Content variability of bioactive secondary metabolites in Hypericum perforatum L

Abstract St John’s Wort (Hypericum perforatum L.; Hypericaceae) is a perennial medicinal herb widespread and largely used in folk medicine inside the Mediterranean basin. Many bioactive compounds have been identified within its extracts. Under a pharmacological point of view, the most important of them belong to the chemical classes of naphthodianthrones, phloroglucinols and polyphenols. Many factors have been claimed responsible for the phytochemical variability in Hypericum perforatum, such as genotype, geographical origin, harvesting stage and age of the plants. Yet, when harvested plant material is addressed to the industry, the standardization of the active ingredients over cultivation…

Preliminary insights into the molecular barcoding data of Turraea socotrana (Meliaceae) from Socotra (Yemen)

The relationship of two geographically and ecologically separated populations of Turraea socotrana Styles and F. White (Meliaceae), a vulnerable and scattered shrub from the island of Socotra (Yemen), was explored using preliminary molecular data. The nuclear ribosomal ITS region was used to screen the level of genetic divergence of T. socotrana from ecologically distant localities in comparison to a few other species of Turraea and closely related genera. The individuals from the inland (Diksam) differed from the western coastal ones (Ma’alah) by vegetative characters and by the rbcL gene. This may be due to the fact that the population from Ma’alah grows on lithosoil slopes directly expos…

Development of a Real-Time Loop-Mediated Isothermal Amplification Assay for the Rapid Detection of Olea Europaea Geminivirus

A real-time loop-mediated isothermal amplification (LAMP) assay was developed for simple, rapid and efficient detection of the Olea europaea geminivirus (OEGV), a virus recently reported in different olive cultivation areas worldwide. A preliminary screening by end-point PCR for OEGV detection was conducted to ascertain the presence of OEGV in Sicily. A set of six real-time LAMP primers, targeting a 209-nucleotide sequence elapsing the region encoding the coat protein (AV1) gene of OEGV, was designed for specific OEGV detection. The specificity, sensitivity, and accuracy of the diagnostic assay were determined. The LAMP assay showed no cross-reactivity with other geminiviruses and was allow…

Cultivar e selezioni di fragola per le aree meridionali

Increased illumination levels enhance biosynthesis of aloenin A and aloin B in Aloe arborescens Mill., but lower their per-plant yield

Abstract Leaves of Aloe arborescens Mill. are a relevant source of secondary metabolites of pharmaceutical relevance. Notwithstanding, specialized cultivations of A. arborescens are still rather limited, and a straightforward agronomical research addressed to the obtainment of high-quality material is lacking. With the purpose to fill this gap, from 2016 to 2018, a trial was arranged to evaluate the growth and development of A. arborescens, along with the production of four active metabolites (aloin A and B, aloenin A, and isoaloeresin D) with varying some growth conditions. Two growth substrates (“A”- a commercial substrate, and “B”- the same substrate + 20 % perlite), two durations of pre…

Morphological and genetic variation of Chamaerops humilis (Arecaceae) in relation to the altitude

The Mediterranean dwarf palm (Chamaerops humilis L.) is native to Western and Central Mediterranean. Since classical times this species has been cultivated and several varieties have been described on material of unknown origins. In this study, plants grown from seeds collected in the wild from seven populations spread along the Mediterranean basin were cultivated under the same environmental conditions, investigated morphologically and genetically by screening the polymorphism of ten SSR loci. Two groups are clearly separated, the populations growing at low altitudes and those living above a thousand meters of altitude. Due to morphological, geographic and environmental isolation, here it …

Rhynchophorus ferrugineus attack affects a group of compounds rather than rearranging Phoenix canariensis metabolic pathways

The red palm weevil (RPW; Rhynchophorus ferrugineus) is spreading worldwide and severely harming many palm species. However, most studies on RPW focused on insect biology, and little information is available about the plant response to the attack. In the present experiment, we used metabolomics to study the alteration of the leaf metabolome of Phoenix canariensis at initial (1st stage) or advanced (2nd stage) attack by RPW compared with healthy (unattacked) plants. The leaf metabolome significantly varied among treatments. At the 1st stage of attack, plants showed a reprogramming of carbohydrate and organic acid metabolism; in contrast, peptides and lipid metabolic pathways underwent more c…

RNA-Seq analysis to investigate alternate bearing mechanism in Pistacia vera L

Pistachio (Pistacia vera L.) production suffers a high level of alternate bearing. The mechanism underlying this negative phenomenon is different from other species, such as apple and olive. Pistachio produces a high number of inflorescence buds every year that in heavy cropping trees (“ON”) mostly fall during the kernel development phase, which occurs in July-August. Primary metabolites (i.e., carbohydrates) play a key role in the signaling related to inflorescence bud abscission. In this work, RNA-Seq was used as a tool to investigate transcriptome of inflorescence buds and fruits, sampled from branches with low (“OFF”) and high (“ON”) crop load. Reference based RNA-Seq analysis using Ara…

An integrated approach to the study of Hypericum occurring in Sicily

An integrated approach to the study of taxa of the genus Hypericum occurring in Sicily is proposed. The results of morphological, biochemical, and molecular analyses are combined to better assess the relationships between the species investigated and test the suitability of DNA barcoding technique in the discrimination of these taxa. For the name Hypericum aegypticum subsp. webbii (Spach) N. Robson a lectotype is designated. For Hypericum triquetrifolium Turra a lectotype and a supporting epitype are designated. The presence of Hypericum perforatum L. subsp. perforatum is excluded from Sicily and the previous reports have to be referred to H. perforatum subsp. veronense (Schrank) Ces. Hyper…

Variations of essential oil constituents in oregano (Origanum vulgare subsp. viridulum (= o. heracleoticum) over cultivation cycles

Oregano is&mdash

Addition of high C:N crop residues to a P-limited substrate constrains the benefits of arbuscular mycorrhizal symbiosis for wheat P and N nutrition

Many aspects concerning the role of arbuscular mycorrhizal (AM) fungi in plant nutrient uptake from organic sources remain unclear. Here, we investigated the contribution of AM symbiosis to N and P uptake by durum wheat after the addition of a high C:N biomass to a P-limited soil. Plants were grown in pots in the presence or absence of a multispecies AM inoculum, with (Org) or without (Ctr) the addition of 15N-labelled organic matter (OM). A further treatment, in which 15N was applied in mineral form (Ctr+N) in the same amount as that supplied in the Org treatment, was also included. Inoculation with AM had positive effects on plant growth in both control treatments (Ctr and Ctr+N), mainly …

Transcriptome Analysis of Pistacia vera Inflorescence Buds in Bearing and Non-Bearing Shoots Reveals the Molecular Mechanism Causing Premature Flower Bud Abscission

The alteration of heavy (&ldquo

Transcriptome analysis of Phoenix canariensis Chabaud in response to Rhynchophorus ferrugineus Olivier attacks

Red Palm Weevil (RPW, Rhynchophorus ferrugineus Olivier) threatens most palm species worldwide. Until now, no studies have analyzed the gene regulatory networks of Phoenix canariensis (Chabaud) in response to RPW attacks. The aim of this study was to fill this knowledge gap. Providing this basic knowledge is very important to improve its management.Results: A deep transcriptome analysis was performed on fully expanded leaves of healthy non-infested trees and attacked trees at two symptom stages (middle and late infestation). A total of 54 genes were significantly regulated during middle stage. Pathway enrichment analysis showed that phenylpropanoid-related pathways were induced at this stag…

Contribution to the identification of Dianthus rupicola (Caryophyllaceae) subspecies using morphological and molecular approaches

The systematic relationships between the five different subspecies actually recognized within Dianthus rupicola (subsp. aeolicus , subsp. bocchorianus , subsp. hermaensis, subsp. lopadusanus and subsp. rupicola ), were assessed by means of morphometric and molecular analysis. Our results highlighted the molecular differences between the five subspecies of D. rupicola and a morphological differentiation of four groups being D. rupicola subsp. aeolicus and D. rupicola subsp. rupicola partly overlapping. At the present state of knowledge, a subspecific status seems the most appropriate for all the recognized subspecies of D. rupicola . The names D. aeolicus , D. bisignanii var. virescens , D. …

DNA barcoding for Arecaceae and Fabaceae species identification of two plant collections

DNA barcoding is a well-known technique that enable species identification by using universal DNA sequences from a small fragment of the genome. In this work, the effectiveness of DNA barcoding approach was evaluated in order to identify different taxonomic groups among two families (Arecaceae and Fabaceae) from two flowering plant collections: some were economically important taxa from nursery production and Mediterranean plants with ornamental attitude for possible new introduction. Three chloroplast DNA barcode regions (matK, rbcL and trnH-psbA) proposed by the Consortium for the Barcode of Life (CBOL) were tested in 22 Arecaceae species and in eight Fabaceae species, including Ceratonia…

Gaining Insight into Exclusive and Common Transcriptomic Features Linked to Drought and Salinity Responses across Fruit Tree Crops

The present study aimed at identifying and mapping key genes expressed in root tissues involved in drought and salinity tolerance/resistance conserved among different fruit tree species. Twenty-six RNA-Seq samples were analyzed from six published studies in five plant species (Olea europaea, Vitis riparia Michx, Prunus mahaleb, Prunus persica, Phoenix dactylifera). This meta-analysis used a bioinformatic pipeline identifying 750 genes that were commonly modulated in three salinity studies and 683 genes that were commonly regulated among three drought studies, implying their conserved role in resistance/tolerance/response to these environmental stresses. A comparison was done on the genes th…

Taxonomy and conservation ofPancratium maritimum(Amaryllidaceae) and relatives in the Central Mediterranean

Pancratium maritimum L. (Amaryllidaceae) is a geophyte occurring in the Mediterranean region, from the Black Sea to part of the Atlantic coast. This plant is receiving much attention from the international scientific community due to its value as a bioindicator, the potential industrial value of its chemical compounds, and its use as a commercial ornamental plant. Plant morphometry and sequences of three plastid DNA regions (rbcL, matK, trnH-psbA) were used to assess the phenotypic and genetic variability of this taxon and its closest congeneric species (in particular Pancratium linosae, from the volcanic island of Linosa) in the Central Mediterranean (Sicily, Tunisia and surrounding island…

Transcriptomic Analysis of the Pistacia vera (L.) Fruits Enable the Identification of Genes and Hormone-Related Gene Linked to Inflorescence Bud Abscission

Pistacia vera (L.) is an alternate bearing species. The tree produces axillary inflorescence buds every year. Still, they abscise in “ON” overloaded shoots, causing a limited production in the following “OFF” year, causing a significant and unfavorable production fluctuation. In this work, we carried out de novo discovery and transcriptomic analysis in fruits of “ON” and “OFF” shoots of the cultivar Bianca. We also investigated whether the fruit signaling pathway and hormone biosynthesis directly or indirectly linked to the premature fall of the inflorescence buds causing alternate bearing. We identified 1536 differentially expressed genes (DE…

Advanced Glycation End Products (AGEs): Biochemistry, Signaling, Analytical Methods, and Epigenetic Effects

The advanced glycation end products (AGEs) are organic molecules formed in any living organisms with a great variety of structural and functional properties. They are considered organic markers of the glycation process. Due to their great heterogeneity, there is no specific test for their operational measurement. In this review, we have updated the most common chromatographic, colorimetric, spectroscopic, mass spectrometric, and serological methods, typically used for the determination of AGEs in biological samples. We have described their signaling and signal transduction mechanisms and cell epigenetic effects. Although mass spectrometric analysis is not widespread in the detection of AGEs…

Genetic variability of Chamaerops humilis (Arecaceae) throughout its native range highlights two species movement pathways from its area of origin

AbstractThe European fan palm (Chamaerops humilis, Arecaceae) is the only native palm in continental Europe, providing ecosystem services that are hard to obtain from other species. However, its populations are declining in some areas due to anthropogenic effects including climate change. Knowledge of genetic variability among natural populations is needed to establish conservation plans, to prevent genetic contamination of native stands by cultivated germplasm and to exploit it as an ornamental species. However, information on the genetic similarities among C. humilis populations is scarce. The aims of this work were to study genetic structure in C. humilis using a set of specifically desi…

In-Field and Early Detection of Xylella fastidiosa Infections in Olive Using a Portable Instrument

Xylella fastidiosa subsp. pauca (Xfp) is a gram-negative pathogenic bacteria responsible for serious diseases (Purcell, 2013) that inflicts considerable economic loss (Li et al., 2007; Luvisi et al., 2017). The pathogen has been linked to olive quick decline syndrome (OQDS). This devastating olive disease was first observed in Salento (Apulia, southeastern Italy) in 2009. Infected trees respond to Xfp infection with scattered desiccation of twigs and small branches in the upper crown, which extend to the rest of the canopy, showing the characteristic blight effect. The disease causes tree death within a few years from the onset of symptoms (Martelli, 2016). The primary agronomic procedure f…

Germination Pattern of Chamaerops humilis Seed after Short-Time Storage

Dwarf fan palm (Chamaerops humilis) plays an important ecological role in the thermo Mediterranean vegetation stage, both in woodlands, xerophitic shrub communities and degraded ecosystems. Dwarf fan palm is typically propagated from seeds. Whereas other palm species show reduced germination after few months of seed storage, no information is available on the effects of storage time on seed germinability . We examined the germination pattern of dwarf palm seeds aged after a storage of four, six or eight months in comparison to fresh seed (control). A covariance analysis was performed to test the effect of time within seed-storage treatment. The germination patterns were significantly fitted…

INFLUENCE OF SEED TREATMENT ON GERMINATION PATTERN OF CHAMAEROPS HUMILIS

Dwarf fan palm (Chamaerops humilis L.) is an important Mediterranean species well known for many uses such as gardening, environmental restoration, and technological uses. Dwarf fan palm is usually propagated from seed, which takes up to 100 days to germinate. The germination pattern of dwarf palm seeds was studied during a 100-days length period in relation to different pre-sowing treatments (hot water, sulphuric acid, or mechanical scarification) in comparison to untreated control. A covariance analysis was performed to test the effect of time within seed-treatment treatment. All germination patterns were significantly fitted by a S-shaped (sigmoidal) distribution function with the genera…

Identifying conserved genes involved in crop tolerance to cold stress

Low temperature is a limiting factor for crop productivity in tropical and subtropical climates. Cold stress response in plants involves perceiving and relaying the signal through a transcriptional cascade composed of different transduction components, resulting in altered gene activity. We performed a meta-analysis of four previously published datasets of cold-tolerant and cold-sensitive crops to better understand the gene regulatory networks and identify key genes involved in cold stress tolerance conserved across phylogenetically distant species. Re-analysing the raw data with the same bioinformatics pipeline, we identified common cold tolerance-related genes. We found 236 and 242 common…

Taxonomy and conservation of Pancratium maritimum (Amaryllidaceae) and relatives in the Central Mediterranean

Pancratium maritimum L. (Amaryllidaceae) is a geophyte occurring in the Mediterranean region, from the Black Sea to part of the Atlantic coast. This plant is receiving much attention from the international scientific community due to its value as a bioindicator, the potential industrial value of its chemical compounds, and its use as a commercial ornamental plant. Plant morphometry and sequences of three plastid DNA regions (rbcL, matK, trnH-psbA) were used to assess the phenotypic and genetic variability of this taxon and its closest congeneric species (in particular Pancratium linosae, from the volcanic island of Linosa) in the Central Mediterranean (Sicily, Tunisia and surrounding island…