Search results for "vox"
showing 10 items of 126 documents
Approximation of Pore Space with Ellipsoids: A Comparison of a Geometrical Method with a Statistical one
2018
We work with tomographic images of pore space in soil. The images have large dimensions and so in order to speed-up biological simulations (as drainage or diffusion process in soil), we want to describe the pore space with a number of geometrical primitives significantly smaller than the number of voxels in pore space. In this paper, we use the curve skeleton of a volume to segment it into some regions. We describe the method to compute the curve skeleton and to segment it with a simple segment approximation. We approximate each obtained region with an ellipsoid. The set of final ellipsoids represents the geometry of pore space and will be used in future simulations. We compare this method …
Diffusion map for clustering fMRI spatial maps extracted by Indipendent Component Analysis
2013
Functional magnetic resonance imaging (fMRI) produces data about activity inside the brain, from which spatial maps can be extracted by independent component analysis (ICA). In datasets, there are n spatial maps that contain p voxels. The number of voxels is very high compared to the number of analyzed spatial maps. Clustering of the spatial maps is usually based on correlation matrices. This usually works well, although such a similarity matrix inherently can explain only a certain amount of the total variance contained in the high-dimensional data where n is relatively small but p is large. For high-dimensional space, it is reasonable to perform dimensionality reduction before clustering.…
Performance evaluation of a high resolution dedicated breast PET scanner
2016
Purpose: Early stage breast cancers may not be visible on a whole-body PET scan. To overcome whole-body PET limitations, several dedicated breast positron emission tomography (DbPET) systems have emerged nowadays aiming to improve spatial resolution. In this work the authors evaluate the performance of a high resolution dedicated breast PET scanner (Mammi-PET, Oncovision). Methods: Global status, uniformity, sensitivity, energy, and spatial resolution were measured. Spheres of different sizes (2.5, 4, 5, and 6 mm diameter) and various 18 fluorodeoxyglucose (18F-FDG) activity concentrations were randomly inserted in a gelatine breast phantom developed at our institution. Several lesion-to-ba…
Unsupervised tissue classification of brain MR images for voxel-based morphometry analysis
2016
In this article, a fully unsupervised method for brain tissue segmentation of T1-weighted MRI 3D volumes is proposed. The method uses the Fuzzy C-Means (FCM) clustering algorithm and a Fully Connected Cascade Neural Network (FCCNN) classifier. Traditional manual segmentation methods require neuro-radiological expertise and significant time while semiautomatic methods depend on parameter's setup and trial-and-error methodologies that may lead to high intraoperator/interoperator variability. The proposed method selects the most useful MRI data according to FCM fuzziness values and trains the FCCNN to learn to classify brain’ tissues into White Matter, Gray Matter, and Cerebro-Spinal Fluid in …
Low-cost approximate reconstructing of heterogeneous microstructures
2016
We propose an approximate reconstruction of random heterogeneous microstructures using the two-exponent power-law (TEPL). This rule originates from the entropic descriptor (ED) that is a multi-scale measure of spatial inhomogeneity for a given microstructure. A digitized target sample is a cube of linear size L in voxels. Then, a number of trial configurations can be generated by a model of overlapping spheres of a fixed radius, which are randomly distributed on a regular lattice. The TEPL describes the averaged maximum of the ED as a function of the phase concentration and the radius. Thus, it can be used to determine the radius. The suggested approach is tested on surrogate samples of cer…
A generic TG-186 shielded applicator for commissioning model-based dose calculation algorithms for high-dose-rate Ir-192 brachytherapy
2017
PurposeA joint working group was created by the American Association of Physicists in Medicine (AAPM), the European Society for Radiotherapy and Oncology (ESTRO), and the Australasian Brachytherapy Group (ABG) with the charge, among others, to develop a set of well-defined test case plans and perform calculations and comparisons with model-based dose calculation algorithms (MBDCAs). Its main goal is to facilitate a smooth transition from the AAPM Task Group No. 43 (TG-43) dose calculation formalism, widely being used in clinical practice for brachytherapy, to the one proposed by Task Group No. 186 (TG-186) for MBDCAs. To do so, in this work a hypothetical, generic high-dose rate (HDR) Ir-19…
Three-dimensional image analytical detection of intussusceptive pillars in murine lung
2015
A variety of diseases can lead to loss of lung tissue. Currently, this can be treated only symptomatically. In mice, a complete compensatory lung growth within 21 days after resection of the left lung can be observed. Understanding and transferring this concept of compensatory lung growth to humans would greatly improve therapeutic options. Lung growth is always accompanied by a process called angiogenesis forming new capillary blood vessels from preexisting ones. Among the processes during lung growth, the formation of transluminal tissue pillars within the capillary vessels (intussusceptive pillars) is observed. Therefore, pillars can be understood as an indicator for active angiogenesis …
Quadrature coils for magnetic resonance spectroscopy in the detection of prostate cancer: Single voxel acquisition does not improve the diagnostic ac…
2011
Abstract Objective To determine the viability of quadrature coils for detecting prostate cancer using single voxel and multivoxel spectroscopy images. Material and methods We used a quadrature coil on a 1.5T MR scanner to evaluate 23 patients with suspected prostate cancer and prostate specific antigen levels greater than 4 ng/ml (mean 12 ± 8 ng/ml), independently of findings at digital rectal examination. We acquired T2-weighted images and MR spectroscopy images. We also acquired single voxel studies in areas in which the T2-weighted images or the multivoxel images were altered. We used a citrate solution to verify the spectroscopic calibration. Results Using spectroscopy images and a (Cho…
Grey matter reduction in the occipitotemporal cortex in Spanish children with dyslexia: A voxel-based morphometry study
2020
Abstract Structural and functional neuroimaging studies have reported brain alterations in occipitotemporal, temporoparietal, and left frontal areas in dyslexic patients. These areas have been linked to reading skill impairments, due to their involvement in word recognition and processing. However, most of the patients in these studies were speakers of languages with a deep orthography. In this study, we used voxel-based morphometry (VBM) to investigate brain differences in grey matter volume associated with a transparent language in a sample of 25 native Spanish participants (13 dyslexic and 12 non-dyslexic children). Results revealed a volume reduction in the left occipitotemporal cortex …