0000000000179162

AUTHOR

Stephen R. Quake

showing 6 related works from this author

Single-cell RNA sequencing of SARS-CoV-2 cell entry factors in the preconceptional human endometrium.

2021

Abstract STUDY QUESTION Are SARS-CoV-2 canonical cell entry machinery, consisting of ACE2, TMPRSS2, NRP1 and LY6E, or alternative potential cell entry machinery, consisting of BSG, ANPEP, CD209, CLEC4G, TMPRSS4, TMPRSS11A, FURIN, CTSB, CTSL and IFITM1, expressed in the human endometrium across the menstrual cycle? SUMMARY ANSWER Analysis of cell entry factors for SARS-CoV-2 by single-cell RNA-sequencing (scRNAseq) in the preconceptional human endometrium reveals low risk of infection. WHAT IS KNOWN ALREADY Gene expression datasets from bulk endometrial tissue show no significant expression of the SARS-CoV-2 receptor ACE2 and TMPRSS2. This is in contrast to reported expression of ACE2 at the…

HUTER ProjectCell typeStromal cellvirusesACE2BiologyEndometriumTranscriptomeAndrologyEndometriumPregnancyGene expressionmedicinemedia_common.cataloged_instanceHumansNRP1European unionGeneTMPRSS2media_commonSARS-CoV-2Sequence Analysis RNARehabilitationDeciduaSerine EndopeptidasesObstetrics and Gynecologyvirus diseasesCOVID-19Membrane ProteinsscRNAseqVirus InternalizationAcademicSubjects/MED00905NRPImedicine.anatomical_structureReproductive MedicineFemaleOriginal ArticleHuman reproduction (Oxford, England)
researchProduct

Single cell RNAseq provides a molecular and cellular cartography of changes to the human endometrium through the menstrual cycle

2018

SummaryIn a human menstrual cycle, the endometrium undergoes remodeling, shedding, and regeneration, all of which are driven by substantial gene expression changes in the underlying cellular hierarchy. Despite its importance in human fertility and regenerative biology, mechanistic understanding of this unique type of tissue homeostasis remains rudimentary. We characterized the transcriptomic transformation of human endometrium at single cell resolution, dissecting the multidimensional cellular heterogeneity of this tissue across the entire natural menstrual cycle. We profiled the behavior of 6 endometrial cell types, including a previously uncharacterized ciliated epithelial cell type, duri…

TranscriptomeCell typemedicine.anatomical_structureStromaRegeneration (biology)CellmedicineBiologyEndometriumTissue homeostasisEpitheliumCell biology
researchProduct

Single-cell RNA Expression of SARS-CoV-2 Cell Entry Factors in Human Endometrium during Preconception

2020

AbstractWe investigated potential SARS-CoV-2 tropism in human endometrium by single-cell RNA-sequencing of viral entry-associated genes in healthy women. Percentages of endometrial cells expressing ACE2, TMPRSS2, CTSB, or CTSL were <2%, 12%, 80%, and 80%, respectively, with 0.7% of cells expressing all four genes. Our findings imply low efficiency of SARS-CoV-2 infection in the endometrium before embryo implantation, providing information to assess preconception risk in asymptomatic carriers.

Andrologymedicine.anatomical_structureSevere acute respiratory syndrome coronavirus 2 (SARS-CoV-2)CellmedicineEmbryoBiologyEndometriumGeneAsymptomatic carrierTMPRSS2Tropism
researchProduct

SINGLE CELL TRANSCRIPTOMES FROM UTERINE FIBROIDS AND FIBROID-FREE MYOMETRIUM ELUCIDATE MYOMETRIAL TUMORIGENESIS

2020

Transcriptomemedicine.anatomical_structureReproductive MedicineUterine fibroidsCellmedicineMyometriumCancer researchObstetrics and GynecologyBiologyCarcinogenesismedicine.disease_causemedicine.diseaseFertility and Sterility
researchProduct

Single cell RNAseq analyses of uterine fibroids and fibroid-free myometria reveal previously unidentified cell type and state

2019

Cell typemedicine.anatomical_structureReproductive MedicineUterine fibroidsCellmedicineCancer researchObstetrics and GynecologyBiologymedicine.diseaseFertility and Sterility
researchProduct

Single cell RNAseq provides a molecular and cellular cartography of changes to the human endometrium through the menstrual cycle

2018

In a human menstrual cycle, the endometrium undergoes remodeling, shedding, and regeneration which are driven by substantial gene expression changes in the underlying cellular hierarchy. Despite its importance in human fertility and regenerative biology, mechanistic understanding of this unique type of tissue homeostasis remains rudimentary. Here, we characterized the transcriptomic transformation of human endometrium at single cell resolution, dissecting multidimensional cellular heterogeneity of the tissue across the entire natural menstrual cycle. We analyzed 6 endometrial cell types, including a previously uncharacterized ciliated epithelial cell type, during four major phases of endome…

0301 basic medicineCell typeRegeneration (biology)CellObstetrics and GynecologyBiologyEndometriumEpitheliumCell biologyTranscriptome03 medical and health sciences030104 developmental biologymedicine.anatomical_structureReproductive MedicineStromamedicineTissue homeostasisFertility and Sterility
researchProduct