0000000000179782

AUTHOR

Christine Koehler

showing 11 related works from this author

Synthesis and Evaluation of Novel Ring‐Strained Noncanonical Amino Acids for Residue‐Specific Bioorthogonal Reactions in Living Cells

2021

Abstract Bioorthogonal reactions are ideally suited to selectively modify proteins in complex environments, even in vivo. Kinetics and product stability of these reactions are crucial parameters to evaluate their usefulness for specific applications. Strain promoted inverse electron demand Diels–Alder cycloadditions (SPIEDAC) between tetrazines and strained alkenes or alkynes are particularly popular, as they allow ultrafast labeling inside cells. In combination with genetic code expansion (GCE)‐a method that allows to incorporate noncanonical amino acids (ncAAs) site‐specifically into proteins in vivo. These reactions enable residue‐specific fluorophore attachment to proteins in living mam…

FluorophoreKinetics010402 general chemistry01 natural sciencesCatalysischemistry.chemical_compoundIn vivoChemical BiologyAnimalsAmino AcidsFluorescent Dyeschemistry.chemical_classificationCycloaddition ReactionFull Paper010405 organic chemistryChemistryOrganic ChemistryProteinsprotein engineeringGeneral ChemistryProtein engineeringFull PapersGenetic codelive-cell labeling0104 chemical sciencesAmino acidkineticsAlkynesclick chemistryBiophysicsClick chemistryBioorthogonal chemistryunnatural amino acidsChemistry – A European Journal
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Inducible Genetic Code Expansion in Eukaryotes

2020

Abstract Genetic code expansion (GCE) is a versatile tool to site‐specifically incorporate a noncanonical amino acid (ncAA) into a protein, for example, to perform fluorescent labeling inside living cells. To this end, an orthogonal aminoacyl‐tRNA‐synthetase/tRNA (RS/tRNA) pair is used to insert the ncAA in response to an amber stop codon in the protein of interest. One of the drawbacks of this system is that, in order to achieve maximum efficiency, high levels of the orthogonal tRNA are required, and this could interfere with host cell functionality. To minimize the adverse effects on the host, we have developed an inducible GCE system that enables us to switch on tRNA or RS expression whe…

Context (language use)Computational biology010402 general chemistry01 natural sciencesBiochemistryInsert (molecular biology)Amino Acyl-tRNA SynthetasesRNA TransferEscherichia coliHumansunnatural amino acidAmino AcidsMolecular BiologyT-RExchemistry.chemical_classificationTet-On010405 organic chemistryChemistryCommunicationOrganic ChemistryEukaryotaGenetic codeamber suppressionCommunications0104 chemical sciencesAmino acidMaximum efficiencyFluorescent labellingHEK293 CellsGenetic CodePylRSTransfer RNAMolecular MedicineAmber Stop CodonChemBioChem
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Bistetrazine-Cyanines as Double-Clicking Fluorogenic Two-Point Binder or Crosslinker Probes

2018

Fluorogenic probes can be used to minimize the background fluorescence of unreacted and nonspecifically adsorbed reagents. The preceding years have brought substantial developments in the design and synthesis of bioorthogonally applicable fluorogenic systems mainly based on the quenching effects of azide and tetrazine moieties. The modulation power exerted by these bioorthogonal motifs typically becomes less efficient on more conjugated systems; that is, on probes with redshifted emission wavelength. To reach efficient quenching, that is, fluorogenicity, even in the red range of the spectrum, we present the synthesis, fluorogenic, and conjugation characterization of bistetrazine-cyanine pro…

chemistry.chemical_classificationQuenching (fluorescence)010405 organic chemistryChemistryOrganic ChemistryPeptideGeneral ChemistryConjugated system010402 general chemistry01 natural sciencesFluorescenceCombinatorial chemistryCatalysis0104 chemical sciencesTetrazinechemistry.chemical_compoundCovalent bondAzideBioorthogonal chemistryChemistry - A European Journal
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Comparative analysis of the coordinated motion of Hsp70s from different organelles observed by single-molecule three-color FRET.

2021

Cellular function depends on the correct folding of proteins inside the cell. Heat-shock proteins 70 (Hsp70s), being among the first molecular chaperones binding to nascently translated proteins, aid in protein folding and transport. They undergo large, coordinated intra- and interdomain structural rearrangements mediated by allosteric interactions. Here, we applied a three-color single-molecule Forster resonance energy transfer (FRET) combined with three-color photon distribution analysis to compare the conformational cycle of the Hsp70 chaperones DnaK, Ssc1, and BiP. By capturing three distances simultaneously, we can identify coordinated structural changes during the functional cycle. Be…

chemistry.chemical_classificationOrganellesMultidisciplinarySaccharomyces cerevisiae ProteinsAllosteric regulationPeptideSaccharomyces cerevisiaeBiological SciencesMitochondrial Membrane Transport ProteinsRecombinant ProteinsSingle Molecule ImagingFolding (chemistry)Förster resonance energy transferchemistryHeat shock proteinBiophysicsEscherichia coliFluorescence Resonance Energy TransferMoleculeProtein foldingNucleotideHSP70 Heat-Shock ProteinsMolecular ChaperonesProceedings of the National Academy of Sciences of the United States of America
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MultiBacTAG-Genetic Code Expansion Using the Baculovirus Expression System in Sf21 Cells

2018

The combination of genetic code expansion (GCE) and baculovirus-based protein expression in Spodoptera frugiperda cells is a powerful tool to express multiprotein complexes with site-specifically introduced noncanonical amino acids. This protocol describes the integration of synthetase and tRNA gene indispensable for GCE into the backbone of the Bacmid, the Tn7-mediated transposition of various genes of interest, as well as the final expression of protein using the MultiBacTAG system with different noncanonical amino acids.

0301 basic medicinechemistry.chemical_classificationbiologyChemistryvirusesBaculovirus expressionComputational biologySpodopteraGenetic codebiology.organism_classificationAmino acidTransposition (music)03 medical and health sciences030104 developmental biologyTransfer RNAGeneSf21
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Synthesis of Azido-Glycans for Chemical Glycomodification of Proteins

2018

chemistry.chemical_classificationGlycanGlycosylationbiology010405 organic chemistryChemistryStereochemistryOrganic Chemistry010402 general chemistry01 natural sciences0104 chemical scienceschemistry.chemical_compoundbiology.proteinPhysical and Theoretical ChemistryGlycoproteinEuropean Journal of Organic Chemistry
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CCDC 1565153: Experimental Crystal Structure Determination

2018

Related Article: Mirella Wawryszyn, Paul F. Sauter, Martin Nieger, Martin R.Koos, Christine Koehler, Burkhard Luy, Edward A. Lemke, Stefan Bräse|2018|Eur.J.Org.Chem.|2018|4296|doi:10.1002/ejoc.201800602

Space GroupCrystallographyCrystal SystemCrystal StructureCell Parameters8-(benzyloxy)-2-(4-methoxyphenyl)-6-[(4-methylphenyl)sulfanyl]hexahydro-2H-pyrano[32-d][13]dioxin-7-yl chloroacetateExperimental 3D Coordinates
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CCDC 1565150: Experimental Crystal Structure Determination

2018

Related Article: Mirella Wawryszyn, Paul F. Sauter, Martin Nieger, Martin R.Koos, Christine Koehler, Burkhard Luy, Edward A. Lemke, Stefan Bräse|2018|Eur.J.Org.Chem.|2018|4296|doi:10.1002/ejoc.201800602

Space GroupCrystallography(1R2R3R4R5R)-2-[(acetyloxy)methyl]-6-azido-5-(13-dioxo-13-dihydro-2H-isoindol-2-yl)oxane-34-diyl diacetateCrystal SystemCrystal StructureCell ParametersExperimental 3D Coordinates
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CCDC 1565151: Experimental Crystal Structure Determination

2018

Related Article: Mirella Wawryszyn, Paul F. Sauter, Martin Nieger, Martin R.Koos, Christine Koehler, Burkhard Luy, Edward A. Lemke, Stefan Bräse|2018|Eur.J.Org.Chem.|2018|4296|doi:10.1002/ejoc.201800602

Space GroupCrystallography(2S3R4R5S6R)-3-(13-dioxoisoindolin-2-yl)-2-(ethylthio)-6-(hydroxymethyl)-5-((4-methoxybenzyl)oxy)tetrahydro-2H-pyran-4-yl acetateCrystal SystemCrystal StructureCell ParametersExperimental 3D Coordinates
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CCDC 1565154: Experimental Crystal Structure Determination

2018

Related Article: Mirella Wawryszyn, Paul F. Sauter, Martin Nieger, Martin R.Koos, Christine Koehler, Burkhard Luy, Edward A. Lemke, Stefan Bräse|2018|Eur.J.Org.Chem.|2018|4296|doi:10.1002/ejoc.201800602

(2S3S4S5S6S)-45-bis(benzyloxy)-6-[(benzyloxy)methyl]-2-{[t-butyl(diphenyl)silyl]oxy}oxan-3-yl acetateSpace GroupCrystallographyCrystal SystemCrystal StructureCell ParametersExperimental 3D Coordinates
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CCDC 1565152: Experimental Crystal Structure Determination

2018

Related Article: Mirella Wawryszyn, Paul F. Sauter, Martin Nieger, Martin R.Koos, Christine Koehler, Burkhard Luy, Edward A. Lemke, Stefan Bräse|2018|Eur.J.Org.Chem.|2018|4296|doi:10.1002/ejoc.201800602

Space GroupCrystallographyCrystal SystemCrystal Structure{4-(acetyloxy)-5-(13-dioxo-13-dihydro-2H-isoindol-2-yl)-6-(ethylsulfanyl)-3-[(4-methoxyphenyl)methoxy]oxan-2-yl}methyl acetateCell ParametersExperimental 3D Coordinates
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