0000000000261676

AUTHOR

Sadiel E. Ortega-broche

showing 2 related works from this author

Nucleotide's bilinear indices: Novel bio-macromolecular descriptors for bioinformatics studies of nucleic acids. I. Prediction of paromomycin's affin…

2009

A new set of nucleotide-based bio-macromolecular descriptors are presented. This novel approach to bio-macromolecular design from a linear algebra point of view is relevant to nucleic acids quantitative structure-activity relationship (QSAR) studies. These bio-macromolecular indices are based on the calculus of bilinear maps on Re(n)[b(mk)(x (m),y (m)):Re(n) x Re(n)--Re] in canonical basis. Nucleic acid's bilinear indices are calculated from kth power of non-stochastic and stochastic nucleotide's graph-theoretic electronic-contact matrices, M(m)(k) and (s)M(m)(k), respectively. That is to say, the kth non-stochastic and stochastic nucleic acid's bilinear indices are calculated using M(m)(k)…

Models MolecularStatistics and ProbabilityPure mathematicsQuantitative structure–activity relationshipParomomycinMolecular Sequence DataDNA FootprintingQuantitative Structure-Activity RelationshipBilinear interpolationGeneral Biochemistry Genetics and Molecular BiologyInterpretation (model theory)DNA PackagingLinear regressionOrder (group theory)MathematicsStochastic ProcessesBase SequenceGeneral Immunology and MicrobiologyApplied MathematicsComputational BiologyGeneral MedicineModeling and SimulationDNA ViralLinear algebraStandard basisHIV-1Nucleic acidRNA ViralGeneral Agricultural and Biological SciencesAlgorithmJournal of Theoretical Biology
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tomocomd-camps and protein bilinear indices - novel bio-macromolecular descriptors for protein research: I. Predicting protein stability effects of a…

2010

Descriptors calculated from a specific representation scheme encode only one part of the chemical information. For this reason, there is a need to construct novel graphical representations of proteins and novel protein descriptors that can provide new information about the structure of proteins. Here, a new set of protein descriptors based on computation of bilinear maps is presented. This novel approach to biomacromolecular design is relevant for QSPR studies on proteins. Protein bilinear indices are calculated from the kth power of nonstochastic and stochastic graph–theoretic electronic-contact matrices, and , respectively. That is to say, the kth nonstochastic and stochastic protein bili…

Quantitative structure–activity relationshipProtein structureLinear regressionStability (learning theory)Bilinear interpolationCell BiologySegmented regressionRepresentation (mathematics)Linear discriminant analysisBiological systemMolecular BiologyBiochemistryMathematicsFEBS Journal
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