0000000000040693

AUTHOR

Irina Bundeleva

showing 6 related works from this author

Organic matrices in metazoan calcium carbonate skeletons: composition, functions, evolution.

2016

9 pages; International audience; Calcium carbonate skeletal tissues in metazoans comprise a small quantity of occluded organic macromolecules, mostly proteins and polysaccharides that constitute the skeletal matrix. Because its functions in modulating the biomineralization process are well known, the skeletal matrix has been extensively studied, successively via classical biochemical approaches, via molecular biology and, in recent years, via transcriptomics and proteomics. The optimistic view that the deposition of calcium carbonate minerals requires a limited number of macromolecules has been challenged, in the last decade, by high-throughput approaches. Such approaches have made possible…

0301 basic medicineBiomineralizationProteomicsComputational biologyBiologyProteomicsSkeletal tissueCalcium Carbonatebiomineralization ; metazoan ; calcification ; skeleton ; skeletal matrix ; proteomicsCalcificationEvolution Molecular03 medical and health scienceschemistry.chemical_compoundMatrix (mathematics)Calcification PhysiologicMetazoanStructural Biology[SDV.IB.BIO]Life Sciences [q-bio]/Bioengineering/BiomaterialsSkeleton[ SDV.IB.BIO ] Life Sciences [q-bio]/Bioengineering/BiomaterialsRapid identificationSkeletal matrix030104 developmental biologyCalcium carbonatechemistryBiochemistryBiomineralization
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The shell of the invasive bivalve species Dreissena polymorpha: biochemical, elemental and textural Investigations.

2016

28 pages; International audience; The zebra mussel Dreissena polymorpha is a well-established invasive model organism. Although extensively used in environmental sciences, virtually nothing is known of the molecular process of its shell calcification. By describing the microstructure, geochemistry and biochemistry/proteomics of the shell, the present study aims at promoting this species as a model organism in biomineralization studies, in order to establish a bridge with ecotoxicology, while sketching evolutionary conclusions. The shell of D. polymorpha exhibits the classical crossed-lamellar/complex crossed lamellar combination found in several heterodont bivalves, in addition to an extern…

0301 basic medicinelcsh:MedicineInvasive Species010501 environmental sciencesProteomicsEcotoxicology01 natural sciencesBiochemistrychemistry.chemical_compoundDatabase and Informatics MethodsMaterials PhysicsLectinsMusselslcsh:ScienceMicrostructureGel ElectrophoresisStainingMineralsMultidisciplinarybiologyOrganic CompoundsPhysicsMonosaccharidesBiological EvolutionEuropeChemistry[ SDV.BBM.GTP ] Life Sciences [q-bio]/Biochemistry Molecular Biology/Genomics [q-bio.GN]Physical SciencesFranceSequence AnalysisResearch ArticleSilver StainingBivalvesMaterials ScienceShell (structure)CarbohydratesSequence DatabasesElectrophoretic StainingResearch and Analysis MethodsDreissenaDreissenaCoomassie Blue staining03 medical and health sciencesElectrophoretic TechniquesSpecies ColonizationAnimal Shells[SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry Molecular Biology/Genomics [q-bio.GN]Botany[SDV.BBM] Life Sciences [q-bio]/Biochemistry Molecular BiologyEcotoxicologyAnimals[SDV.BBM]Life Sciences [q-bio]/Biochemistry Molecular Biology14. Life underwaterShell calcificationMolecular Biology TechniquesSequencing Techniques[SDV.IB.BIO]Life Sciences [q-bio]/Bioengineering/BiomaterialsMolecular Biology[ SDV.BBM ] Life Sciences [q-bio]/Biochemistry Molecular Biology0105 earth and related environmental scienceslcsh:ROrganic ChemistryEcology and Environmental SciencesOrganismsChemical CompoundsBiology and Life SciencesProteinsMolluscs[ SDV.IB.BIO ] Life Sciences [q-bio]/Bioengineering/Biomaterialsbiology.organism_classificationInvertebrates030104 developmental biologyCalcium carbonateBiological DatabaseschemistrySpecimen Preparation and TreatmentZebra mussellcsh:QIntroduced SpeciesBiomineralization
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Skeletal organic matrices in molluscs: origin, evolution, diagenesis

2017

8 pages; International audience; The mollusc shell comprises a small amount of organic macromolecules, mostly proteins and polysaccharides, which, all together, constitute the skeletal organic matrix (SOM). In the recent years, the study of the SOM of about two dozens of mollusc species via transcriptomics and/or proteomics has led to the identification of hundreds of shell-associated proteins. This rapidly growing set of data allows several comparisons, shedding light on similarities and differences at the primary structure level and on some peculiar evolutionary mechanisms that may have affected SOM proteins. In addition, it constitutes a prerequisite for investigating the SOM repertoires…

0301 basic medicineProteomicsSubfossilProteinBiologyFunctional domainsProteomicsbiology.organism_classificationFossilizationSequencesTridacnaDiagenesisDiagenesis[SDV.BBM.BC]Life Sciences [q-bio]/Biochemistry Molecular Biology/Biomolecules [q-bio.BM]03 medical and health sciences030104 developmental biology0302 clinical medicineOrder (biology)Evolutionary biologyMollusc shellShellIdentification (biology)14. Life underwaterMollusc030217 neurology & neurosurgery
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Metazoan calcium carbonate biomineralizations: macroevolutionary trends – challenges for the coming decade

2014

AbstractCalcium carbonate-based biominerals, also referred as biocalcifications, are the most abundant biogenic mineralized products at the surface of the Earth. In this paper, we summarize general concepts on biocalcifications and we sketch macro-evolutionary trends throughout the history of the Earth, from Archean to Phanerozoic times. Then, we expose five fundamental issues that represent key-challenges in biocalcification researches for the coming decade: the first one concerns the comprehension of the micro- and nano-structure of calcium carbonate biominerals from a mineral viewpoint, while the second one deals with the understanding of the dynamic process of their fabrication. The thi…

Paleontologychemistry.chemical_compoundCalcium carbonatechemistryArcheanEarth scienceGeologyOcean acidificationGeologyBiomineralizationBulletin de la Société Géologique de France
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Oligo-Miocene lacustrine microbial and metazoan buildups from the Limagne Basin (French Massif Central)

2018

The Limagne Basin (French Massif Central) is an extensive continental lacustrine system accommodating microbial and metazoan buildups from Chattian to Aquitanian age. A description of these buildups and their associated biotic components in Grand Gandaillat and Crechy quarries provides insights into their spatio-temporal distribution patterns. Flats, cauliflowers, domes, cones and coalescent columnar morphologies have been identified with a main laminated mesofabric and laminated, columnar, filamentous and caddisfly-coated microfabrics. Two low-gradient margin models emerged based on the changes in the distribution, morphology and size of the microbial and metazoan-rich deposits through tim…

010504 meteorology & atmospheric sciencesGeochemistryCarbonatesVolcanismEcological successionStructural basin010502 geochemistry & geophysicsOceanography01 natural sciencesVolcanismMarlCycle ClimateEcology Evolution Behavior and Systematics0105 earth and related environmental sciencesEarth-Surface Processesgeographygeography.geographical_feature_categoryPaleontologyMassif15. Life on landTectonicTectonicsVolcanoSedimentary rockLacustrine/palustrine[SDU.STU.PG]Sciences of the Universe [physics]/Earth Sciences/PaleontologyGeology
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Experimental modeling of bacterially-induced Ca carbonate precipitation: new insights on possible mechanisms.

2015

The contribution of microorganisms, particularly bacteria, in carbonate mineral formation, the main natural processes controlling CO2 level in the atmosphere, has played an important role since the Archean Eon. In this study we review our recent experimental work on CaCO3 precipitation induced by two anoxygenic phototrophic bacteria (APB), Rhodovulum steppense A-20sT and Rhodovulum sp. S-17-65, and by cyanobacteria Gloeocapsa sp. f-6gl. These bacteria are representatives of two important groups of photosynthetic organisms present at the Earth surface both in the past and at the present times. The mechanisms of organomineralization deriving from APB and cyanobacteria activities are drastical…

CyanobacteriabiologyMechanical EngineeringMicroorganismbiology.organism_classificationPhotosynthesis[ SDV.IB.BIO ] Life Sciences [q-bio]/Bioengineering/BiomaterialsAnoxygenic photosynthesisGloeocapsa[SDV.IB.BIO] Life Sciences [q-bio]/Bioengineering/Biomaterialschemistry.chemical_compoundExtracellular polymeric substancechemistryMechanics of MaterialsEnvironmental chemistryCarbonateGeneral Materials Science[SDV.IB.BIO]Life Sciences [q-bio]/Bioengineering/BiomaterialsComputingMilieux_MISCELLANEOUSBiomineralization
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