0000000000042682

AUTHOR

Sofie Midgley

showing 5 related works from this author

A European multicentre evaluation of detection and typing methods for human enteroviruses and parechoviruses using RNA transcripts

2020

Polymerase chain reaction (PCR) detection has become the gold standard for diagnosis and typing of enterovirus (EV) and human parechovirus (HPeV) infections. Its effectiveness depends critically on using the appropriate sample types and high assay sensitivity as viral loads in cerebrospinal fluid samples from meningitis and sepsis clinical presentation can be extremely low. This study evaluated the sensitivity and specificity of currently used commercial and in‐house diagnostic and typing assays. Accurately quantified RNA transcript controls were distributed to 27 diagnostic and 12 reference laboratories in 17 European countries for blinded testing. Transcripts represented the four human EV…

EchovirusGene DosageDIVERSITYCHILDRENmedicine.disease_causelaw.invention0302 clinical medicinelawEPIDEMIOLOGY030212 general & internal medicineResearch ArticlesComputingMilieux_MISCELLANEOUSPolymerase chain reaction*enterovirus*enterovirus A7111832 Microbiology and virologyenterovirusRNA transcripts[SDE.IE]Environmental Sciences/Environmental EngineeringHuman parechovirusCLINICAL-SAMPLESASSOCIATIONMeningitis Viral3. Good healthEuropeenterovirus A71PCRInfectious Diseases*RNA transcriptsINFECTIONS[SDV.MP.VIR]Life Sciences [q-bio]/Microbiology and Parasitology/Virology*PCRRNA Viral030211 gastroenterology & hepatologyLife Sciences & BiomedicineViral loadResearch Article[SDE.MCG]Environmental Sciences/Global ChangesBiologyReal-Time Polymerase Chain ReactionSensitivity and SpecificityPANEL03 medical and health sciencesCEREBROSPINAL-FLUIDVirologyEnterovirus InfectionsmedicineHumansRHINOVIRUSTypingparechovirusScience & TechnologyPicornaviridae InfectionsReproducibility of ResultsGold standard (test)biology.organism_classification[SDE.ES]Environmental Sciences/Environmental and SocietyVirology*parechovirusMolecular TypingParechovirusEnterovirusReagent Kits Diagnostic[SDE.BE]Environmental Sciences/Biodiversity and EcologyJournal of Medical Virology
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Rotavirus surveillance in europe, 2005-2008: web-enabled reporting and real-time analysis of genotyping and epidemiological data.

2009

International audience; BACKGROUND: The first European rotavirus surveillance network, EuroRotaNet, comprising 16 laboratories in 15 European countries, has been established. METHODS: Fecal samples from gastroenteritis cases positive for group A rotavirus antigen were collected from multiple European countries from 2005 to mid-2008 and were subjected to G and P genotyping. Epidemiological data collected included age, sex, geographical location, setting, dates of onset and sample collection, and clinical symptoms. RESULTS: A total of 8879 rotavirus-positive samples were characterized: 2129 cases were from the 2005-2006 season, 4030 from the 2006-2007 season, and 2720 from the ongoing 2007-20…

Rotavirusmedicine.medical_specialtyTime FactorsGenotypeMESH : RotavirusMESH : EuropePrevalenceReoviridaeMESH : GenotypeMESH : Child Preschoolmedicine.disease_causeMESH : Infant Newborn[ SDV.MP.VIR ] Life Sciences [q-bio]/Microbiology and Parasitology/VirologyRotavirus Infections03 medical and health sciencesRotavirusEpidemiologymedicineMESH : Rotavirus InfectionsImmunology and AllergyHumansGenotyping030304 developmental biology0303 health sciencesInternetbiologyMESH : Seasons030306 microbiologyIncidence (epidemiology)MESH : HumansInfant NewbornInfantMESH : Infantbiology.organism_classificationVirology3. Good healthVaccinationEuropeInfectious DiseasesChild PreschoolSample collectionSeasonsMESH : InternetDemographyMESH : Time Factors
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Diversity and zoonotic potential of rotaviruses in swine and cattle across Europe.

2011

Group A rotaviruses can infect both humans and animals. Individual rotavirus strains can occasionally cross species barriers and might hereby contribute to the emergence of new genotypes in heterologous hosts. The incidence and impact of zoonotic rotavirus are not well defined, and one reason for this is a lack of data about strains circulating in suspected reservoir animal hosts. In this study we report the incidence, genetic diversity, and molecular epidemiology of rotaviruses detected in domestic cattle and swine in 6 European countries. From 2003 to 2007, 1101 and more than 2000 faecal specimens were collected from swine and cattle, both healthy and diarrhoeic, and tested for rotaviruse…

RotavirusGenotypeSwinevirusesSus scrofaCattle DiseasesCattle DiseasesBiologymedicine.disease_causeMicrobiologyRotavirus InfectionsFecesfluids and secretionsRotavirusZoonosesGenotypeGenetic variationmedicineAnimalsAntigens ViralPhylogenySwine DiseasesGenetic diversityMolecular EpidemiologyGeneral VeterinaryPhylogenetic treeMolecular epidemiologybusiness.industryIncidencevirus diseasesGenetic VariationGeneral MedicineVirologyEuropeLivestockCattlebusinessVeterinary microbiology
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Recommendations for enterovirus diagnostics and characterisation within and beyond Europe

2018

Enteroviruses (EV) can cause severe neurological and respiratory infections, and occasionally lead to devastating outbreaks as previously demonstrated with EV-A71 and EV-D68 in Europe. However, these infections are still often underdiagnosed and EV typing data is not currently collected at European level. In order to improve EV diagnostics, collate data on severe EV infections and monitor the circulation of EV types, we have established European non-polio enterovirus network (ENPEN). First task of this cross-border network has been to ensure prompt and adequate diagnosis of these infections in Europe, and hence we present recommendations for non-polio EV detection and typing based on the co…

0301 basic medicineEuropean levelRECOMBINATIONNeurological infectionReviewMOUTH-DISEASEmedicine.disease_causeEMERGENCEFecesCentral Nervous System Infections[SDV.MHEP.MI]Life Sciences [q-bio]/Human health and pathology/Infectious diseasesMedicineRespiratory Tract InfectionsCLINICAL SPECIMENSDiagnosticsDiagnostic Techniques and ProceduresComputingMilieux_MISCELLANEOUSEnterovirusEnterovirus D Human3. Good healthEuropeDetectionPCRInfectious DiseasesINFECTIONS[SDV.MHEP.MI] Life Sciences [q-bio]/Human health and pathology/Infectious diseasesRNA ViralRNA INTERNAL CONTROLVp1 capsid proteinVirus isolation[SDV.MP.PRO] Life Sciences [q-bio]/Microbiology and Parasitology/Protistology[SDV.MP.PRO]Life Sciences [q-bio]/Microbiology and Parasitology/ProtistologyVirus03 medical and health sciencesVirologySURVEILLANCEEnterovirus InfectionsJournal ArticleRESPIRATORY VIRUSESddc:610TypingDisease burdenbusiness.industryOutbreakAMPLIFICATIONVirology[SDV.MP.BAC]Life Sciences [q-bio]/Microbiology and Parasitology/BacteriologyEnterovirus A Human030104 developmental biologyEnterovirusCapsid Proteins[SDV.MP.BAC] Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology610 Medizin und GesundheitEV typingbusinessEuropean non-polio enterovirus network (ENPEN)Journal of Clinical Virology
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Rotavirus genotypes co-circulating in Europe between 2006 and 2009 as determined by EuroRotaNet, a pan-European collaborative strain surveillance net…

2011

SUMMARYEuroRotaNet, a laboratory network, was established in order to determine the diversity of co-circulating rotavirus strains in Europe over three or more rotavirus seasons from 2006/2007 and currently includes 16 countries. This report highlights the tremendous diversity of rotavirus strains co-circulating in the European population during three years of surveillance since 2006/2007 and points to the possible origins of these strains including genetic reassortment and interspecies transmission. Furthermore, the ability of the network to identify strains circulating with an incidence of ⩾1% allowed the identification of possible emerging strains such as G8 and G12 since the beginning of…

AdultMaleRotavirusAdolescentGenotypeEpidemiologyInternational CooperationReassortmentReoviridaemedicine.disease_causeRotavirus InfectionsYoung Adult03 medical and health sciencesSex FactorsPan european[SDV.MHEP.MI]Life Sciences [q-bio]/Human health and pathology/Infectious diseasesRotavirusGenotypemedicineHumansChildAged030304 developmental biologyAged 80 and overMolecular Epidemiology0303 health sciencesMolecular epidemiologybiology030306 microbiologyStrain (biology)Incidence (epidemiology)Age FactorsRotavirus VaccinesInfantMiddle Agedbiology.organism_classificationVirology3. Good healthEuropeInfectious DiseasesChild PreschoolPopulation Surveillance[SDV.MP.VIR]Life Sciences [q-bio]/Microbiology and Parasitology/VirologyFemaleSeasonsEpidemiology and Infection
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