0000000000076200
AUTHOR
Simone Contini
A Collaborative Filtering Approach for Drug Repurposing
A recommendation system is proposed based on the construction of Knowledge Graphs, where physical interaction between proteins and associations between drugs and targets are taken into account. The system suggests new targets for a given drug depending on how proteins are linked each other in the graph. The framework adopted for the implementation of the proposed approach is Apache Spark, useful for loading, managing and manipulating data by means of appropriate Resilient Distributed Datasets (RDD). Moreover, the Alternating Least Square (ALS) machine learning algorithm, a Matrix Factorization algorithm for distributed and parallel computing, is applied. Preliminary obtained results seem to…
A recommendation system for the prediction of drug-target associations
In this chapter a recommendation system is presented, based on the integration of a Protein-Protein Interaction (PPI) network taken from the Intact database, and a set of associations between drugs and targets taken from the DrugBank database. Depending on how proteins are connected on the PPI network, given an input drug the system suggests new targets. The framework adopted for the implementation is Apache Spark, useful for loading, managing and manipulating data by means of appropriate Resilient Distributed Datasets (RDD), and for the use of the Alternating Least Square (ALS) machine learning algorithm, a Matrix Factorization algorithm for distributed and parallel computing.Finally, an a…