Search results for "unfolding"
showing 9 items of 19 documents
Conformational response to ligand binding in phosphomannomutase2: insights into inborn glycosylation disorder.
2014
Background: Mutations in phosphomannomutase2 cause glycosylation disorder, a disease without a cure that will largely benefit from accurate ligand-bound models. Results: We obtained two models of phospomannomutase2 bound to glucose 1,6-bisphosphate and validated them with limited proteolysis. Conclusion: Ligand binding induces a large conformational transition in PMM2. Significance: We produce and validate closed-form models of PMM2 that represent a starting point for rational drug discovery.
The non-bilayer lipid MGDG stabilizes the major light-harvesting complex (LHCII) against unfolding.
2017
Abstract In the photosynthetic apparatus of plants a high proportion of LHCII protein is needed to integrate 50% non-bilayer lipid MGDG into the lamellar thylakoid membrane, but whether and how the stability of the protein is also affected is not known. Here we use single-molecule force spectroscopy to map the stability of LHCII against mechanical unfolding along the polypeptide chain as a function of oligomerization state and lipid composition. Comparing unfolding forces between monomeric and trimeric LHCII demonstrates that the stability does not increase significantly upon trimerization but can mainly be correlated with specific contact sites between adjacent monomers. In contrast, unfol…
Irreversible gelation of thermally unfolded proteins:structural and mechanical properties of lysozyme aggregates
2010
The formation of protein aggregates is important in many fields of life science and technology. The morphological and mechanical properties of protein solutions depend upon the molecular conformation and thermodynamic and environmental conditions. Non-native or unfolded proteins may be kinetically trapped into irreversible aggregates and undergo precipitation or gelation. Here, we study the thermal aggregation of lysozyme in neutral solutions. We characterise the irreversible unfolding of lysozyme by differential scanning calorimetry. The structural properties of aggregates and their mechanisms of formation with the eventual gelation are studied at high temperature by spectroscopic, rheolog…
The energy spectrum of atmospheric neutrinos between 2 and 200 TeV with the AMANDA-II detector
2010
The muon and anti-muon neutrino energy spectrum is determined from 2000-2003 AMANDA telescope data using regularised unfolding. This is the first measurement of atmospheric neutrinos in the energy range 2 - 200 TeV. The result is compared to different atmospheric neutrino models and it is compatible with the atmospheric neutrinos from pion and kaon decays. No significant contribution from charm hadron decays or extraterrestrial neutrinos is detected. The capabilities to improve the measurement of the neutrino spectrum with the successor experiment IceCube are discussed.
Curvature and Torsion of Protein Main Chain as Local Order Parameters of Protein Unfolding
2020
International audience; Thermal protein unfolding resembles a global (two-state) phase transition. At the local scale, protein unfolding is, however, heterogeneous and probe dependent. Here, we consider local order parameters defined by the local curvature and torsion of the protein main chain. Because chemical shift (CS) measured by NMR spectroscopy is extremely sensitive to the local atomic environment, CS has served as a local probe of thermal unfolding of proteins by varying the position of the atomic isotope along the amino-acid sequence. The variation of the CS of each C(alpha) atom along the sequence as a function of the temperature defines a local heat-induced denaturation curve. We…
Mechanical unfolding pathway of a model β-peptide foldamer.
2015
Foldamers constructed from oligomers of β-peptides form stable secondary helix structures already for small chain lengths, which makes them ideal candidates for the investigation of the (un)folding of polypeptides. Here, the results of molecular simulations of the mechanical unfolding of a β-heptapeptide in methanol solvent revealing the detailed unfolding pathway are reported. The unfolding process is shown to proceed via a stable intermediate even for such a small system. This result is arrived at performing non-equilibrium force ramp simulations employing different pulling velocities and also using standard calculations of the potential of mean force, i.e., the free energy as a function …
Landscape Architecture and the Green Deal Dare: Five Successful Experiences in Urban Open Spaces
2022
The present work focuses on European cities’ environments and open spaces, aiming to demonstrate how, through landscape architecture, it is possible to respond effectively to many of the ecological and social hardships that the Green Deal aspires to alleviate. It was signed in 2019 by all of the member countries of the Union, seeks to reverse the climate change trend by establishing a series of goals for improving environmental and economic quality for 2030 and 2050 and also aims to enact social justice in rural areas and in the urban environment. Landscape architecture, which is the art of combining the physical and immaterial elements in cities’ open spaces, is taken in this w…
Unfolding of saddle-nodes and their Dulac time
2016
Altres ajuts: UNAB10-4E-378, co-funded by ERDF "A way to build Europe" and by the French ANR-11-BS01-0009 STAAVF. In this paper we study unfoldings of saddle-nodes and their Dulac time. By unfolding a saddle-node, saddles and nodes appear. In the first result (Theorem A) we give a uniform asymptotic expansion of the trajectories arriving at the node. Uniformity is with respect to all parameters including the unfolding parameter bringing the node to a saddle-node and a parameter belonging to a space of functions. In the second part, we apply this first result for proving a regularity result (Theorem B) on the Dulac time (time of Dulac map) of an unfolding of a saddle-node. This result is a b…
One-parameter family of Clairaut-Liouville metrics
2007
Riemannian metrics with singularities are considered on the $2$-sphere of revolution. The analysis of such singularities is motivated by examples stemming from mechanics and related to projections of higher dimensional (regular) sub-Riemannian distributions. An unfolding of the metrics in the form of an homotopy from the canonical metric on $\SS^2$ is defined which allows to analyze the singular case as a limit of standard Riemannian ones. A bifurcation of the conjugate locus for points on the singularity is finally exhibited.