New Tree-Ring Evidence from the Pyrenees Reveals Western Mediterranean Climate Variability since Medieval Times
Paleoclimatic evidence is necessary to place the current warming and drying of the western Mediterranean basin in a long-term perspective of natural climate variability. Annually resolved and absolutely dated temperature proxies south of the European Alps that extend back into medieval times are, however, mainly limited to measurements of maximum latewood density (MXD) from high-elevation conifers. Here, the authors present the world’s best replicated MXD site chronology of 414 living and relict Pinus uncinata trees found >2200 m above mean sea level (MSL) in the Spanish central Pyrenees. This composite record correlates significantly ( p ≤ 0.01) with May–June and August–September mean …
Proteomic analysis of tyrosine phosphorylation induced by exogenous expression of oncogenic kinase fusions identified in lung adenocarcinoma.
Kinase fusions are considered oncogenic drivers in numerous types of cancer. In lung adenocarcinoma 5-10% of patients harbor kinase fusions. The most frequently detected kinase fusion involves the Anaplastic Lymphoma Kinase (ALK) and Echinoderm Microtubule-associated protein-Like 4 (EML4). In addition, oncogenic kinase fusions involving the tyrosine kinases RET and ROS1 are found in smaller subsets of patients. In this study, we employed quantitative mass spectrometry-based phosphoproteomics to define the cellular tyrosine phosphorylation patterns induced by different oncogenic kinase fusions identified in patients with lung adenocarcinoma. We show that exogenous expression of the kinase fu…
Diving into the Past: A Paleo Data–Model Comparison Workshop on the Late Glacial and Holocene
Understanding changes in the climate of the late Pleistocene and the Holocene has long been a research topic. Studies rely on different sources of information, ranging from terrestrial and marine archives to a hierarchy of climate modeling activities. In contrast to the climate of the last millennium, novel approaches are necessary to bridge the different temporal and spatial representations of the various archives and the climate models, and to achieve a robust understanding of climate variability and climate processes on centennial-to-millennial time scales.
Cooling and societal change during the Late Antique Little Ice Age from 536 to around 660 AD
Societal upheaval occurred across Eurasia in the sixth and seventh centuries. Tree-ring reconstructions suggest a period of pronounced cooling during this time associated with several volcanic eruptions. Climatic changes during the first half of the Common Era have been suggested to play a role in societal reorganizations in Europe1,2 and Asia3,4. In particular, the sixth century coincides with rising and falling civilizations1,2,3,4,5,6, pandemics7,8, human migration and political turmoil8,9,10,11,12,13. Our understanding of the magnitude and spatial extent as well as the possible causes and concurrences of climate change during this period is, however, still limited. Here we use tree-ring…
Requirements Analysis and Specification for a Molecular Tumor Board Platform Based on cBioPortal
Clinicians in molecular tumor boards (MTB) are confronted with a growing amount of genetic high-throughput sequencing data. Today, at German university hospitals, these data are usually handled in complex spreadsheets from which clinicians have to obtain the necessary information. The aim of this work was to gather a comprehensive list of requirements to be met by cBioPortal to support processes in MTBs according to clinical needs. Therefore, oncology experts at nine German university hospitals were surveyed in two rounds of interviews. To generate an interview guideline a scoping review was conducted. For visual support in the second round, screenshot mockups illustrating the requirements …
Orbital forcing of tree-ring data
Based on an analysis of maximum latewood density data from northern Scandinavia, along with published dendrochronological records, this study finds evidence that previous tree-ring-reliant reconstructions of large-scale near-surface air temperature underestimated long-term pre-industrial warmth during Medieval and Roman times. Solar insolation changes, resulting from long-term oscillations of orbital configurations1, are an important driver of Holocene climate2,3. The forcing is substantial over the past 2,000 years, up to four times as large as the 1.6 W m−2 net anthropogenic forcing since 1750 (ref. 4), but the trend varies considerably over time, space and with season5. Using numerous hi…
Precision Muon Reconstruction in Double Chooz
We describe a muon track reconstruction algorithm for the reactor anti-neutrino experiment Double Chooz. The Double Chooz detector consists of two optically isolated volumes of liquid scintillator viewed by PMTs, and an Outer Veto above these made of crossed scintillator strips. Muons are reconstructed by their Outer Veto hit positions along with timing information from the other two detector volumes. All muons are fit under the hypothesis that they are through-going and ultrarelativistic. If the energy depositions suggest that the muon may have stopped, the reconstruction fits also for this hypothesis and chooses between the two via the relative goodness-of-fit. In the ideal case of a thro…
Reply to 'Limited Late Antique cooling'
Continental-scale temperature variability during the past two millennia
Past global climate changes had strong regional expression. To elucidate their spatio-temporal pattern, we reconstructed past temperatures for seven continental-scale regions during the past one to two millennia. The most coherent feature in nearly all of the regional temperature reconstructions is a long-term cooling trend, which ended late in the nineteenth century. At multi-decadal to centennial scales, temperature variability shows distinctly different regional patterns, with more similarity within each hemisphere than between them. There were no globally synchronous multi-decadal warm or cold intervals that define a worldwide Medieval Warm Period or Little Ice Age, but all reconstructi…
Regional climate model simulations for Europe at 6 and 0.2 k BP: sensitivity to changes in anthropogenic deforestation
International audience; This study aims to evaluate the direct effects of anthropogenic deforestation on simulated climate at two contrasting periods in the Holocene, ∼ 6 and ∼ 0.2 k BP in Eu-rope. We apply the Rossby Centre regional climate model RCA3, a regional climate model with 50 km spatial resolution, for both time periods, considering three alternative descriptions of the past vegetation: (i) potential natural vegetation (V) simulated by the dynamic vegetation model LPJ-GUESS, (ii) potential vegetation with anthro-pogenic land use (deforestation) from the HYDE3.1 (History Database of the Global Environment) scenario (V + H3.1), and (iii) potential vegetation with anthropogenic land …
Conceptual framework for precision cancer medicine in Germany: Consensus statement of the Deutsche Krebshilfe working group ‘Molecular Diagnostics and Therapy’
Precision cancer medicine (PCM) holds great promises to offer more effective therapies to patients based on molecular profiling of their individual tumours. Although the PCM approach seems intuitive, multiple conceptional and structural challenges interfere with the broad implementation of PCM into clinical practice. Accordingly, concerted national and international efforts are needed to guide the further development and broad adoption of PCM in Germany. With support of the 'German Cancer Aid' (Deutsche Krebshilfe [DKH]) a task force 'Molecular Diagnostics and Therapy' was implemented. In two workshops supported by the DKH, delegates from the fourteen comprehensive cancer centresidentified …
The experience of physicians in pharmacogenomic clinical decision support within eight German university hospitals.
Aim: The aim of this study was to assess the physicians’ attitude, their knowledge and their experience in pharmacogenomic clinical decision support in German hospitals. Materials & methods: We conducted an online survey to address physicians of 13 different medical specialties across eight German university hospitals. In total, 564 returned questionnaires were analyzed. Results: The remaining knowledge gap, the uncertainty of test reimbursement and the physicians’ lack of awareness of existing pharmacogenomic clinical decision support systems (CDSS) are the major barriers for implementing pharmacogenomic CDSS into German hospitals. Furthermore, pharmacogenomic CDSS are most effective …