0000000000277428
AUTHOR
Paulo C. Alves
showing 6 related works from this author
Adapted conservation measures are required to save the Iberian lynx in a changing climate
2013
The Iberian lynx ( Lynx pardinus ) has suffered severe population declines in the twentieth century and is now on the brink of extinction 1 . Climate change could further threaten the survival of the species 2 , but its forecast effects are being neglected in recovery plans 3,4 . Quantitative estimates of extinction risk under climate change have so far mostly relied on inferences from correlative projections of species’ habitat shifts 5 . Here we use ecological niche models coupled to metapopulation simulations with source–sink dynamics 6,7 to directly investi- gate the combined effects of climate change, prey availabil- ity and management intervention on the persistence of the Iberian lyn…
Molecular and ecological signs of mitochondrial adaptation: consequences for introgression?
2013
The evolution of the mitochondrial genome and its potential adaptive impact still generates vital debates. Even if mitochondria have a crucial functional role, as they are the main cellular energy suppliers, mitochondrial DNA (mtDNA) introgression is common in nature, introducing variation in populations upon which selection may act. Here we evaluated whether the evolution of mtDNA in a rodent species affected by mtDNA introgression is explained by neutral expectations alone. Variation in one mitochondrial and six nuclear markers in Myodes glareolus voles was examined, including populations that show mtDNA introgression from its close relative, Myodes rutilus. In addition, we modelled prote…
Introgression of mitochondrial DNA among Myodes voles: consequences for energetics?
2011
Abstract Background Introgression of mitochondrial DNA (mtDNA) is among the most frequently described cases of reticulate evolution. The tendency of mtDNA to cross interspecific barriers is somewhat counter-intuitive considering the key function of enzymes that it encodes in the oxidative-phosphorylation process, which could give rise to hybrid dysfunction. How mtDNA reticulation affects the evolution of metabolic functions is, however, uncertain. Here we investigated how morpho-physiological traits vary in natural populations of a common rodent (the bank vole, Myodes glareolus) and whether this variation could be associated with mtDNA introgression. First, we confirmed that M. glareolus ha…
The era of reference genomes in conservation genomics
2022
Progress in genome sequencing now enables the large-scale generation of reference genomes. Various international initiatives aim to generate reference genomes representing global biodiversity. These genomes provide unique insights into genomic diversity and architecture, thereby enabling comprehensive analyses of population and functional genomics, and are expected to revolutionize conservation genomics.
Genetic structure of wildcat (Felis silvestris) populations in Italy
2013
Severe climatic changes during the Pleistocene shaped the distributions of temperate-adapted species. These species survived glaciations in classical southern refuges with more temperate climates, as well as in western and eastern peripheral Alpine temperate areas. We hypothesized that the European wildcat (Felis silvestris silvestris) populations currently distributed in Italy differentiated in, and expanded from two distinct glacial refuges, located in the southern Apennines and at the periphery of the eastern Alps. This hypothesis was tested by genotyping 235 presumed European wildcats using a panel of 35 domestic cat-derived microsatellites. To provide support and controls for the analy…
Evolutionary history of two cryptic species of northern African jerboas
2020
Abstract Background: Climatic variation and geologic change both play significant roles in shaping species distributions, thus affecting their evolutionary history. In Sahara-Sahel, climatic oscillations shifted the desert extent during the Pliocene-Pleistocene interval, triggering the diversification of several species. Here, we investigated how these biogeographical and ecological events have shaped patterns of genetic diversity and divergence in African Jerboas, desert specialist rodents. We focused on two sister and cryptic species, Jaculus jaculus and J. hirtipes, where we (1) evaluated their genetic differentiation, (2) reconstructed their evolutionary and demographic history; (3) tes…