0000000000001787

AUTHOR

Javier Forment

0000-0002-1872-4061

showing 6 related works from this author

Identifying Early Warning Signals for the Sudden Transition from Mild to Severe Tobacco Etch Disease by Dynamical Network Biomarkers

2019

This article belongs to the Special Issue The Complexity of the Potyviral Interaction Network.

0106 biological sciences0301 basic medicineComplex systemsSystems biologyPotyvirusDiseaseBiologytobacco etch virusSeverity of Illness Index01 natural sciencesArticlePlant VirusesTranscriptomeViral Proteins03 medical and health sciencesPlant-virus interactionpotyvirusGene Expression Regulation PlantVirologyProtein Interaction MappingTobaccoGene Regulatory NetworksProtein Interaction Mapscomplex systemsGenePlant DiseasesGeneticsTransition (genetics)Tobacco etch virusGene Expression Profilingsystems biologyDNBBiotic stressresponse to infectionbiology.organism_classificationplant-virus interactionTobacco etch virusphase transitionsprotein-protein interaction networks030104 developmental biologyInfectious DiseasesPhase transitionsHost-Pathogen InteractionsMutationBiomarker (medicine)BiomarkersSignal Transduction010606 plant biology & botanyViruses
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A genetic approach reveals different modes of action of prefoldins

2021

17 p.-7 fig.

Regular IssueAcademicSubjects/SCI01280PhysiologyProtein subunitMutantArabidopsisPlant ScienceChaperonin03 medical and health sciences0302 clinical medicineArabidopsisGeneticsBIOQUIMICA Y BIOLOGIA MOLECULARArabidopsis thalianaTranscription factorActinResearch Articles030304 developmental biology0303 health sciencesAcademicSubjects/SCI01270biologyErrataArabidopsis ProteinsAcademicSubjects/SCI02288AcademicSubjects/SCI02287AcademicSubjects/SCI02286Genes Development and EvolutionPrefoldin complexbiology.organism_classificationCell biologyGENETICA030217 neurology & neurosurgeryMolecular ChaperonesTranscription Factors
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Revisiting the cysteine-rich proteins encoded in the 3’-proximal open reading frame of the positive-sense single-stranded RNA of some monopartite fil…

2020

A reexamination of proteins with conserved cysteines and basic amino acids encoded by the 3 '-proximal gene of the positive-sense single-stranded RNA of some monopartite filamentous plant viruses has been carried out. The cysteines are involved in a putative Zn-finger domain, which, together with the basic amino acids, form part of the nuclear or nucleolar localization signals. An in-depth study of one of these proteins, p15 from grapevine B virus (GVB), has shown: (i) a three-dimensional structure with four alpha-helices predicted by two independent in silico approaches, (ii) the nucleolus as the main accumulation site by applying confocal laser microscopy to a fusion between p15 and the g…

Models MolecularProtein Conformation alpha-HelicalGrapevine virus BAgroinfiltrationEvolutionProtein ConformationProtein DomainProtein domainNicotiana benthamianaGene ExpressionBiologyEvolution MolecularOpen Reading Frames03 medical and health sciencesViral ProteinsProtein DomainsPlant CellsVirologyTobaccoGene expressionAmino Acid SequenceCloning MolecularGenePhylogeny030304 developmental biologyGenetics0303 health sciencesSequence Homology Amino Acid030306 microbiologyRNASettore AGR/12 - Patologia VegetaleGeneral Medicinebiology.organism_classificationVirologyRecombinant ProteinsPlant LeavesRNA silencingRNA ViralFlexiviridaeSequence AlignmentModel
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The transcriptome of Echinostoma caproni adults: further characterization of the secretome and identification of new potential drug targets.

2013

Abstract Echinostomes are cosmopolitan parasites that infect a large number of different warm-blooded hosts, both in nature and in the laboratory. They also constitute an important group of food-borne trematodes of public health importance mainly in Southeast Asia and the Far East. In addition, echinostomes are an ideal model to study several aspects of intestinal helminth biology, since they present a number of advantages. For example, echinostomes are large worms whose life cycle is relatively easy to maintain in the laboratory. Recently, several studies documented their great value in the study of intestinal helminth–vertebrate host relationship. Detailed knowledge of their genome, trans…

AnthelminticsEchinostomiasisProteomeved/biologyved/biology.organism_classification_rank.speciesBiophysicsComputational biologyHelminth ProteinsBiologyBiochemistryMolecular biologyGenomeHomology (biology)TranscriptomeSecretory proteinMetabolomicsDrug Delivery SystemsEchinostomaProteomeHelminthsAnimalsAmino Acid SequenceModel organismJournal of proteomics
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The transcriptome analysis of Strongyloides stercoralis L3i larvae reveals targets for intervention in a neglected disease.

2012

Background: Strongyloidiasis is one of the most neglected diseases distributed worldwide with endemic areas in developed countries, where chronic infections are life threatening. Despite its impact, very little is known about the molecular biology of the parasite involved and its interplay with its hosts. Next generation sequencing technologies now provide unique opportunities to rapidly address these questions. Principal Findings: Here we present the first transcriptome of the third larval stage of S. stercoralis using 454 sequencing coupled with semi-automated bioinformatic analyses. 253,266 raw sequence reads were assembled into 11,250 contiguous sequences, most of which were novel. 8037…

lcsh:Arctic medicine. Tropical medicineSequence analysisHaemonchus-contortuslcsh:RC955-962Molecular Sequence DataComputational biologyBiologyBioinformaticsDNA sequencingStrongyloides stercoralisTranscriptomeParasitic DiseasesmedicineAnimalsHumansDictyocaulus-viviparusGene Expression Profilinglcsh:Public aspects of medicinePublic Health Environmental and Occupational HealthNeglected DiseasesFunctional genomicslcsh:RA1-1270Sequence Analysis DNADNA Protozoanmedicine.diseasebiology.organism_classificationGene expression profilingInfectious DiseasesStrongyloidiasisLarvaHost-Pathogen InteractionsStrongyloidesStrongyloidiasisMedicineHelminth-parasitesStrongyloides stercoralisFunctional genomicsResearch ArticleNeglected Tropical DiseasesPLoS Neglected Tropical Diseases
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A genetic approach to dissect the role of prefoldins in Arabidopsis

2021

SummaryThe prefoldin complex (PFDc) was identified in humans as co-chaperone of the cytosolic chaperonin TRiC/CCT. It is conserved in eukaryotes and is composed of subunits PFD1 to 6. PFDc-TRiC/CCT operates folding actin and tubulins. In addition to this function, PFDs participate in a wide range of cellular processes, both in the cytoplasm and in the nucleus, and their malfunction cause developmental alterations and disease in animals, and altered growth and environmental responses in yeast and plants. Genetic analyses in yeast indicate that not all functions performed by PFDs require the participation of the canonical complex. The lack of systematic genetic analyses in higher eukaryotes m…

CytoplasmProtein subunitArabidopsisMutantBiologyPrefoldin complexbiology.organism_classificationTranscription factorActinFunction (biology)Cell biology
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