0000000000053149

AUTHOR

Yuki Nagata

0000-0001-9727-6641

showing 6 related works from this author

Experimental and theoretical evidence for bilayer-by-bilayer surface melting of crystalline ice

2017

On the surface of water ice, a quasi-liquid layer (QLL) has been extensively reported at temperatures below its bulk melting point at 273 K. Approaching the bulk melting temperature from below, the thickness of the QLL is known to increase. To elucidate the precise temperature variation of the QLL, and its nature, we investigate the surface melting of hexagonal ice by combining noncontact, surface-specific vibrational sum frequency generation (SFG) spectroscopy and spectra calculated from molecular dynamics simulations. Using SFG, we probe the outermost water layers of distinct single crystalline ice faces at different temperatures. For the basal face, a stepwise, sudden weakening of the hy…

MultidisciplinarySum-frequency generationMaterials scienceBilayerTransition temperatureSum frequency generationSurface meltingWaterNanotechnology02 engineering and technology010402 general chemistry021001 nanoscience & nanotechnology01 natural sciencesSpectral line0104 chemical sciencesMolecular dynamicsChemical physicsCommentariesMelting pointStepwise0210 nano-technologySpectroscopyCrystalline iceLayer (electronics)Proceedings of the National Academy of Sciences
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The Surface of Ice under Equilibrium and Nonequilibrium Conditions

2019

ConspectusThe ice premelt, often called the quasi-liquid layer (QLL), is key for the lubrication of ice, gas uptake by ice, and growth of aerosols. Despite its apparent importance, in-depth understanding of the ice premelt from the microscopic to the macroscopic scale has not been gained. By reviewing data obtained using molecular dynamics (MD) simulations, sum-frequency generation (SFG) spectroscopy, and laser confocal differential interference contrast microscopy (LCM-DIM), we provide a unified view of the experimentally observed variation in quasi-liquid (QL) states. In particular, we disentangle three distinct types of QL states of disordered layers, QL-droplet, and QL-film and discuss…

Materials science010405 organic chemistryHydrogen bondNon-equilibrium thermodynamicsGeneral MedicineGeneral Chemistry010402 general chemistry01 natural sciencesArticle0104 chemical sciencesMolecular dynamicsMacroscopic scaleChemical physicsLubricationMoleculeSpectroscopyLayer (electronics)Accounts of Chemical Research
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A new force field including charge directionality for TMAO in aqueous solution

2016

We propose a new force field for trimethylamine N-oxide (TMAO), which is designed to reproduce the long-lived and highly directional hydrogen bond between the TMAO oxygen (OTMAO) atom and surrounding water molecules. Based on the data obtained by ab initio molecular dynamics simulations, we introduce three dummy sites around OTMAO to mimic the OTMAO lone pairs and we migrate the negative charge on the OTMAO to the dummy sites. The force field model developed here improves both structural and dynamical properties of aqueous TMAO solutions. Moreover, it reproduces the experimentally observed dependence of viscosity upon increasing TMAO concentration quantitatively. The simple procedure of the…

Aqueous solution010304 chemical physicsChemistryHydrogen bondGeneral Physics and Astronomy010402 general chemistry01 natural sciencesForce field (chemistry)0104 chemical sciencesMolecular dynamicsChemical physicsComputational chemistryAb initio quantum chemistry methods0103 physical sciencesMoleculeDirectionalityPhysical and Theoretical ChemistryLone pairThe Journal of Chemical Physics
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Molecular Dynamics Simulations of SFG Librational Modes Spectra of Water at the Water–Air Interface

2016

At the water–air interface, the hydrogen-bond network of water molecules is interrupted, and accordingly, the structure and dynamics of the interfacial water molecules are altered considerably compared with the bulk. Such interfacial water molecules have been studied by surface-specific vibrational sum-frequency generation (SFG) spectroscopy probing high-frequency O–H stretch and H–O–H bending modes. In contrast, the low-frequency librational mode has been much less studied with SFG. Because this mode is sensitive to the hydrogen-bond connectivity, understanding the librational mode of the interfacial water is crucial for unveiling a microscopic view of the interfacial water. Here, we compu…

ChemistryAnalytical chemistry02 engineering and technology010402 general chemistry021001 nanoscience & nanotechnology01 natural sciencesSpectral lineForce field (chemistry)0104 chemical sciencesSurfaces Coatings and FilmsElectronic Optical and Magnetic MaterialsMolecular dynamicsDipoleGeneral EnergyPolarizabilityChemical physicsMoleculePhysics::Chemical PhysicsPhysical and Theoretical Chemistry0210 nano-technologySpectroscopyPhysics::Atmospheric and Oceanic PhysicsThe Journal of Physical Chemistry C
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Lipid carbonyl groups terminate the hydrogen bond network of membrane-bound water.

2015

We present a combined experimental sum-frequency generation (SFG) spectroscopy and ab initio molecular dynamics simulations study to clarify the structure and orientation of water at zwitterionic phosphatidylcholine (PC) lipid and amine N-oxide (AO) surfactant monolayers. Simulated O-H stretch SFG spectra of water show good agreement with the experimental data. The SFG response at the PC interface exhibits positive peaks, whereas both negative and positive bands are present for the similar zwitterionic AO interface. The positive peaks at the water/PC interface are attributed to water interacting with the lipid carbonyl groups, which act as efficient hydrogen bond acceptors. This allows the …

MembranesChemistryHydrogen bondInorganic chemistryWaterHydrogen BondingMolecular Dynamics SimulationLipidsMolecular dynamicsCrystallographychemistry.chemical_compoundMembranePulmonary surfactantPhosphatidylcholineMonolayerPhosphatidylcholinesGeneral Materials ScienceAmine gas treatingPhysical and Theoretical ChemistrySum frequency generation spectroscopyThe journal of physical chemistry letters
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Ab Initio Liquid Water Dynamics in Aqueous TMAO Solution

2015

Ab initio molecular dynamics (AIMD) simulations in trimethylamine N-oxide (TMAO)-D2O solution are employed to elucidate the effects of TMAO on the reorientational dynamics of D2O molecules. By decomposing the O-D groups of the D2O molecules into specific subensembles, we reveal that water reorientational dynamics are retarded considerably in the vicinity of the hydrophilic TMAO oxygen (O(TMAO)) atom, due to the O-D···O(TMAO) hydrogen-bond. We find that this reorientational motion is governed by two distinct mechanisms: The O-D group rotates (1) after breaking the O-D···O(TMAO) hydrogen-bond, or (2) together with the TMAO molecule while keeping this hydrogen-bond intact. While the orientatio…

Aqueous solutionLiquid waterAb initioTrimethylamineRadial distributionForce field (chemistry)Surfaces Coatings and FilmsAb initio molecular dynamicschemistry.chemical_compoundchemistryComputational chemistryChemical physicsMaterials ChemistryMoleculePhysical and Theoretical ChemistryThe Journal of Physical Chemistry B
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