Search results for "uncoating"

showing 7 items of 7 documents

Real-time Fluorescence Measurement of Enterovirus Uncoating

2019

Viruses need to open, i.e., uncoat, in order to release their genomes for efficient replication and translation. Especially for non-enveloped viruses, such as enteroviruses, the cues leading to uncoating are less well known. The status of the virus has previously been observed mainly by transmission electron microscopy using negative staining, cryo electron microscopy, X-ray crystallography or gradient separation (reviewed in Tuthill et al., 2010, Myllynen et al., 2016, Ruokolainen et al., 2019). However, monitoring of uncoating has been limited by the lack of methods detecting dynamic changes of the virions. Here, we present a real-time fluorescence based protocol, which detects the viral …

PicornavirusRNase PCryo-electron microscopyStrategy and ManagementvirusesspektroskopiainfektiotIndustrial and Manufacturing EngineeringVirusMethods ArticletutkimusmenetelmätRNaseNucleic acid structuregenomeEnterovirusbiologyChemistryMechanical EngineeringSYBR Green IIVirus UncoatingPicornavirusMetals and AlloysfluoresenssiRNAfluorescence spectroscopybiology.organism_classificationNegative stainCell biologyenteroviruksetRNAuncoating
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Hydrophobic pocket targeting probes for enteroviruses

2015

Visualization and tracking of viruses without compromising their functionality is crucial in order to understand virus targeting to cells and tissues, and to understand the subsequent subcellular steps leading to virus uncoating and replication. Enteroviruses are important human pathogens causing a vast number of acute infections, and are also suggested to contribute to the development of chronic diseases like type I diabetes. Here, we demonstrate a novel method to target site-specifically the hydrophobic pocket of enteroviruses. A probe, a derivative of Pleconaril, was developed and conjugated to various labels that enabled the visualization of enteroviruses under light and electron micros…

EchovirusEndosomevirusesCoxsackievirus InfectionsBiologyCoxsackievirusmedicine.disease_causeenterovirusesVirusCell Line TumormedicineHumansGeneral Materials Sciencemolecular probesta116OxazolesFluorescent DyesInfectivityOxadiazolesVirus Uncoatingta1182trackingbiology.organism_classificationMolecular biologyEnterovirus B HumanCapsidhydrophobic pocketCytoplasmBiophysicsGoldHydrophobic and Hydrophilic InteractionsNanoscale
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Permeability changes of integrin-containing multivesicular structures triggered by picornavirus entry.

2014

Cellular uptake of clustered α2β1-integrin induces the formation of membrane compartments that subsequently mature into a multivesicular body (MVB). Enhanced internalization mediated by clustered integrins was observed upon infection by the picornavirus echovirus 1 (EVI). We elucidated the structural features of virus-induced MVBs (vMVBs) in comparison to antibody-induced control MVBs (mock infection) by means of high-pressure cryo fixation of cells followed by immuno electron tomography during early entry of the virus. Three-dimensional tomograms revealed a marked increase in the size and complexity of these vMVBs and the intraluminal vesicles (ILVs) at 2 and 3.5 hours post infection (p.i.…

CytoplasmElectron Microscope TomographyEchovirusPicornaviruslcsh:MedicinePicornaviridaemedicine.disease_causeBiochemistryCell membrane2.1 Biological and endogenous factors2.2 Factors relating to the physical environmentAetiologylcsh:ScienceInternalizationmedia_common0303 health sciencesMicroscopyMicroscopy ConfocalMultidisciplinaryTumorbiology030302 biochemistry & molecular biologyMultivesicular Bodies3. Good healthCell biologymedicine.anatomical_structureInfectious DiseasesConfocalIntegrin alpha2beta1InfectionResearch ArticleBiotechnologyEndosomeGeneral Science & Technologymedia_common.quotation_subjectBiophysicsEndosomesMicrobiologyPermeabilityCell Line03 medical and health sciencesCell Line TumormedicineHumansMultivesicular BodyMolecular Biology030304 developmental biologyPicornaviridae Infectionslcsh:RVirus Uncoatingta1183Cell Membraneta1182Biology and Life SciencesComputational BiologyCell Biologybiology.organism_classificationEmerging Infectious DiseasesCytoplasmlcsh:Q
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The effect of PLC-inhibitor on echovirus 1 internalization probed with fluorescently labeled echovirus 1

2014

Echovirus 1 (EV1) kuuluu Pikornavirusperheeseen ja tarkemmin luokiteltuna Enterovirusten sukuun. EV1 on pieni ja vaipaton RNA-virus, jonka proteiinikuori koostuu neljästä proteiinista VP1-VP4. Infektion on osoitettu alkavan, kun EV1 tarttuu α2β1-integriiniin solun pinnalla, jonka jälkeen virus otetaan solun sisään kaveoliinivälitteistä endosytoosia sekä makropinosytoosia muistuttavalla mekanismilla. Toisaalta sitä, kuinka virus avautuu sekä vapauttaa RNA:nsa, ei vielä tarkalleen tiedetä. Tässä tutkimuksessa EV1 puhdistettiin ensin sakkaroosigradientilla, jonka jälkeen virus leimattiin fluoresoivalla amiinireaktiivisella värillä. Tulokset osoittivat, että leimauksen onnistumiseksi tarvitaan …

viruksetfluoresenssifluorescent labelingECHO-viruksetEchovirus 1uncoatingendocytosis inhibitorendosytoosiinhibiittorit
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Cholesterol Dependence of Collagen and Echovirus 1 Trafficking along the Novel α2β1 Integrin Internalization Pathway

2013

We have previously shown that soluble collagen and a human pathogen, echovirus 1 (EV1) cluster α2β1 integrin on the plasma membrane and cause their internalization into cytoplasmic endosomes. Here we show that cholesterol plays a major role not only in the uptake of α2β1 integrin and its ligands but also in the formation of α2 integrin-specific multivesicular bodies (α2-MVBs) and virus infection. EV1 infection and α2β1 integrin internalization were totally halted by low amounts of the cholesterol-aggregating drugs filipin or nystatin. Inhibition of cholesterol synthesis and accumulation of lanosterol after ketoconazole treatment inhibited uptake of collagen, virus and clustered integrin, an…

IntegrinsNystatinFluorescent Antibody TechniqueBiochemistryCollagen receptorchemistry.chemical_compoundBINDINGMolecular Cell BiologyInternalizationLipid raftREQUIRESmedia_common0303 health sciencesMicroscopy ConfocalMultidisciplinarybiologyQRIMMUNODEFICIENCY-VIRUS TYPE-1RNA REPLICATIONCellular StructuresExtracellular MatrixEnterovirus B Human3. Good healthCell biologyProtein TransportCholesterolENTRYCytochemistryMedicineMembranes and Sortinglipids (amino acids peptides and proteins)CollagenIntegrin alpha2beta1Research ArticleSignal TransductionViral EntryEndosomeSciencemedia_common.quotation_subjecteducationIntegrinLOW-DENSITY-LIPOPROTEINMicrobiologyFilipinClathrinGPI-ANCHORED PROTEINS03 medical and health sciencesVirologyCell Line TumorCell AdhesionHumansFilipinBiology030304 developmental biology030306 microbiologyCell MembraneVirus Uncoatingta1182TRANSPORTLIPID RAFTSMicroscopy ElectronSubcellular Organelleschemistrybiology.protein3111 BiomedicineChromatography Thin LayerCELL-MEMBRANESViral Transmission and InfectionPLoS ONE
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Raman Spectroscopic Signatures of Echovirus 1 Uncoating

2014

ABSTRACT In recent decades, Raman spectroscopy has entered the biological and medical fields. It enables nondestructive analysis of structural details at the molecular level and has been used to study viruses and their constituents. Here, we used Raman spectroscopy to study echovirus 1 (EV1), a small, nonenveloped human pathogen, in two different uncoating states induced by heat treatments. Raman signals of capsid proteins and RNA genome were observed from the intact virus, the uncoating intermediate, and disrupted virions. Transmission electron microscopy data revealed general structural changes between the studied particles. Compared to spectral characteristics of proteins in the intact v…

Hot TemperatureEchovirusEndosomeImmunologyBiologySpectrum Analysis Ramanmedicine.disease_causeMicrobiologyVirusViral Proteinssymbols.namesakeProtein structureMicroscopy Electron TransmissionVirus UncoatingVirologyChlorocebus aethiopsmedicineAnimalsVero CellsStructure and AssemblyVirus UncoatingVirionRNAsecondary structureVirologyEnterovirus B Humanexternalized polypeptideCapsidInsect ScienceBiophysicssymbolsRNA Viralpod mottle virusRaman spectroscopyJournal of Virology
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Extracellular Albumin and Endosomal Ions Prime Enterovirus Particles for Uncoating That Can Be Prevented by Fatty Acid Saturation

2019

ABSTRACT There is limited information about the molecular triggers leading to the uncoating of enteroviruses under physiological conditions. Using real-time spectroscopy and sucrose gradients with radioactively labeled virus, we show at 37°C, the formation of albumin-triggered, metastable uncoating intermediate of echovirus 1 without receptor engagement. This conversion was blocked by saturating the albumin with fatty acids. High potassium but low sodium and calcium concentrations, mimicking the endosomal environment, also induced the formation of a metastable uncoating intermediate of echovirus 1. Together, these factors boosted the formation of the uncoating intermediate, and the infectiv…

Models MolecularEchovirusHot TemperatureEndosomevirusesImmunologycryoEM structurerasvahapotEndosomesBiologymedicine.disease_causeMicrobiologyDivalentCell Line03 medical and health sciencesVirologyAlbuminsChlorocebus aethiopsExtracellularmedicineAnimalsalbumin030304 developmental biologychemistry.chemical_classificationalbumiinit0303 health sciencesbiokemiaionitenterovirus030302 biochemistry & molecular biologyCryoelectron MicroscopyFatty AcidsFatty acidRNAVirus-Cell InteractionsEnterovirus B HumanenteroviruksetchemistryCapsidvirologia13. Climate actionInsect ScienceBiophysicsCapsid ProteinsuncoatingLow sodium
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