0000000000009163

AUTHOR

Jean-christophe Simon

showing 10 related works from this author

Genome reduction of the aphid endosymbiont Buchnera aphidicola in a recent evolutionary time scale.

2007

International audience; Genome reduction, a typical feature of symbiotic bacteria, was analyzed in the last stages of evolution of Buchnera aphidicola, the primary aphid endosymbiont, in two neutrally evolving regions: the pseudogene cmk and an intergenic region. These two regions were examined in endosymbionts from several lineages of their aphid host Rhopalosiphum padi, and different species of the same genus, whose divergence times ranged from 0.62 to 19.51 million years. Estimates of nucleotide substitution rates were between 4.3 and 6.7 x 10(-9) substitution/site/year, with G or C nucleotides being substituted around four times more frequently than A or T. Two different types of indel …

0106 biological sciencesTime FactorsPseudogeneBiology010603 evolutionary biology01 natural sciencesGenomeDNA MitochondrialEvolution Molecular03 medical and health sciencesIntergenic regionBuchneraPhylogeneticsGeneticsAnimalsMolecular clockIndelSymbiosisPhylogeny030304 developmental biologyGenetics0303 health sciences[SDV.GEN]Life Sciences [q-bio]/GeneticsBase SequenceGeographyNucleotidesGeneral Medicinebiology.organism_classificationFixation (population genetics)HaplotypesAphidsCalibrationMutationBuchneraGenome BacterialGene
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Identification des déterminants génétiques impliqués dans les défenses du pois contre le puceron Acyrthosiphon pisum.

2021

National audience; Le pois (Pisum sativum) constitue une culture d’importance majeure parmi les légumineuses pour ses qualités de plante protéagineuse, notamment en Europe en réduisant la part de protéines végétales importées ainsi que pour son rôle dans la rotation des cultures en fixant l’azote atmosphérique dans le sol. Cependant, ces dernières années, les rendements ont été rendus instables dus aux contraintes biotiques et abiotiques. Pour lutter contre certains ravageurs, les producteurs ont recours à de grandes quantités de pesticides qui sont coûteuses et dangereuses pour l’environnement et la santé humaine. Pour ces raisons, des alternatives sont mises en œuvre tels que le développe…

[SDV] Life Sciences [q-bio][SDV]Life Sciences [q-bio]GWASinteraction hôte/non-hôterésistance génétiquebiotypePisum sativum
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Phylogenetic evidence for hybrid origins of asexual lineages in an aphid species

2003

International audience; Understanding the mode of origin of asexuality is central to ongoing debates concerning the evolution and maintenance of sexual reproduction in eukaryotes. This is because it has profound consequences for patterns of genetic diversity and ecological adaptability of asexual lineages, hence on the outcome of competition with sexual relatives both in short and longer terms. Among the possible routes to asexuality, hybridization is a very common mechanism in animals and plants. Aphids present frequent transitions from their ancestral reproductive mode (cyclical parthenogenesis) to permanent asexuality, but the mode of origin of asexual lineages is generally not known bec…

0106 biological sciencesMitochondrial DNAHeterozygoteEvolution of sexual reproduction[SDV]Life Sciences [q-bio]Parthenogenesis010603 evolutionary biology01 natural sciencesAsexualityRhopalosiphum padiEvolution Molecular03 medical and health sciencesReproduction AsexualGeneticsAnimalsCluster AnalysisAllele sequence divergenceHybridizationPhylogenyPolymorphism Single-Stranded ConformationalEcology Evolution Behavior and Systematics030304 developmental biologyGeneticsAphidLikelihood Functions0303 health sciencesbiologyPhylogenetic treeModels GeneticParthenogenesisSequence Analysis DNAbiology.organism_classificationNuclear DNASexual reproductionEvolution of sexAphids[SDE]Environmental SciencesHybridization GeneticGeneral Agricultural and Biological SciencesMicrosatellite Repeats
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Genetic variation in natural populations of the aphid Rhopalosiphum padi as revealed by maternally inherited markers

1996

A survey on 148 clones of the aphid Rhopalosiphum padi from 11 widespread localities has been carried out to study the genetic structure of populations of this species as revealed by mitochondrial DNA restriction site and length polymorphisms as well as by restriction site analysis of a maternally inherited plasmid carried by the aphid eubacterial endosymbiont Buchnera aphidicola. Our results support the existence in the area under study of two main aphid maternal lineages strikingly coincidental with the two main reproductive categories displayed by this species. Those aphid clones possessing an incomplete life cycle that lacks the sexual phase (anholocyclic or androcyclic clones) show mit…

0106 biological sciencesGeneticseducation.field_of_studyAphidMitochondrial DNAPopulationHaplotypebiochemical phenomena metabolism and nutritionBiologybiology.organism_classificationGENETIQUE MITOCHONDRIALE010603 evolutionary biology01 natural sciencesINSECTE010602 entomologyRestriction siteRhopalosiphum padiGenetic variation[SDV.BBM] Life Sciences [q-bio]/Biochemistry Molecular BiologyGenetics[SDV.BBM]Life Sciences [q-bio]/Biochemistry Molecular BiologyBuchneraeducationComputingMilieux_MISCELLANEOUSEcology Evolution Behavior and SystematicsMolecular Ecology
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Reinventing the Wheel and Making It Round Again: Evolutionary Convergence in Buchnera-Serratia Symbiotic Consortia between the Distantly Related Lach…

2016

International audience; Virtually all aphids (Aphididae) harbor Buchnera aphidicola as an obligate endosymbiont to compensate nutritional deficiencies arising from their phloem diet. Many species within the Lachninae subfamily seem to be consistently associated also with Serratia symbiotica We have previously shown that both Cinara (Cinara) cedri and Cinara (Cupressobium) tujafilina (Lachninae: Eulachnini tribe) have indeed established co-obligate associations with both Buchnera and S. symbiotica However, while Buchnera genomes of both Cinara species are similar, genome degradation differs greatly between the two S. symbiotica strains. To gain insight into the essentiality and degree of int…

0301 basic medicineSerratiaLachninaeBiodiversité et EcologieGenomeaphid endosymbiontBiodiversity and EcologyEvolution Molecular03 medical and health sciencesBuchneraPhylogeneticsRNA Ribosomal 16SBotanyGeneticsAnimalsSymbiosisPhylogenyEcology Evolution Behavior and SystematicsBuchnera aphidicola;Lachninae;Serratia symbiotica;aphid endosymbiont;co-obligate;symbiont settlementGeneticssymbiont settlementAphidbiologyObligategénomefood and beveragesbuchnera aphidicolaAphididaeSequence Analysis DNASerratia symbioticabiochemical phenomena metabolism and nutritionbiology.organism_classificationbactérie endosymbiotiqueTuberolachnus salignussymbiont030104 developmental biologypuceronAphidsCinaraévolution génomique[SDE.BE]Environmental Sciences/Biodiversity and EcologyBuchneraco-obligateGenome BacterialResearch Article
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Host-based divergence in populations of the pea aphid: insights from nuclear markers and the prevalence of facultative symbionts.

2003

In North America, the pea aphid Acyrthosiphon pisum encompasses ecologically and genetically distinct host races that offer an ideal biological system for studies on sympatric speciation. In addition to its obligate symbiont Buchnera, pea aphids harbour several facultative and phylogenetically distant symbionts. We explored the relationships between host races of A. pisum and their symbiotic microbiota to gain insights into the historical process of ecological specialization and symbiotic acquisition in this aphid. We used allozyme and microsatellite markers to analyse the extent of genetic differentiation between populations of A. pisum on pea, alfalfa and clover in France. In parallel, we…

Adaptation BiologicalHamiltonella defensaGeneral Biochemistry Genetics and Molecular BiologyBuchneraGene FrequencyAnimalsSelection GeneticSymbiosisEcosystemPhylogenyGeneral Environmental ScienceDNA PrimersFacultativeAphidGeneral Immunology and MicrobiologybiologyHost (biology)Ecologyfood and beveragesFabaceaeGeneral MedicineSequence Analysis DNAbiochemical phenomena metabolism and nutritionbiology.organism_classificationAcyrthosiphon pisumSympatric speciationEvolutionary biologyAphidsFranceGeneral Agricultural and Biological SciencesBuchneraSymbiotic bacteriaMicrosatellite RepeatsResearch ArticleProceedings. Biological sciences
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Happens in the best of subfamilies: establishment and repeated replacements of co-obligate secondary endosymbionts within Lachninae aphids.

2016

SummaryVirtually all aphids maintain an obligate mutualistic symbiosis with bacteria from theBuchneragenus, which produce essential nutrients for their aphid hosts. Most aphids from the Lachninae subfamily have been consistently found to house additional endosymbionts, mainlySerratia symbiotica. This apparent dependence on secondary endosymbionts was proposed to have been triggered by the loss of the riboflavin biosynthetic capability byBuchnerain the Lachninae last common ancestor. However, an integral large-scale analysis of secondary endosymbionts in the Lachninae is still missing, hampering the interpretation of the evolutionary and genomic analyses of these endosymbionts. Here, we anal…

0301 basic medicine0106 biological sciencesMost recent common ancestorSerratiaSubfamily[SDV]Life Sciences [q-bio]aphididaeinteraction hôte symbioteBiologyMicrobiology010603 evolutionary biology01 natural sciencesSerratia03 medical and health sciencesSymbiosisPhylogeneticsAnimalsbuchneraPhylogenyEcology Evolution Behavior and Systematics030304 developmental biology0303 health sciencesAphidObligatefungifood and beveragesbiochemical phenomena metabolism and nutritionbiology.organism_classificationbactérie endosymbiotiquesymbiosis030104 developmental biologyEvolutionary biologypuceronAphidsTissue tropismbacteriaBuchnerasymbioseBacteria
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Molecular characterization of cyclic and obligate parthenogens in the aphid Rhopalosiphum padi (L.)

1996

Holocyclic clones of the aphid Rhopalosiphum padi (L.) reproduce by cyclic parthenogenesis, whereas anholocyclic individuals are obligate parthenogens. Mitochondrial DNA (mtDNA) and random amplified polymorphic DNA markers in R . padi as well as plasmid DNA markers of its bacterial endosymbiont, Buchnera aphidicola , were examined to determine the extent of genetic divergence between clones with these differing breeding systems. These analyses revealed that cyclically parthenogenetic lineages possessed differing mtDNA and plasmid haplotypes than most obligately asexual clones. The extent of sequence divergence between these maternally inherited molecules suggests a relatively ancient origin…

[SDE] Environmental SciencesMale0106 biological sciencesMitochondrial DNAGenetic Linkage[SDV]Life Sciences [q-bio]Molecular Sequence DataParthenogenesisBiologyDNA Mitochondrial010603 evolutionary biology01 natural sciencesGeneral Biochemistry Genetics and Molecular Biology03 medical and health sciencesPlasmidRhopalosiphum padiAnimalsGeneComputingMilieux_MISCELLANEOUSDNA Primers030304 developmental biologyGeneral Environmental ScienceGenetics0303 health sciencesBase SequenceGeneral Immunology and MicrobiologyObligateGeneral Medicinebiology.organism_classificationRandom Amplified Polymorphic DNA Technique[SDV] Life Sciences [q-bio]Genetic divergenceHaplotypesGenetic markerAphids[SDE]Environmental SciencesFemaleGeneral Agricultural and Biological SciencesBuchneraPlasmidsProceedings of the Royal Society of London. Series B: Biological Sciences
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2006

Aphids are the leading pests in agricultural crops. A large-scale sequencing of 40,904 ESTs from the pea aphid Acyrthosiphon pisum was carried out to define a catalog of 12,082 unique transcripts. A strong AT bias was found, indicating a compositional shift between Drosophila melanogaster and A. pisum. An in silico profiling analysis characterized 135 transcripts specific to pea-aphid tissues (relating to bacteriocytes and parthenogenetic embryos). This project is the first to address the genetics of the Hemiptera and of a hemimetabolous insect.

0106 biological sciencesGenetics0303 health sciencesAphidExpressed sequence tagbiologyIn silicomedia_common.quotation_subjectfungifood and beveragesInsectbiochemical phenomena metabolism and nutritionbiology.organism_classification01 natural sciencesHemipteraPisumAcyrthosiphon pisum010602 entomology03 medical and health sciencesDrosophila melanogaster030304 developmental biologymedia_commonGenome Biology
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Principaux bio-agresseurs rencontrés ces dernières années (bactériose, pucerons, viroses et bruches)

2022

National audience

[SDV] Life Sciences [q-bio][SDV]Life Sciences [q-bio]
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