-Read Alignment with Hybrid Seeding
2014
The majority of next-generation sequencing short-reads can be properly aligned by leading aligners at high speed. However, the alignment quality can still be further improved, since usually not all reads can be correctly aligned to large genomes, such as the human genome, even for simulated data. Moreover, even slight improvements in this area are important but challenging, and usually require significantly more computational endeavor. In this paper, we present CUSHAW3, an open-source parallelized, sensitive and accurate short-read aligner for both base-space and color-space sequences. In this aligner, we have investigated a hybrid seeding approach to improve alignment quality, which incorp…
Direct squencing from the minimal number of DNA molecules needed to fill a 454 picotiterplate
2014
Notice of Republication: This article was republished on June 17, 2014, to correct an error in the title. The publisher apologizes for the error. In addition, a typographical error was corrected in the Abstract. Please download this article again to view the correct version. The originally published, uncorrected article and the republished, corrected article are provided here for reference.
Next-Generation Sequencing-Based RiboMethSeq Protocol for Analysis of tRNA 2'-O-Methylation.
2016
Analysis of RNA modifications by traditional physico-chemical approaches is labor intensive, requires substantial amounts of input material and only allows site-by-site measurements. The recent development of qualitative and quantitative approaches based on next-generation sequencing (NGS) opens new perspectives for the analysis of various cellular RNA species. The Illumina sequencing-based RiboMethSeq protocol was initially developed and successfully applied for mapping of ribosomal RNA (rRNA) 2'-O-methylations. This method also gives excellent results in the quantitative analysis of rRNA modifications in different species and under varying growth condi…
Compressive biological sequence analysis and archival in the era of high-throughput sequencing technologies
2013
High-throughput sequencing technologies produce large collections of data, mainly DNA sequences with additional information, requiring the design of efficient and effective methodologies for both their compression and storage. In this context, we first provide a classification of the main techniques that have been proposed, according to three specific research directions that have emerged from the literature and, for each, we provide an overview of the current techniques. Finally, to make this review useful to researchers and technicians applying the existing software and tools, we include a synopsis of the main characteristics of the described approaches, including details on their impleme…
A High-Throughput Mechanical Activator for Cartilage Engineering Enables Rapid Screening of in vitro Response of Tissue Models to Physiological and S…
2021
Articular cartilage is crucially influenced by loading during development, health, and disease. However, our knowledge of the mechanical conditions that promote engineered cartilage maturation or tissue repair is still incomplete. Current in vitro models that allow precise control of the local mechanical environment have been dramatically limited by very low throughput, usually just a few specimens per experiment. To overcome this constraint, we have developed a new device for the high throughput compressive loading of tissue constructs: the High Throughput Mechanical Activator for Cartilage Engineering (HiT-MACE), which allows the mechanoactivation of 6 times more samples than current tech…
Coloring-based resource allocations in ad-hoc wireless networks
2011
It is well known that CSMA/CA protocols exhibit very poor performance in case of multi-hop transmissions, because of inter-link interference due to imperfect carrier sensing. We propose to control such an interference by preallocating temporal slots in which different sets of network nodes are allowed to contend for the channel access. The approach is based on distributed coloring algorithms with limited signaling overhead that can be customized as a function of the network topology and traffic load.
A Programmable Networked Processing Node for 3D Brain Vessels Reconstruction
2011
Real-time 3D imaging represents a developing trend in medical imaging. However, most of the 3D medical imaging algorithms are computationally intensive. In this paper, a programmable networked node for 3D brain vessels reconstruction is proposed. Starting from 2D PC-MRA (Phase-Contrast Magnetic Resonance Angiography) sequences, the node is able to generate the 3D brain vasculature using the MIP (Maximum Intensity Projection) algorithm. The node has been prototyped on the Celoxica RC203E board, equipped with a Virtex II FPGA, to get the advantages of an hardware implementation, reaching a better throughput with respect to analogous software implementations. Its generality and programmable ca…
On the Fidelity of IEEE 802.11 commercial cards
2006
The IEEE 802.11 D CF protocol is known to be fair in terms of long-term resource repartition among the contending stations. However, when considering real scenarios, where commercial 802.11 cards interact, very unpredictable as well as sometimes surprising behaviors emerge. Motivation of this paper is to investigate the reasons of the very evident disagreement between the theoretical IEEE 802.11 DCF protocol models and its practical implementations. Inparticular, we try to characterize the card behavior not only in terms of perceived throughput, but also in terms of low-level channel access operations. In fact, the simple throughput analysis does not allow to identify what affecting paramet…