Soils as natural filters for GHG: an imbalance between the expected CH4 fluxes and the direct measurements

The final composition of the atmosphere results from several processes and exchanges between all the Earth’s spheres. Some of these are widely known and others, such as the methane degassing from hydrothermal areas, are still understudied. Methane plays a key role in climate change being an efficient greenhouse gas. Although it would be crucial, the total CH4 output from geogenic sources is still not well defined; limitations in CH4 output estimations are due to many factors concerning a scarce dataset availability, difficulty in direct measurements, and interaction with methane-consuming microbiota in the soil. Often, the CH4 flux estimation was obtained indirectly, e.g. cross-correlating …

Gaseous emissions from geothermal and volcanic areas: focus on methane and methanotrophs

Ogni anno, 22 Tg di CH4 vengono rilasciati in atmosfera da numerose sorgenti sia naturali che antropiche. Il metano riveste un ruolo molto importante nella chimica dell’atmosfera terrestre e nel bilancio dell’energia radiante assorbita, essendo il secondo gas serra più potente dopo la CO2. Le aree vulcaniche e geotermali contribuiscono al flusso di metano in atmosfera, essendo vaste aree di degassamento. Studi preliminari hanno stimato che le emissioni globali di metano dai sistemi geotermali e vulcanici europei sono nel range di 4-16 kt a-1. Questa stima è stata ottenuta indirettamente dai dati delle emissioni di CO2 o H2O e dal rapporto del flusso CO2/CH4 oppure H2O/CH4 misurati nelle pri…

Methanotrophic activity and bacterial diversity in volcanic-geothermal soils at Pantelleria island (Italy)

Abstract. Volcanic and geothermal systems emit endogenous gases by widespread degassing from soils, including CH4, a greenhouse gas twenty-five times as potent as CO2. Recently, it has been demonstrated that volcanic/geothermal soils are source of methane, but also sites of methanotrophic activity. Methanotrophs are able to consume 10–40 Tg of CH4 a−1 and to trap more than 50% of the methane degassing through the soils. We report on methane microbial oxidation in the geothermally most active site of Pantelleria island (Italy), Favara Grande, whose total methane emission was previously estimated in about 2.5 t a−1. Laboratory incubation experiments with three top-soil samples from Favara Gra…

The importance of methanotrophic activity in geothermal soils of Pantelleria island (Italy)

Methane is a major contributor to the greenhouse effect, its atmospheric concentration being more than doubled since the XIX century. Every year 22 Tg of methane are released to the atmosphere from several natural and anthropogenic sources. Natural sources include geothermal/volcanic areas but the estimation of the total methane emission from these areas is currently not well defined since the balance between emission through degassing and microbial oxidation within the soils is not well known. Microbial oxidation in soils contributes globally for about 3-9% to the removal of methane from the atmosphere and recent studies evidenced methanotrophic activity also in soils of volcanic/geotherma…

Gas geochemistry and CO2 output estimation at the island of Milos, Greece

Abstract Twenty gas samples have been collected from the natural gas manifestations of Milos Island, the majority of which is found underwater along its coast. Furthermore, three anomalous degassing fumarolic areas (Kalamos, Paleochori and Adamas) have been recognized on-land. Almost all the gases are CO2-dominated with CO2 ranging from 88 to 99% vol for the samples taken underwater, while the on-land manifestations show a wider range (15–98%) due to air contamination. Methane reaches up to 1.0% vol, H2 up to 3.2% vol and H2S up to 3.5% vol indicating a hydrothermal origin of the gases. The isotope composition of He points out to mantle contributions up to 45%, while the C-isotope compositi…

Profiling microbial communities in hyperalkaline waters of the Kizildag ophiolite complex (Turkey).

It has recently been hypothesized that life on Earth could have been originated in hyperalkaline waters related to serpentinization of ophiolitic rocks, despite their extreme conditions (high pH and very low levels of nutrients). Five hyperalkaline springs of the Kizildag ophiolite complex (Turkey) were characterized. The dominant gases are either H2, CH4 or N2 . Bacterial diversity, analysed by RISA (Ribosomal Intergenic Spacer Analysis) revealed different profles for each spring. Sequencing of excised DNA bands allowed to identify the presence of Bacillus, Ralstonia, Pseudoalteromonas., Ureibacillus, Alicycliphilus, Anaerococcus. 16S ribosomal DNA sequencing by Illumina is in progress. Th…

Methylacidimicrobium thermophilum AP8, a Novel Methane- and Hydrogen-Oxidizing Bacterium Isolated From Volcanic Soil on Pantelleria Island, Italy

The Favara Grande is a geothermal area located on Pantelleria Island, Italy. The area is characterized high temperatures in the top layer of the soil (60°C), low pH (3–5) and hydrothermal gas emissions mainly composed of carbon dioxide (CO2), methane (CH4), and hydrogen (H2). These geothermal features may provide a suitable niche for the growth of chemolithotrophic thermoacidophiles, including the lanthanide-dependent methanotrophs of the phylum Verrucomicrobia. In this study, we started enrichment cultures inoculated with soil of the Favara Grande at 50 and 60°C with CH4 as energy source and medium containing sufficient lanthanides at pH 3 and 5. From these cultures, a verrucomicrobial met…

Geochemical survey of Levante Bay, Vulcano Island (Italy), a natural laboratory for the study of ocean acidification

Abstract Shallow submarine gas vents in Levante Bay, Vulcano Island (Italy), emit around 3.6t CO2 per day providing a natural laboratory for the study of biogeochemical processes related to seabed CO2 leaks and ocean acidification. The main physico-chemical parameters (T, pH and Eh) were measured at more than 70 stations with 40 seawater samples were collected for chemical analyses. The main gas vent area had high concentrations of dissolved hydrothermal gases, low pH and negative redox values all of which returned to normal seawater values at distances of about 400 m from the main vents. Much of the bay around the vents is corrosive to calcium carbonate; the north shore has a gradient in s…

Seawater Trace Metals in acidified condition: an accumulation study in the blue mussel Mytilus galloprovincialis off Vulcano Island submarine vents (Italy)

Degassing and Cycling of Mercury at Nisyros Volcano (Greece)

Nisyros Island (Greece) is an active volcano hosting a high-enthalpy geothermal system. During June 2013, an extensive survey on Hg concentrations in different matrices (fumarolic fluids, atmosphere, soils, and plants) was carried out at the Lakki Plain, an intracaldera area affected by widespread soil and fumarolic degassing. Concentrations of gaseous elemental mercury (GEM), together with H2S and CO2, were simultaneously measured in both the fumarolic emissions and the atmosphere around them. At the same time, 130 samples of top soils and 31 samples of plants (Cistus creticus and salvifolius and Erica arborea and manipuliflora) were collected for Hg analysis. Mercury concentrations in fum…

High diversity of methanotrophic bacteria in a geothermal site: Pantelleria island

Hydrogen and Carbon Monoxide-Utilizing Kyrpidia spormannii Species From Pantelleria Island, Italy

Volcanic and geothermal areas are hot and often acidic environments that emit geothermal gasses, including H2, CO and CO2. Geothermal gasses mix with air, creating conditions where thermoacidophilic aerobic H2- and CO-oxidizing microorganisms could thrive. Here, we describe the isolation of two Kyrpidia spormannii strains, which can grow autotrophically by oxidizing H2 and CO with oxygen. These strains, FAVT5 and COOX1, were isolated from the geothermal soils of the Favara Grande on Pantelleria Island, Italy. Extended physiology studies were performed with K. spormannii FAVT5, and showed that this strain grows optimally at 55°C and pH 5.0. The highest growth rate is obtained using H2 as ene…

So close, so different: geothermal flux shapes divergent soil microbial communities at neighbouring sites

This study is focused on the (micro)biogeochemical features of two close geothermal sites (FAV1 and FAV2), both selected at the main exhalative area of Pantelleria Island, Italy. A previous biogeochemical survey revealed high CH4 consumption and the presence of a diverse community of methanotrophs at FAV2 site, whereas the close site FAV1 was apparently devoid of methanotrophs and recorded no CH4 consumption. Next-Generation Sequencing (NGS) techniques were applied to describe the bacterial and archaeal communities which have been linked to the physicochemical conditions and the geothermal sources of energy available at the two sites. Both sites are dominated by Bacteria and host a negligib…

Hydrothermal methane fluxes from the soil at Lakki plain (Nisyros Island, Greece)

Μετρήσεις φυσικής ροής μεθανίου και διοξειδίου του άνθρακα από το έδαφος πραγματοποιήθηκαν με τη μέθοδο συγκέντρωσης θαλάμου στην περιοχή Λακκί της Καλδέρας της Νισύρου, καλύπτοντας έκταση περίπου 0.06 km2 συμπεριλαμβάνοντας τις περιοχές Καμινάκια, Στέφανος και Αλέξανδρο όπου παρατηρείται έντονη ατμιδική δραστηριότητας. Οι τιμές ροής που μετρήθηκαν σε 77 σημεία κυμαίνονται από –3.4 μέχρι 1420 mg m-2 d-1 για το CH4 και από 0.1, μέχρι 383 g m-2 d-1 για το CO2. Στις τρεις ατμιδικές περιοχές παρουσιάζονται διαφορετικοί ρυθμοί διαφυγής μεθανίου, ιδίως στα Καμινάκια όπου προέκυψαν οι μεγαλύτερες τιμές ροής. Η εξερχόμενη ποσότητα μεθανίου εκτιμάται σε 0.01 t a-1 από μια έκταση περίπου 2500 m2 στον…

Estimation of the geogenic carbon degassing of Greece

Abstract Greece belongs to the most geodynamically active regions of the world and as such it has to be considered an area of intense geogenic degassing. Here we review all the papers already published in the scientific literature on both the geochemistry of gas manifestations and the CO2 and CH4 release, in an attempt to obtain the first nationwide inventory of the natural output of these carbon gases in Greece. The best studied and most exhaling area is the South Aegean Active Volcanic Arc (SAAVA), which releases more than 1.3 × 105 tons of CO2 per year. Continental Greece, on the contrary, is much less studied but may release CO2 in the same order of magnitude in its eastern-central and …

Chemical characterisation of the gases released at Gyali Island, Dodecanese, Greece and preliminary estimation of the CO2 output

Greece belongs to the most geodynamically active regions of the world and as such, it has to be considered an area of intense geogenic degassing. In terms of carbon, the territory is characterized by the high hydrothermal and volcanic activity of the South Aegean Active Volcanic Arc (SAAVA), and by widespread geological seeps of buried carbon dioxide and methane. In the present work, we investigate the island of Gyali located in the volcanic system Kos-Gyali-Nisyros. Nine gas samples have been collected on the island of Gyali in areas found both on land, in a small lake (∼2000 m2) along its beach, and in the sea close to the shore at shallow depths (<20 m). Results show that CO2 is the p…

Exploring methanotrophic activity in geothermal soils from Pantelleria Island (Italy)

Methane is released to the atmosphere by a wide number of natural (geological and biological) and anthropogenic sources, and is the second most important greenhouse gas after CO2. Microbial oxidation in soils by methanotrophic bacteria contributes to the removal of CH4 from the atmosphere and methanotrophic activity was also detected in volcanic/geothermal areas where degassing of endogenous gases occurs. Our aim is to describe the methanotrophs at the main exhalative area of Le Favare site at Pantelleria Island, where high CH4 consumption (up to 950 ng/g/ per h) was measured. Total soil bacterial diversity was analysed by TTGE of amplified 16S rRNA genes and the diversity of proteobacteria…

Degassing at the Volcanic/Geothermal System of Kos (Greece): Geochemical Characterization of the Released Gases and CO2 Output Estimation

Forty-five gas samples have been collected from natural gas manifestations at the island of Kos—the majority of which are found underwater along the southern coast of the island. On land, two anomalous degassing areas have been recognized. These areas are mainly characterized by the lack of vegetation and after long dry periods by the presence of sulfate salt efflorescence. Carbon dioxide is the prevailing gas species (ranging from 88 to 99%), while minor amounts of N2 (up to 7.5%) and CH4 (up to 2.1%) are also present. Significant contents of H2 (up to 0.2%) and H2S (up to 0.3%) are found in the on-land manifestations. Only one of the underwater manifestations is generally rich in N2 (up t…

The impact of methanotrophic activity on methane emissions through the soils of geothermal areas

Methane plays an important role in the Earth’s atmospheric chemistry and radiative balance being the most important greenhouse gas after carbon dioxide. It has recently been established that geogenic gases contribute significantly to the natural CH4 flux to the atmosphere (Etiope et al., 2008). Volcanic/geothermal areas contribute to this flux, being the site of widespread diffuse degassing of endogenous gases (Chiodini et al., 2005). In such an environment soils are a source rather than a sink for atmospheric CH4 (Cardellini et al., 2003; Castaldi and Tedesco, 2005; D’Alessandro et al., 2009; 2011; 2013). Due to the fact that methane soil flux measurements are laboratory intensive, very fe…

High diversity of methanotrophic bacteria in geothermal soils affected by high methane fluxes

Volcanic and geothermal systems emit endogenous gases by widespread degassing from soils, including CH4, a greenhouse gas 25 times as potent as CO2. Recently, it has been demonstrated that volcanic/geothermal soils act as source, but also as biological filter for methane release to the atmosphere. For long time, volcanic/geothermal soils has been considered inhospitable for methanotrophic microorganisms, but new extremophile methanotrophs belonging to Verrucomicrobia were identified in three different areas (Pozzuoli, Italy; Hell’s Gate, New Zealand; Kamchatka, Russia), explaining anomalous behaviours in methane leakages of several geothermal/volcanic sites. Our aim was to increase the know…

Methane efflux from the soil and methanotrophic activity in volcanic-geothermal areas: Examples from Italy and Greece

MOBILITY OF MERCURY IN THE VOLCANIC/GEOTHERMAL AREA OF NISYROS (GREECE)

Το καλοκαίρι του 2013, προσδιορίστηκαν οι συγκεντρώσεις υδραργύρου στο έδαφος και τον αέρα του ενεργού ηφαιστείου της Νισύρου (Ελλάδα), το οποίο ανήκει στο ενεργό ηφαιστειακό τόξο του νοτίου Αιγαίου. 102 δείγματα εδάφους συλλέχθηκαν και 2119 αναλύθηκαν για υδράργυρο με τη χρήση ψυχρού ατμού ατομικής απορρόφησης αναλυτή, σύμφωνα με τη μέθοδο ΕΡΑ 7473. Ταυτόχρονα, στα ίδια σημεία πραγματοποιήθηκαν συγκεντρώσεις υδραργύρου στον αέρα, με φορητό φασματοφωτόμετρο (Lumex RA- 915M). Οι τιμές των εδαφικών συγκεντρώσεων υδραργύρου κυμαίνονται από 0.023 έως 13.7 mg/g. Οι συγκεντρώσεις υδραργύρου στον αέρα έδειξαν υψηλότερες τιμές υποβάθρου στην περιοχή Λακκί της καλδέρας, μεταξύ 21 και 36 ng/m3 και μέ…

Geophysical contribution to the reconstruction of the hydrological model of "Barcellona-Milazzo plain" groundwater body, northen Sicily

The “Barcellona-Milazzo plain” groundwater body in the northen Sicily, was analysed in detail, through numerous geophysical measurements that were integrated with stratigraphic data in order to reconstruct the hydrological model. The “Barcellona-Milazzo plain” (BMP) groundwater body has been identified within the coastal sector between the village of Oliveri, to the west, and Capo Rasocolmo, to the east. It also includes several rivers that rise further south in correspondence with the Peloritani ridge and flow into the wide Barcellona-Milazzo alluvial plain. On the basis of several geophysical and geological data analysis and interpretation have been used to reconstruct the composition and…

Microbiological evidences of methanotriphic activity in the soils of the geothermal area of Pantelleria island (Italy)

Methane plays an important role in the Earth’s atmospheric chemistry and radiative balance being the second most important greenhouse gas after carbon dioxide. Methane is released to the atmosphere by a wide number of sources, both natural and anthropogenic, with the latter being twice as large as the former. It has recently been established that significant amounts of geological methane, produced within the Earth’s crust, are currently released naturally into the atmosphere. Active or recent volcanic/geothermal areas represent one of these sources of geological methane. Microbial oxidation in soils contributes for about 3-9% to the total removal of CH4 from the atmosphere. Recent studies e…

Methanotrophic activity and diversity of methanotrophs in volcanic geothermal soils at Pantelleria (Italy)

Volcanic and geothermal systems emit endogenous gases by widespread degassing from soils, including CH4, a greenhouse gas twenty-five times as potent as CO2. Recently, it has been demonstrated that volcanic or geothermal soils are not only a source of methane, but are also sites of methanotrophic activity. Methanotrophs are able to consume 10–40 Tg of CH4 a−1 and to trap more than 50% of the methane degassing through the soils. We report on methane microbial oxidation in the geothermally most active site of Pantelleria (Italy), Favara Grande, whose total methane emission was previously estimated at about 2.5 Mg a−1 (t a−1). Laboratory incubation experiments with three top-soil samples from …

Total (fumarolic + diffuse soil) CO2 output from Furnas volcano

Furnas volcano, in São Miguel island (Azores), being the surface expression of rising hydrothermal steam, is the site of intense carbon dioxide (CO2) release by diffuse degassing and fumaroles. While the diffusive CO2 output has long (since the early 1990s) been characterized by soil CO2 surveys, no information is presently available on the fumarolic CO2 output. Here, we performed (in August 2014) a study in which soil CO2 degassing survey was combined for the first time with the measurement of the fumarolic CO2 flux. The results were achieved by using a GasFinder 2.0 tunable diode laser. Our measurements were performed in two degassing sites at Furnas volcano (Furnas Lake and Furnas Villag…

Investigation of the methanotrophic activity in the soils of a geothermal site of Pantelleria Island (Italy)

Greenhouse gas as a nutrient: methanotrophic activity in soils of hydrothermal systems

Methane is the most abundant hydrocarbon in the atmosphere and a significant contributor to the radiative forcing with a global warming potential about 21 times that of CO2. Methane is released to the atmosphere by a wide number of sources, both natural and anthropogenic, with the latter being twice as large as the former. Significant amounts of geological methane, produced within the Earth’s crust (e.g. volcanic/geothermal areas), are currently released into the atmosphere (48 Tg CH4/y). Microbial oxidation in soils by methanotrophic bacteria contributes to the removal of CH4 from the atmosphere for about 3-9%. Methanotrophs belong to the Gamma- and Alpha-proteobacteria and to the recently…

Another kind of “volcanic risk”: the acidification of sea-water. Vulcano Island (Italy) a natural laboratory for ocean acidification studies

Geothermal Gases Shape the Microbial Community of the Volcanic Soil of Pantelleria, Italy

The Favara Grande nature reserve on the volcanic island of Pantelleria (Italy) is known for its geothermal gas emissions and high soil temperatures. These volcanic soil ecosystems represent “hot spots” of greenhouse gas emissions. The unique community might be shaped by the hostile conditions in the ecosystem, and it is involved in the cycling of elements such as carbon, hydrogen, sulfur, and nitrogen. Our metagenome study revealed that most of the microorganisms in this extreme environment are only distantly related to cultivated bacteria. The results obtained profoundly increased the understanding of these natural hot spots of greenhouse gas production/degradation and will help to enrich …

Metagenome Assembled Genome of a Novel Verrucomicrobial Methanotroph From Pantelleria Island.

Verrucomicrobial methanotrophs are a group of aerobic bacteria isolated from volcanic environments. They are acidophiles, characterized by the presence of a particulate methane monooxygenase (pMMO) and a XoxF-type methanol dehydrogenase (MDH). Metagenomic analysis of DNA extracted from the soil of Favara Grande, a geothermal area on Pantelleria Island, Italy, revealed the presence of two verrucomicrobial Metagenome Assembled Genomes (MAGs). One of these MAGs did not phylogenetically classify within any existing genus. After extensive analysis of the MAG, we propose the name of “Candidatus Methylacidithermus pantelleriae” PQ17 gen. nov. sp. nov. The MAG consisted of 2,466,655 bp, 71 contigs …

Microbial communities and novel taxa in « Continental Smokers » of northern Greece

Analogously to the ocean-bottom black/white smokers, “continental smokers” have recently been defined as sites of mantle degassing through continental crust. The goal of this research, carried out within the Deep Carbon Observatory Community, is to investigate the role of deeplysourced fluids in niche ecosystem differentiation in European continental smokers. A 16S rRNA gene survey of microbial communities was carried out on 11 geothermal manifestations of northern Greece, all showing a distinct contribution of mantle fluids (R/Ra up to 1.2) that allow to classify them as continental smokers. The selected sites cover a wide range of temperatures (15-77 °C), pH (6.11-8.46), Eh (-289 – 40 mV)…

Microbiology meets geochemistry: geothermal flux shapes different microbial communities at the same exhalative area

Volcanic/geothermal areas are sites of complex interactions between geosphere and biosphere. Pantelleria island (Southern Mediterranean Sea) hosts a high enthalpy geothermal system characterized by high CH4 and low H2S fluxes. Two sites, FAV1 and FAV2, located a few meters apart at the main exhalative area of the island (Favara Grande), recorded similar physical conditions (soil temperature 60°C, soil gas composition enriched in CH4, H2 and CO2). However, while high methanotrophic activity (59.2 nmol g-1 h-1) and high diversity of methanotrophs was detected at FAV2, FAV1 was not active and appeared deprived of methanotrophs (1). Our aim was to investigate the main factors influencing methan…