0000000000236520

AUTHOR

Anatoli Krasko

0000-0002-2765-3525

showing 38 related works from this author

Caspase-mediated apoptosis in sponges: cloning and function of the phylogenetic oldest apoptotic proteases from Metazoa

2003

AbstractSponges (phylum Porifera) represent the phylogenetically oldest metazoan phylum. These animals have complex cell adhesion and powerful immune systems which allow the formation of a distinct body plan. Consequently, an apoptotic machinery has to be predicted that allows sponges to eliminate unwanted cells accumulating during development. With the marine sponge Geodia cydonium, it is shown that allografts of these animals undergo apoptosis as demonstrated by apoptotic DNA fragmentation. Extracts from allografts contain an enzymic activity characteristic for caspases; as substrate to determine the cleavage activity, Ac-DEVD-AMC was applied. cDNAs encoding predicted caspase-3-related pr…

Molecular Sequence DataApoptosisCaspase 3SpongeCoumarinsEndopeptidasesAnimalsInvertebrateAmino Acid SequenceCloning MolecularEnzyme InhibitorsMolecular BiologyPhylogenyCaspasebiologyCaspase 3Cell adhesion moleculeAlternative splicingApoptotic DNA fragmentationPotential proapoptotic molecule DD2Cell BiologyBcl-2 homologous proteinbiology.organism_classificationSuberites domunculaCaspaseCaspase InhibitorsPoriferaCell biologyIsoenzymesSuberites domunculaSpongeApoptosisCaspasesbiology.proteinOligopeptidesSequence AlignmentBiochimica et Biophysica Acta (BBA) - Molecular Cell Research
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Diagnosis of sublethal stress in the marine sponge Geodia cydonium: application of the 70 kDa heat-shock protein and a novel biomarker, the Rab GDP d…

1997

Abstract Sponges (Porifera) are among the major phyla inhabiting the marine hard-substrate benthos, both in respect to the number of species and their biomass. Hence reliable biomarkers need to be developed to monitor the environmental load in those animals. Recently, the cDNA for the heat shock protein HSP70 has been isolated from the sponge Geodia cydonium and found to be a reliable indicator for temperature stress. In the present study, we have isolated the Rab GDP-dissociation inhibitor (GDI), which has previously been shown to be a key element in the intracellular traffic system. The 1521 bp long cDNA, encoding sponge GDI, has been isolated and analyzed. The deduced aa sequence ( M r =…

Geodia cydonium; heat shock protein; cold shock; GDP-dissociation inhibitor; hsp70; marine sponge; biomarkers; sublethal stressbiologyHealth Toxicology and MutagenesisAquatic Sciencebiology.organism_classificationYeastHsp70SpongeBiochemistryTranscription (biology)Complementary DNAHeat shock proteinBotanyRabNorthern blotAquatic Toxicology
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Identification and Expression of the SOS Response, aidB-Like, Gene in the Marine Sponge Geodia cydonium: Implication for the Phylogenetic Relationshi…

1998

Sponges (Porifera) are the phylogenetically oldest metazoan organisms. From one member of the siliceous sponges, Geodia cydonium, the cDNA encoding a putative SOS protein, the AidB-like protein of the Ada system from bacteria, was isolated and characterized. The cDNA, GCaidB, comprises an open reading frame of 446 amino acid (aa) residues encoding a polypeptide with a calculated Mr of 49,335. This molecule shows high similarity to the bacterial AidB proteins from Mycobacterium tuberculosis and Escherichia coli and somewhat lower similarities to acyl-CoA dehydrogenases (ADHs) and acyl-CoA oxidases (AOXs). Northern blot analysis confirmed the presence of the complete transcript. The deduced s…

DNA ComplementarySequence analysisMolecular Sequence DataSequence alignmentBiologymedicine.disease_causeAcyl-CoA DehydrogenaseEvolution MolecularBacterial ProteinsPhylogeneticsComplementary DNAGeneticsmedicineAnimalsAmino Acid SequenceSOS Response GeneticsMolecular BiologyGeneEscherichia coliPeptide sequencePhylogenyEcology Evolution Behavior and SystematicsGeneticsBase SequenceEscherichia coli ProteinsAcyl-CoA Dehydrogenase Long-ChainSequence Analysis DNABlotting NorthernInvertebratesPoriferaOpen reading frameBiochemistryOxidoreductasesSequence AlignmentJournal of Molecular Evolution
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Potential multidrug resistance genePOHL: An ecologically relevant indicator in marine sponges

2001

Sponges are sessile filter feeders found in all aquatic habitats from the tropics to the arctic. Against potential environmental hazards, they are provided with efficient defense systems, e.g., protecting chaperones and/or the P-170/multidrug resistance pump system. Here we report on a further multidrug resistance pathway that is related to the pad one homologue (POH1) mechanism recently identified in humans. It is suggested that proteolysis is involved in the inactivation of xenobiotics by the POH1 system. Two cDNAs were cloned, one from the demosponge Geodia cydoniumand a second from the hexactinellid sponge Aphrocallistes vastus. The cDNA from G. cydonium, termed GCPOHL, encodes a deduce…

Health Toxicology and MutagenesisSaccharomyces cerevisiaeBiologybiology.organism_classificationMultiple drug resistanceSpongeBiochemistryComplementary DNABotanyGene expressionEnvironmental ChemistryChemosensitizing agentGeodiaGeneEnvironmental Toxicology and Chemistry
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Cold stress defense in the freshwater sponge Lubomirskia baicalensis

2007

The endemic freshwater sponge Lubomirskia baicalensis lives in Lake Baikal in winter (samples from March have been studied) under complete ice cover at near 0 degrees C, and in summer in open water at 17 degrees C (September). In March, specimens show high metabolic activity as reflected by the production of gametes. L. baicalensis lives in symbiosis with green dinoflagellates, which are related to Gymnodinium sanguineum. Here we show that these dinoflagellates produce the toxin okadaic acid (OA), which is present as a free molecule as well as in a protein-bound state. In metazoans OA inhibits both protein phosphatase-2A and protein phosphatase-1 (PP1). Only cDNA corresponding to PP1 could …

DNA ComplementaryMolecular Sequence DataPhosphataseFresh WaterBiologymedicine.disease_causeModels BiologicalBiochemistrychemistry.chemical_compoundMicroscopy Electron TransmissionWestern blotCatalytic DomainProtein Phosphatase 1Complementary DNAOkadaic AcidPhosphoprotein PhosphatasesmedicineAnimalsHumansHSP70 Heat-Shock ProteinsAmino Acid SequenceProtein Phosphatase 2SymbiosisMolecular BiologyIncubationMolecular massmedicine.diagnostic_testToxinCell BiologyOkadaic acidbiology.organism_classificationPoriferaCold TemperatureSpongechemistryBiochemistryDinoflagellidaFEBS Journal
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Analysis of the axial filament in spicules of the demosponge Geodia cydonium: different silicatein composition in microscleres (asters) and megascler…

2007

The skeleton of the siliceous sponges (Porifera: Hexactinellida and Demospongiae) is supported by spicules composed of bio-silica. In the axial canals of megascleres, harboring the axial filaments, three isoforms of the enzyme silicatein (-alpha, -beta and -gamma) have been identified until now, using the demosponges Tethya aurantium and Suberites domuncula. Here we describe the composition of the proteinaceous components of the axial filament from small spicules, the microscleres, in the demosponge Geodia cydonium that possesses megascleres and microscleres. The morphology of the different spicule types is described. Also in G. cydonium the synthesis of the spicules starts intracellularly …

Gene isoformSpiculeHistologyMorphology (linguistics)Molecular Sequence DataFlagellumPathology and Forensic MedicineDemospongeSponge spiculeSequence Analysis ProteinAnimalsAmino Acid SequenceTethya aurantiumCloning MolecularCytoskeletonPhylogenybiologyAnimal StructuresCell BiologyGeneral MedicineAnatomybiology.organism_classificationSilicon DioxideCathepsinsSuberites domunculaSolubilityGeodiaBiophysicsEuropean journal of cell biology
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Histocompatibility reaction in tissue and cells of the marine sponge Suberites domuncula in vitro and in vivo: central role of the allograft inflamma…

2001

Sponges (Porifera) are the phylogenetically oldest still extant metazoan phylum. Recently elements of their immune system have been cloned and analyzed, primarily from the demosponges Suberites domuncula and Geodia cydonium. By differential display, two genes were identified in S. domuncula, whose translation products are involved in graft rejection/fusion: the allograft inflammatory factor (AIF-1) and the Tcf-like transcription factor (TCF). Since the AIF-1 and TCF genes are upregulated in vivo after tissue transplantation, especially in allografts, we investigated whether this reaction can be monitored in vitro. Therefore, the autogeneic and the allogeneic mixed sponge cell reaction (MSCR…

Lymphoid Enhancer-Binding Factor 1ImmunologyMolecular Sequence DataTacrolimusdemosponges; Suberites domuncula; Geodia cydonium; AIF-1(allograft inflamatory factor 1); TCFMicrobiologyImmune systemGeneticsAnimalsAmino Acid SequenceCloning MoleculareducationTranscription factorPhylogenyeducation.field_of_studyDifferential displaybiologyCalcium-Binding Proteinsbiology.organism_classificationIn vitroRecombinant ProteinsCell biologyHistocompatibilityPoriferaSuberites domunculaDNA-Binding ProteinsSpongeGene Expression RegulationHMG-Box DomainsHistocompatibilityAllograft inflammatory factor 1Transcription Factors
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Expression of silicatein in spicules from the Baikalian sponge

2005

Lake Baikal harbors the largest diversity of sponge species [phylum Porifera] among all freshwater biotopes. The abundantly occurring species Lubomirskia baicalensis was used to study the seasonal silicatein metabolism; the spicules of this species have an unusually thick axial filament, consisting of silicatein, which remains constant in diameter during their growth. In the course of maturation, the size of the silicic acid shell grows, until the final diameter of the spicules of about 8 microm is reached. The seasonal content of silicatein was assessed by use of antibodies raised against silicatein; they stained specifically the axial filaments. In addition we determined, by application o…

chemistry.chemical_classificationbiologyEcologyRNACell BiologyGeneral Medicinebiology.organism_classificationMolecular biologyAmino acidSpongeEnzymeSponge spiculechemistryPeptide sequenceGenePolyacrylamide gel electrophoresisCell Biology International
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Origin of neuronal-like receptors in Metazoa: cloning of a metabotropic glutamate/GABA-like receptor from the marine sponge Geodia cydonium.

1999

To date, no conclusive evidence has been presented for the existence of neuronal-like elements in Porifera (sponges). In the present study, isolated cells from the marine sponge Geodia cydonium are shown to react to the excitatory amino acid glutamate with an increase in the concentration of intracellular calcium [Ca2+]i. This effect can also be observed when the compounds L-quisqualic acid (L-QA) or L-(+)-2-amino-4-phosphonobutyric acid (L-AP-4) are used. The effect of L-QA and L-AP-4, both agonists for metabotropic glutamate receptors (mGluRs), can be abolished by the antagonist of group I mGluRs, (RS)-alpha-methyl-4-carboxyphenylglycine. These data suggest that sponge cells contain an mG…

HistologyMolecular Sequence DataGlutamic AcidClass C GPCRBiologyReceptors Metabotropic GlutamatePathology and Forensic MedicineMiceReceptors GABAAnimalsAmino Acid SequenceCloning MolecularSequence Homology Amino AcidMetabotropic glutamate receptor 4Metabotropic glutamate receptor 7Metabotropic glutamate receptor 6Cell BiologyRecombinant ProteinsPoriferaRatsKineticsDrosophila melanogasternervous systemBiochemistryMetabotropic glutamate receptorMetabotropic glutamate receptor 1CalciumMetabotropic glutamate receptor 3Metabotropic glutamate receptor 2Excitatory Amino Acid AntagonistsSequence AlignmentCell and tissue research
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Antibacterial activity of the sponge Suberites domuncula and its primmorphs: potential basis for epibacterial chemical defense

2003

The epibacterial chemical defense of the marine sponge Suberites domuncula was explored by screening sponge extract, sponge primmorph (3-D aggregates containing proliferating cells) extract and sponge-associated as well as primmorph-associated bacteria for antibacterial activ- ity. 16S rDNA sequencing revealed that the antimicrobially active bacteria belonged to the α - and γ- subdivisions of Proteobacteria (α -Proteobacterium MBIC 3368, Idiomarina sp. and Pseudomonas sp., respectively). Moreover, a recombinant perforin-like protein was cloned from S. domuncula that dis- played strong antibacterial activity. Based on these observations, it is proposed that the sponge may be provided with a …

0303 health sciencesbiology030306 microbiologyPseudomonasAquatic Sciencebiology.organism_classificationMicrobiologySuberites domuncula03 medical and health sciencesSpongePseudomonadales14. Life underwaterProteobacteriaAntibacterial activityEcology Evolution Behavior and SystematicsBacteria030304 developmental biologyPseudomonadaceae
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Arginine kinase in the demosponge Suberites domuncula:regulation of its expression and catalytic activity by silicic acid

2005

SUMMARY In Demospongiae (phylum Porifera) the formation of the siliceous skeleton,composed of spicules, is an energetically expensive reaction. The present study demonstrates that primmorphs from the demosponge Suberites domuncula express the gene for arginine kinase after exposure to exogenous silicic acid. The deduced sponge arginine kinase sequence displays the two characteristic domains of the ATP:guanido phosphotransferases; it can be grouped to the `usual' mono-domain 40 kDa guanidino kinases (arginine kinases). Phylogenetic studies indicate that the metazoan guanidino kinases evolved from this ancestral sponge enzyme; among them are also the `unusual'two-domain 80 kDa guanidino kinas…

DNA ComplementaryArgininePhysiologyMolecular Sequence DataSilicic AcidAquatic ScienceCatalysisGene Expression Regulation EnzymologicEvolution Molecularchemistry.chemical_compoundDemospongeMicroscopy Electron TransmissionAnimalsCluster AnalysisAmino Acid SequenceNorthern blotSilicic acidMolecular BiologyIn Situ HybridizationPhylogenyEcology Evolution Behavior and Systematicschemistry.chemical_classificationBase SequencebiologyKinaseArginine KinaseSequence Analysis DNAArginine kinaseBlotting Northernbiology.organism_classificationPoriferaSuberites domunculaEnzymechemistryBiochemistryInsect Sciencebiology.proteinAnimal Science and ZoologySequence AlignmentJournal of Experimental Biology
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Evolutionary relationships of the metazoan βγ–crystallins, including that from the marine spongeGeodia cydonium

1997

beta gamma-crystallins are one major component of vertebrate lenses. Here the isolation and characterization of a cDNA, coding for the first beta gamma-crystallin molecule from an invertebrate species, the marine sponge Geodia cydonium, is described. The size of the transcript as determined by Northern blotting was 0.7 kb in length. The deduced amino acid sequence consists of 163 aa residues and comprises four repeated motifs which compose the two domains of the beta gamma-crystallin. Motif 3 contains the characteristic beta gamma-crystallin 'Greek key' motif signature, while in each of the three other repeats, one aa residue is replaced by an aa with the same physico-chemical property. The…

DNA ComplementaryMolecular Sequence DataPhysarum polycephalumSequence alignmentPolymerase Chain ReactionGeneral Biochemistry Genetics and Molecular BiologyEvolution MolecularFungal ProteinsPhysarum polycephalumPhylogeneticsComplementary DNAAnimalsHumansAmino Acid SequencePeptide sequencePhylogenyDNA PrimersGene LibraryGeneral Environmental Sciencechemistry.chemical_classificationGeneticsFungal proteinBase SequenceSequence Homology Amino AcidGeneral Immunology and MicrobiologybiologyCoccidioidinGeneral Medicinebiology.organism_classificationCrystallinseye diseasesPoriferaAmino acidSpongechemistryEvolutionary biologysense organsGeneral Agricultural and Biological SciencesSequence AlignmentResearch ArticleProceedings of the Royal Society of London. Series B: Biological Sciences
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Origin of the integrin-mediated signal transduction. Functional studies with cell cultures from the sponge Suberites domuncula

1999

Sponges (phylum Porifera) represent the phylogenetically oldest metazoan animals. Recently, from the marine sponge Geodia cydonium a first cDNA encoding a putative integrin receptor molecule was isolated. In the present study basic functional experiments have been conducted to test the hypothesis that in sponges integrin polypeptides also function as adhesion molecules and as outside-in signaling molecules. The sponge Suberites domuncula has been used for the experiments because from this sponge only has a cell culture been established. Here we report that aggregation factor (AF)-mediated cell-cell adhesion is blocked by the RGDS peptide which is known to interact with beta integrin. Both R…

DNA ReplicationIntegrinsMolecular Sequence DataIntegrinBiologyBiochemistryCD49cEvolution MolecularCalmodulinCell AdhesionAnimalsAmino Acid SequenceRNA MessengerCloning MolecularCell adhesionCells CulturedCell AggregationCell adhesion moleculeSequence Analysis DNAbiology.organism_classificationCell aggregationPoriferaCell biologysuberites domuncula; integrin; calcium; ras; calmodulin; signal transduction; evolution; rgd(s)Suberites domunculaGene Expression RegulationIntegrin alpha Mras Proteinsbiology.proteinCalciumIntegrin beta 6Cell Adhesion MoleculesOligopeptidesSignal TransductionEuropean Journal of Biochemistry
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The 2′-5′-oligoadenylate synthetase in the lowest metazoa: isolation, cloning, expression and functional activity in the sponge Lubomirskia baicalens…

2007

Aquatic animals, especially filter feeders such as sponges [phylum Porifera], are exposed to a higher viral load than terrestrial species. Until now, the antiviral defense system in the evolutionary oldest multicellular organisms, sponges, is not understood. One powerful protection of vertebrates against virus infection is mediated by the interferon (IFN)-inducible 2'-5'-oligoadenylate synthetase [(2-5)A synthetase] system. In the present study we cloned from the freshwater sponge Lubomirskia baicalensis a cDNA encoding a 314 aa long ORF with a calculated size of 35748Da, a putative (2-5)A synthetase, and raised antibodies against the recombinant protein. The native enzyme was identified in…

DNA ComplementaryMolecular Sequence DataImmunologyBiologylaw.inventionEnzyme activatorlawComplementary DNA2'5'-Oligoadenylate SynthetaseAnimalsAmino Acid SequenceCloning MolecularMolecular BiologyGeneIn Situ HybridizationRNA Double-Strandedchemistry.chemical_classification2'-5'-OligoadenylateRNAbiology.organism_classificationMolecular biologyPoriferaEnzyme ActivationSpongePoly I-CEnzymechemistryBiochemistryRecombinant DNAMolecular Immunology
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Molecular and functional analysis of the (6-4) photolyase from the hexactinellid Aphrocallistes vastus.

2003

The hexactinellid sponges (phylum Porifera) represent the phylogenetically oldest metazoans that evolved 570-750 million years ago. At this period exposure to ultraviolet (UV) light exceeded that of today and it may be assumed that this old taxon has developed a specific protection system against UV-caused DNA damage. A cDNA was isolated from the hexactinellid Aphrocallistes vastus which comprises high sequence similarity to genes encoding the protostomian and deuterostomian (6-4) photolyases. Subsequently functional studies were performed. It could be shown that the sponge gene, after transfection into mutated Escherichia coli, causes resistance of the bacteria against UV light. Recombinan…

DNA RepairDNA repairUltraviolet RaysMolecular Sequence DataBiophysicsPyrimidine dimerBiochemistryAnalytical Chemistrychemistry.chemical_compoundComplementary DNAAnimalsAmino Acid SequencePhotolyaseMolecular BiologyGenePhylogenyGeneticsbiologyHexactinellidbiology.organism_classificationRecombinant ProteinsPoriferaSpongechemistryBiochemistryDeoxyribodipyrimidine Photo-LyaseSequence AlignmentDNADNA DamageBiochimica et biophysica acta
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Receptor protein-tyrosine phosphatases: origin of domains (catalytic domain, Ig-related domain, fibronectin type III module) based on the sequence of…

2001

Abstract Reversible tyrosine phosphorylation of proteins is one of the major regulatory physiological events in response to cell-cell- and cell-matrix contact in Metazoa. Previously it was documented that the tyrosine phosphorylating enzymes, the tyrosine kinases (TKs), are autapomorphic characters of Metazoa, including sponges. In this paper the tyrosine dephosphorylating enzymes, the protein-tyrosine phosphatases (PTPs), are studied which can be grouped into two subfamilies, the soluble PTPs and the receptor PTPs (RPTPs). PTPs are characterized by one PTPase domain which interestingly comprises sequence similarity to yeast PTPs. In contrast to the PTPs, the RPTPs – which have been found o…

Molecular Sequence DataImmunoglobulinsBiologyPolymerase Chain ReactionEvolution Molecularchemistry.chemical_compoundCatalytic DomainGene duplicationGeneticsAnimalsAmino Acid SequenceTyrosineCloning MolecularPhylogenychemistry.chemical_classificationPhylogenetic treeSequence Homology Amino AcidTyrosine phosphorylationGeneral MedicineProtein-Tyrosine KinasesAmino acidFibronectinsPoriferaProtein Structure TertiaryOpen reading framechemistryBiochemistryPhosphorylationProtein Tyrosine PhosphatasesTyrosine kinaseSequence AnalysisGene
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Bioencapsulation of living bacteria (Escherichia coli) with poly(silicate) after transformation with silicatein-α gene

2007

Bioencapsulation is an intriguing way to immobilize biological materials, including cells, in silica, metal-oxides or hybrid sol-gel polymers. Until now only the sol-gel precursor technology was utilized to immobilize bacteria or yeast cells in silica. With the discovery of silicatein, an enzyme from demosponges that catalyzes the formation of poly(silicate), it became possible to synthesize poly(silicate) under physiological (ambient) conditions. Here we show that Escherichia coli can be transformed with the silicatein gene, its expression level in the presence of isopropyl beta-D-thiogalactopyranoside (IPTG) can be efficiently intensified by co-incubation with silicic acid. This effect co…

Bacterial capsuleMaterials scienceBiophysicsGene Expressionlac operonBioengineeringmedicine.disease_causelaw.inventionBiomaterialschemistry.chemical_compoundlawEscherichia colimedicineTransgenesSilicic acidEscherichia coliBacterial Capsuleschemistry.chemical_classificationMicrobial ViabilitybiologySilicatesSodiumbiology.organism_classificationCathepsinsYeastEnzymechemistryBiochemistryMechanics of MaterialsMicroscopy Electron ScanningCeramics and CompositesRecombinant DNABacteriaBiomaterials
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Cloning and expression of the putative aggregation factor from the marine sponge Geodia cydonium.

2001

Sponges (phylum Porifera) have extensively been used as a model system to study cell-cell interaction on molecular level. Recently, we identified and cloned the putative aggregation receptor (AR) of the sponge Geodia cydonium, which interacts in a heterophilic way with the aggregation factor (AF) complex. In the present study, antibodies against this complex have been raised that abolish the adhesion function of the enriched sponge AF, the AF-Fraction 6B. Using this antibody as a tool, a complete 1.7 kb long cDNA, GEOCYAF, could be isolated from a cDNA library that encodes the putative AF. Its deduced aa sequence in the N-terminal section comprises high similarity to amphiphysin/BIN1 sequen…

DNA ComplementaryBlotting WesternMolecular Sequence DataBiologyModels BiologicalSH3 domainAntibodieslaw.inventionEvolution Molecularsrc Homology DomainslawComplementary DNACell AdhesionEscherichia coliAnimalsAmino Acid SequenceBinding siteCloning MolecularPhylogenyGalectinCell AggregationGene LibraryCloningDose-Response Relationship DrugSequence Homology Amino AcidcDNA libraryCell MembraneCell BiologySequence Analysis DNAMolecular biologyRecombinant ProteinsPoriferaProtein Structure TertiaryAmphiphysinRecombinant DNAPeptidesCell Adhesion MoleculesProtein BindingJournal of cell science
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Oxygen-Controlled Bacterial Growth in the Sponge Suberites domuncula: toward a Molecular Understanding of the Symbiotic Relationships between Sponge …

2004

ABSTRACT Sponges (phylum Porifera), known to be the richest producers among the metazoans of bioactive secondary metabolites, are assumed to live in a symbiotic relationship with microorganisms, especially bacteria. Until now, the molecular basis of the mutual symbiosis, the exchange of metabolites for the benefit of the other partner, has not been understood. We show with the demosponge Suberites domuncula as a model that the sponge expresses under optimal aeration conditions the enzyme tyrosinase, which synthesizes diphenols from monophenolic compounds. The cDNA isolated was used as a probe to determine the steady-state level of gene expression. The gene expression level parallels the lev…

DNA BacterialDNA ComplementaryOperonMicroorganismMolecular Sequence DataApplied Microbiology and BiotechnologyMicrobiologyMicrobial EcologyComplementary DNAGene clusterHydroxybenzoatesAnimalsAmino Acid SequenceSymbiosisGenePhylogenyEcologybiologyBacteriaBase SequenceSequence Homology Amino AcidMonophenol MonooxygenasePorphobilinogen Synthasebiology.organism_classificationPoriferaSuberites domunculaOxygenSpongeBiochemistryGenes BacterialMultigene FamilyBacteriaFood ScienceBiotechnology
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Matrix-mediated canal formation in primmorphs from the sponge Suberites domuncula involves the expression of a CD36 receptor-ligand system.

2004

Sponges (Porifera), represent the phylogenetically oldest metazoan phylum still extant today. Recently, molecular biological studies provided compelling evidence that these animals share basic receptor/ligand systems, especially those involved in bodyplan formation and in immune recognition, with the higher metazoan phyla. An in vitro cell/organ-like culture system, the primmorphs, has been established that consists of proliferating and differentiating cells, but no canals of the aquiferous system. We show that after the transfer of primmorphs from the demosponge Suberites domuncula to a homologous matrix (galectin), canal-like structures are formed in these 3D-cell aggregates. In parallel …

CD36 AntigensTime FactorsGalectinsRecombinant Fusion ProteinsAmino Acid MotifsMolecular Sequence DataGene ExpressionChick EmbryoLigandsEvolution MolecularDemospongeAllantoisSequence Analysis ProteinAnimalsAmino Acid SequenceCloning MolecularReceptorCells CulturedPhylogenyGalectinCell AggregationGlutathione TransferasebiologyDose-Response Relationship DrugMolecular StructureSequence Homology Amino AcidCell growthCell DifferentiationCell BiologyAnatomyChorionLigand (biochemistry)biology.organism_classificationIn vitroCell biologyExtracellular MatrixPoriferaProtein Structure TertiarySuberites domunculaSpongeThrombospondinsCell DivisionNaphthoquinonesJournal of cell science
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Suppression of allograft rejection in the sponge Suberites domuncula by FK506 and expression of genes encoding FK506-binding proteins in allografts.

2001

SUMMARY Porifera (sponges) are, evolutionarily, the oldest metazoan phylum. Recent molecular data suggest that these animals possess molecules similar to and homologous with those of the innate and adaptive immune systems of higher Metazoa. Applying the biological system of parabiosis and the technique of differential display of mRNA, two cDNAs encoding putative FK506-binding proteins were isolated. FK506 is successfully used in clinics as a drug to prevent allograft rejection and is toxic to Suberites domuncula cells in vitro at doses above 100ng ml−1. Autograft fusion of transplants from S. domuncula was not affected by FK506. Allograft non-fusion was not affected by FK506 at toxic doses;…

Graft RejectionDNA ComplementaryPhysiologyParabiosisMolecular Sequence DataGene ExpressionSequence HomologyAquatic SciencePolymerase Chain ReactionTacrolimusTacrolimus Binding ProteinsImmune systempolycyclic compoundsHomologous chromosomeAnimalsTransplantation HomologousAmino Acid SequenceCloning MolecularMolecular BiologyGeneEcology Evolution Behavior and SystematicsGene LibraryMessenger RNADifferential displaybiologyAnatomybiology.organism_classificationIn vitroCell biologyPoriferaSuberites domunculaInsect ScienceAnimal Science and ZoologyThe Journal of experimental biology
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Mineralization of SaOS-2 cells on enzymatically (silicatein) modified bioactive osteoblast-stimulating surfaces.

2005

There is a demand for novel bioactive supports in surgery, orthopedics, and tissue engineering. The availability of recombinant silica-synthesizing enzyme (silicatein) opens new possibilities for the synthesis of silica-containing bioactive surfaces under ambient conditions that do not damage biomolecules like proteins. Here it is shown that growth of human osteosarcoma SaOS-2 cells on cluster plates precoated with Type 1 collagen is not affected by additional coating of the plates with the recombinant silicatein and incubation with its enzymatic substrate, tetraethoxysilane (TEOS). However, the enzymatic modification of the plates by biosilica deposition on the protein-coated surface cause…

Calcium PhosphatesMaterials scienceSurface PropertiesBiomedical Engineeringchemistry.chemical_elementBiocompatible MaterialsCalciumMineralization (biology)Collagen Type Ilaw.inventionSubstrate SpecificityBiomaterialsCalcification PhysiologicTissue engineeringIn vivolawCell Line TumormedicineHumansSaos-2 cellsOsteoblastsOsteoblastSilanesCathepsinsIn vitroRecombinant Proteinsmedicine.anatomical_structurechemistryBiochemistryRecombinant DNAJournal of biomedical materials research. Part B, Applied biomaterials
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Molecular Evolution of Apoptotic Pathways: Cloning of Key Domains from Sponges (Bcl-2 Homology Domains and Death Domains) and Their Phylogenetic Rela…

2000

Cells from metazoan organisms are eliminated in a variety of physiological and pathophysiological processes by apoptosis. In this report, we describe the cloning and characterization of molecules from the marine sponges Geodia cydonium and Suberites domuncula, whose domains show a high similarity to those that are found in molecules of the vertebrate Bcl-2 superfamily and of the death receptors. The Bcl-2 proteins contain up to four Bcl-2 homology regions (BH). Two Bcl-2-related molecules have been identified from sponges that are provided with two of those regions, BH1 and BH2, and are termed Bcl-2 homology proteins (BHP). The G. cydonium molecule, BHP1_GC, has a putative size of 28,164, w…

Molecular Sequence DataApoptosisBiologyHomology (biology)Evolution MolecularMolecular evolutionGeneticsAnimalsHumansAnkyrinAmino Acid SequenceCloning MolecularMolecular BiologyGenePhylogenyEcology Evolution Behavior and SystematicsCaenorhabditis eleganschemistry.chemical_classificationGeneticsBase SequenceSequence Homology Amino AcidPhylogenetic treeIntronbiology.organism_classificationPoriferaSuberites domunculaProto-Oncogene Proteins c-bcl-2chemistryPeptidesJournal of Molecular Evolution
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Bio-sintering processes in hexactinellid sponges: Fusion of bio-silica in giant basal spicules from Monorhaphis chuni☆

2009

The two sponge classes, Hexactinellida and Demospongiae, comprise a skeleton that is composed of siliceous skeletal elements (spicules). Spicule growth proceeds by appositional layering of lamellae that consist of silica nanoparticles, which are synthesized via the sponge-specific enzyme silicatein. While in demosponges during maturation the lamellae consolidate to a solid rod, the lamellar organization of hexactinellid spicules largely persists. However, the innermost lamellae, near the spicule core, can also fuse to a solid axial cylinder. Similar to the fusion of siliceous nanoparticles and lamella, in several hexactinellid species individual spicules unify during sintering-like processe…

FusionSpiculebiologyHexactinellidMolecular Sequence DataAnimal StructuresAnatomyBlotting NorthernSilicon Dioxidebiology.organism_classificationPoriferaSpongeLamella (surface anatomy)Sponge spiculeStructural BiologySpectrometry Mass Matrix-Assisted Laser Desorption-IonizationComplementary DNAMicroscopy Electron ScanningBiophysicsAnimalsLamellar structureJournal of Structural Biology
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Molecular Mechanism of Spicule Formation in the Demosponge Suberites domuncula: Silicatein-Collagen-Myotrophin

2003

In living organisms four major groups of biominerals exist: (1) iron compounds, which are restricted primarily to Prokaryota; (2) calcium phosphates, found in Metazoa; (3) calcium carbonates, used by Prokaryota, Protozoa, Plantae, Fungi and Metazoa and (4) silica (opal) present in sponges and diatoms (reviewed in: Bengtson 1994; Baeuerlein 2000). It is surprising that the occurrence of silica as a major skeletal element is restricted to some Protozoa and to sponges (Porifera). The element silicon (Si) contributes to 28% of the earth crust and is - after oxygen - the second most abundant element on earth (Windholz 1983).

Siliceous spongeSpiculeeducation.field_of_studybiologychemistry.chemical_elementCalciumbiology.organism_classificationSuberites domunculaMyotrophinSponge spiculeDemospongeBiochemistrychemistryProtozoaeducation
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Innate Immune Defense of the Sponge Suberites domuncula against Bacteria Involves a MyD88-dependent Signaling Pathway

2005

Sponges (phylum Porifera) are the phylogenetically oldest metazoa; as filter feeders, they are abundantly exposed to marine microorganisms. Here we present data indicating that the demosponge Suberites domuncula is provided with a recognition system for Gram-negative bacteria. The lipopolysaccharide (LPS)-interacting protein was identified as a receptor on the sponge cell surface, which recognizes the bacterial endotoxin LPS. The cDNA was isolated, and the protein (Mr 49,937) was expressed. During binding to LPS, the protein dimerizes and interacts with MyD88, which was also identified and cloned. The sponge MyD88 (Mr 28,441) is composed of two protein interaction domains, a Toll/interleuki…

Innate immune systembiologyPattern recognition receptorSignal transducing adaptor proteinCell Biologybiology.organism_classificationBiochemistryMicrobiologyCell biologySuberites domunculaProtein structureSignal transductionReceptorMolecular BiologyDeath domainJournal of Biological Chemistry
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Biochemistry and cell biology of silica formation in sponges

2003

The main inorganic material forming the skeletal elements in Demospongiae as well as in Hexactinellida, the spicules, is amorphous silica. The spicules occur in the cytoplasm and the extracellular space and also in the nucleus (as silicate crystals) of some sponge cells; the function in the latter compartment is unknown. Recent evidence shows that the formation of spicules is mediated by the enzyme silicatein. The cDNA as well as the gene encoding this enzyme was cloned from Suberites domuncula. The recombinant silicatein catalyzes the syn- thesis of amorphous silicate using tetraethoxysilane as substrate. The enzyme is dependent on ferric iron. Silicatein also has proteolytic (cathepsin-li…

chemistry.chemical_classificationHistologyBiologybiology.organism_classificationSilicateCell biologySuberites domunculaMedical Laboratory Technologychemistry.chemical_compoundSpongeSponge spiculeEnzymechemistryBiochemistryCytoplasmGene expressionExtracellularAnatomyInstrumentationMicroscopy Research and Technique
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Increased expression of the potential proapoptotic molecule DD2 and increased synthesis of leukotriene B4 during allograft rejection in a marine spon…

2000

Sponges (Porifera) are a classical model to study the events during tissue transplantation. Applying the 'insertion technique' autografts from the marine sponge Geodia cydonium fuse within 5 days. In contrast, allografts are rejected and destroyed. Here we show that during allograft rejection the cells in the grafts undergo apoptosis; 5 days after transplantation 46% of the cells show signs of apoptosis. In a previous study it was shown that during this process a tumor necrosis factor-like molecule is induced in allo- and xenografts. Molecules grouped to the superfamily of tumor necrosis factor receptors and a series of associated adapter molecules contain the characteristic death domain. T…

Graft RejectionLeukotriene B4Molecular Sequence DataGene ExpressionApoptosisLeukotriene B4Transplantation Autologouschemistry.chemical_compoundDownregulation and upregulationGene expressionAnimalsHumansTransplantation HomologousAmino Acid SequenceCloning MolecularReceptorMolecular BiologyDeath domainSequence Homology Amino AcidChemistryCell BiologyMolecular biologyPoriferaTransplantationAlcohol Oxidoreductasessurgical procedures operativeApoptosisTumor necrosis factor alphaPeptidesCell Death & Differentiation
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Emergence and Disappearance of an Immune Molecule, an Antimicrobial Lectin, in Basal Metazoa

2003

Sponges (phylum Porifera) represent the evolutionarily oldest metazoans that comprise already a complex immune system and are related to the crown taxa of the protostomians and the deuterostomians. Here, we demonstrate the existence of a tachylectin-related protein in the demosponge Suberites domuncula, termed Suberites lectin. The MAPK pathway was activated in response to lipopolysaccharide treatment of the three-dimensional cell aggregates, the primmorphs; this process was abolished by the monosaccharide D-GlcNAc. The cDNA encoding the S. domuncula lectin was identified and cloned; it comprises 238 amino acids (26 kDa) in the open reading frame. The deduced protein has one potential trans…

xbiologyCD69LectinCell Biologymedicine.disease_causebiology.organism_classificationBiochemistryMicrobiologySuberites domunculaOpen reading frameAffinity chromatographyBiochemistryComplementary DNAmedicinebiology.proteinMolecular BiologyEscherichia coliSuberites
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Evolutionary relationships of Metazoa within the eukaryotes based on molecular data from Porifera

1999

Recent molecular data provide strong support for the view that all metazoan phyla, including Porifera, are of monophyletic origin. The relationship of Metazoa, including the Porifera, to Plantae, Fungi and unicellular eukaryotes has only rarely been studied by using cDNAs coding for proteins. Sequence data from rDNA suggested a relationship of Porifera to unicellular eukaryotes (choanoflagellates). However, ultrastructural studies of choanocytes did not support these findings. In the present study, we compared amino acid sequences that are found in a variety of metazoans (including sponges) with those of Plantae, Fungi and unicellular eukaryotes, to obtain an answer to this question. We use…

DNA ComplementaryMolecular Sequence DataProtein Serine-Threonine KinasesBiologyGeneral Biochemistry Genetics and Molecular BiologyEvolution MolecularMonophylyCalmodulinTubulinPhylogeneticsAnimalsHSP70 Heat-Shock ProteinsAmino Acid SequenceCloning MolecularPeptide sequencePhylogenyProtein Kinase CDNA PrimersGeneral Environmental ScienceBase SequenceGeneral Immunology and MicrobiologyPhylogenetic treePhylumChoanocytefungiGeneral Medicinebiology.organism_classificationMolecular biologyPoriferaSpongeEukaryotic CellsEvolutionary biologyMolecular phylogeneticsGeneral Agricultural and Biological SciencesResearch ArticleProceedings of the Royal Society of London. Series B: Biological Sciences
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Isolation and characterization of a cDNA encoding a potential morphogen from the marine sponge Geodia cydonium that is conserved in higher metazoans.

1998

Species belonging to the lowest metazoan phylum, the sponges (Porifera), exhibit a surprisingly complex and multifaceted Bauplan (body plan). Recently, key molecules have been isolated from sponges which demonstrate that the cells of these animals are provided with characteristic metazoan adhesion and signal transduction molecules, allowing tissue formation. In order to understand which factors control the spatial organization of these cells in the sponge body plan, we screened for a cDNA encoding a soluble modulator of the behaviour of endothelial cells. A cDNA encoding a putative protein, which is highly similar to the human and mouse endothelial monocyte-activating polypeptide (EMAP) II …

DNA ComplementaryMolecular Sequence DataSequence alignmentGeneral Biochemistry Genetics and Molecular BiologyConserved sequenceMiceComplementary DNAMorphogenesisAnimalsHumansAmino Acid SequencePeptide sequenceCaenorhabditis elegansConserved SequencePhylogenyGeneral Environmental ScienceGeneral Immunology and MicrobiologybiologyProteinsRNA-Binding ProteinsGeneral Medicinebiology.organism_classificationMolecular biologyNeoplasm ProteinsPoriferaSpongeOpen reading frameBiochemistryCosmidCytokinesGeneral Agricultural and Biological SciencesSequence AlignmentResearch ArticleProceedings. Biological sciences
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Ethylene modulates gene expression in cells of the marine sponge Suberites domuncula and reduces the degree of apoptosis.

1999

Sponges (phylum Porifera) live in an aqueous milieu that contains dissolved organic carbon. This is degraded photochemically by ultraviolet radiation to alkenes, particularly to ethylene. This study demonstrates that sponge cells (here the demosponge Suberites domuncula has been used), which have assembled to primmorphs, react to 5 microM ethylene with a significant up-regulation of intracellular Ca(2+) concentration and with a reduction of starvation-induced apoptosis. In primmorphs from S. domuncula the expression of two genes is up-regulated after exposure to ethylene. The cDNA of the first gene (SDERR) isolated from S. domuncula encodes a potential ethylene-responsive protein, termed ER…

Transcriptional ActivationEthyleneMolecular Sequence DataApoptosisMarine BiologyBiochemistryEvolution Molecularchemistry.chemical_compoundComplementary DNAGene expressionBotanyAnimalsAmino Acid SequenceCloning MolecularMolecular BiologyGenePlant Proteinschemistry.chemical_classificationbiologySequence Homology Amino AcidKinaseProteinsCell BiologySequence Analysis DNAEthylenesbiology.organism_classificationAmino acidPoriferaSuberites domunculaSpongechemistryBiochemistryGene Expression RegulationProtein BiosynthesisCalcium-Calmodulin-Dependent Protein KinasesCalcium-Calmodulin-Dependent Protein Kinase Type 2Food DeprivationSignal TransductionThe Journal of biological chemistry
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Novel mechanism for the radiation-induced bystander effect: nitric oxide and ethylene determine the response in sponge cells.

2006

Until now the bystander effect had only been described in vertebrates. In the present study the existence of this effect has been demonstrated for the phylogenetically oldest metazoan phylum, the Porifera. We used the demosponge Suberites domuncula for the experiments in the two-chamber-system. The lower dish contained irradiated "donor" cells (single cells) and the upper dish the primmorphs ("recipient" primmorphs). The "donor" cells were treated with UV-B light (40 mJ/cm2) and 100 microM hydrogen peroxide (H2O2), factors that exist also in the natural marine aquatic environment of sponges; these factors caused a high level of DNA strand breaks followed by a reduced viability of the cells.…

EthyleneDNA ComplementaryDNA damageCell SurvivalUltraviolet RaysHealth Toxicology and MutagenesisMolecular Sequence DataGene ExpressionApoptosisBiologyNitric OxideModels BiologicalNitric oxideAmidohydrolaseschemistry.chemical_compoundGene expressionGeneticsBystander effectAnimalsAmino Acid SequenceCloning MolecularMolecular BiologyNitriteschemistry.chemical_classificationBase SequenceSequence Homology Amino AcidEthylenesbiology.organism_classificationCell biologyAmino acidPoriferaSuberites domunculachemistryBiochemistryApoptosisDNA DamageMutation research
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Stimulation of protein (collagen) synthesis in sponge cells by a cardiac myotrophin‐related molecule from Suberites domuncula

2000

The body wall of sponges (Porifera), the lowest metazoan phylum, is formed by two epithelial cell layers of exopinacocytes and endopinacocytes, both of which are associated with collagen fibrils. Here we show that a myotrophin-like polypeptide from the sponge Suberites domuncula causes the expression of collagen in cells from the same sponge in vitro. The cDNA of the sponge myotrophin was isolated; the potential open reading frame of 360 nt encodes a 120 aa long protein (Mr of 12,837). The sequence SUBDOMYOL shares high similarity with the known metazoan myotrophin sequences. The expression of SUBDOMYOL is low in single cells but high after formation of primmorph aggregates as well as in in…

Repetitive Sequences Amino AcidMolecular Sequence DataLysinePolymerase Chain ReactionBiochemistryMyotrophinComplementary DNAGeneticsProtein biosynthesisAnimalsAmino Acid SequenceCloning MolecularGrowth SubstanceseducationMolecular BiologyPhylogenyCell Sizeeducation.field_of_studyDose-Response Relationship DrugSequence Homology Amino AcidbiologySequence Analysis DNAbiology.organism_classificationRecombinant ProteinsIn vitroPoriferaUp-RegulationCell biologySuberites domunculaOpen reading frameSpongeIntercellular Signaling Peptides and ProteinsCollagenBiotechnologyThe FASEB Journal
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Selenium affects biosilica formation in the demosponge Suberites domuncula

2005

Selenium is a trace element found in freshwater and the marine environment. We show that it plays a major role in spicule formation in the demosponge Suberites domuncula. If added to primmorphs, an in vitro sponge cell culture system, it stimulates the formation of siliceous spicules. Using differential display of transcripts, we demonstrate that, after a 72-h exposure of primmorphs to selenium, two genes are up-regulated; one codes for selenoprotein M and the other for a novel spicule-associated protein. The deduced protein sequence of selenoprotein M (14 kDa) shows characteristic features of metazoan selenoproteins. The spicule-associated protein (26 kDa) comprises six characteristic repe…

SpiculeBlotting WesternMolecular Sequence DataFluorescent Antibody Techniquechemistry.chemical_elementselenium; silica; silicatein; spicules; spongesBiochemistryAntibodiesSeleniumSponge spiculeDemospongeAnimalsAmino Acid SequenceSelenoproteinsMolecular Biologychemistry.chemical_classificationGlutathione PeroxidaseBase SequencebiologyGene Expression ProfilingProteinsCell BiologyAnatomySilicon Dioxidebiology.organism_classificationCathepsinsUp-RegulationAmino acidSuberites domunculaSpongeBiochemistrychemistrySelenoproteinSuberitesSeleniumFEBS Journal
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Iron Induces Proliferation and Morphogenesis in Primmorphs from the Marine SpongeSuberites domuncula

2002

Dissociated cells from marine demosponges retain their proliferation capacity if they are allowed to form special aggregates, the primmorphs. On the basis of incorporation studies and septin gene expression, we show that Fe3+ ions are required for the proliferation of cells in primmorphs from Suberites domuncula. In parallel, Fe3+ induced the expression of ferritin and strongly stimulated the synthesis of spicules. This result is supported by the finding that the enzymatic activity of silicatein, converting organosilicon to silicic acid, depends on Fe3+. Moreover, the expression of a scavenger receptor molecule, possibly involved in the morphology of spicules, depends on the presence of Fe3…

inorganic chemicalsIronMolecular Sequence DataMorphogenesisFluorescent Antibody TechniqueSeptinModels BiologicalPolymerase Chain ReactionFungal ProteinsSponge spiculeGene expressionGeneticsAnimalsHistidineAmino Acid SequenceReceptors ImmunologicScavenger receptorMolecular BiologyPhylogenyReceptors LipoproteinReceptors ScavengerSequence Homology Amino AcidbiologyEcologySilicatesMembrane ProteinsDNACell BiologyGeneral MedicineScavenger Receptors Class BBlotting Northernbiology.organism_classificationCathepsinsRecombinant ProteinsPoriferaCell biologySuberites domunculaFerritinSpongeFerritinsbiology.proteinCell DivisionDNA and Cell Biology
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Expression of silicatein and collagen genes in the marine sponge Suberites domuncula is controlled by silicate and myotrophin

2000

The major skeletal elements in the (Porifera) sponges, are spicules formed from inorganic material. The spicules in the Demospongiae class are composed of hydrated, amorphous silica. Recently an enzyme, silicatein, which polymerizes alkoxide substrates to silica was described from the sponge Tethya aurantia. In the present study the cDNA encoding silicatein was isolated from the sponge Suberites domuncula. The deduced polypeptide comprises 331 amino acids and has a calculated size of Mr 36 306. This cDNA was used as a probe to study the potential role of silicate on the expression of the silicatein gene. For these studies, primmorphs, a special form of aggregates composed of proliferating c…

chemistry.chemical_classificationeducation.field_of_studyBiologybiology.organism_classificationBiochemistrySilicateMicrobiologyAmino acidSuberites domunculaMyotrophinSpongechemistry.chemical_compoundSponge spiculechemistryBiochemistryComplementary DNAeducationSuberitesEuropean Journal of Biochemistry
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Molecular phylogeny of the freshwater sponges in Lake Baikal

2003

The phylogenetic relationship of the freshwater sponges (Porifera) in Lake Baikal is not well understood. A polyphyletic and/or monophyletic origin have been proposed. The (endemic) Baikalian sponges have been subdivided into two families: endemic Lubomirskiidae and cosmopolitan Spongillidae. In the present study, two new approaches have been made to resolve the phylogenetic relationship of Baikalian sponges; analysis of (1) nucleotide sequences from one mitochondrial gene, the cytochrome oxidase subunit I (COI) and of (2) one selected intron from the tubulin gene. Specimens from the following endemic Baikalian sponge species have been studied; Lubomirskia baicalensis, Baikalospongia interm…

Phylogenetic treeEcologyBiologybiology.organism_classificationSuberites domunculaSpongeMonophylySpongillidaeSpongilla lacustrisEvolutionary biologyPolyphylyMolecular phylogeneticsGeneticsAnimal Science and ZoologyMolecular BiologyEcology Evolution Behavior and SystematicsJournal of Zoological Systematics and Evolutionary Research
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