0000000000195199

AUTHOR

Fabio Formenti

showing 2 related works from this author

A bug's life: Delving into the challenges of helminth microbiome studies.

2020

The body of vertebrates is inhabited by trillions of microorganisms, i.e. viruses, archaea, bacteria and unicellular eukaryotes, together referred to as the ‘microbiota’. Similarly, vertebrates also host a plethora of parasitic worms (the ‘macrobiota’), some of which share their environment with the microbiota inhabiting the gastrointestinal tract [1]. Complex interactions between the helminths and the gut microbiota have been associated with establishment of parasite infection, disease manifestations, and host immune-modulation [2, 3]. Remarkably, not only enteric helminths alter the 26 gut microbiome composition [4], but also the infection with blood flukes of the genus Schistosoma has be…

Life Cycleslcsh:Arctic medicine. Tropical medicinelcsh:RC955-962Parasitic Life CyclesRC955-962ZoologyMicrobial GenomicsBiologyGut floraMicrobiologyMedical ConditionsGut bacteriaArctic medicine. Tropical medicineHelminthsparasitic diseasesGeneticsMedicine and Health SciencesParasitic DiseasesHelminthsAnimalsHumansMicrobiomeParasitic life cyclesBacterialcsh:Public aspects of medicineMicrobiotaGut BacteriaPublic Health Environmental and Occupational HealthOrganismsBiology and Life SciencesEukaryotalcsh:RA1-1270Genomicsbiology.organism_classificationInvertebratesViewpointsInfectious DiseasesParasitologyMedical MicrobiologyHelminth InfectionsWolbachiaParasitologyMicrobiomePublic aspects of medicineRA1-1270Parasitic Intestinal DiseasesZoologyBacteriaDevelopmental Biology
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Helminth Microbiota Profiling Using Bacterial 16S rRNA Gene Amplicon Sequencing: From Sampling to Sequence Data Mining

2021

Symbiont microbial communities play important roles in animal biology and are thus considered integral components of metazoan organisms, including parasitic worms (helminths). Nevertheless, the study of helminth microbiomes has thus far been largely overlooked, and symbiotic relationships between helminths and their microbiomes have been only investigated in selected parasitic worms. Over the past decade, advances in next-generation sequencing technologies, coupled with their increased affordability, have spurred investigations of helminth-associated microbial communities aiming at enhancing current understanding of their fundamental biology and physiology, as well as of host-microbe intera…

FOS: Computer and information sciencesBioinformaticsComputational biologyBiologyDNA sequencingSymbiosisHelminthsRNA Ribosomal 16Sparasitic diseasesHelminthAnimalsData MiningHelminthsMicrobiomeGeneBacterial 16S rRNA geneIndirect life cycleHigh-throughput sequencingMicrobiotaHigh-Throughput Nucleotide SequencingGenes rRNASchistosoma mansoniAmplicon sequencingHuman genomeSample collectionWorm-associated microbiome
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