0000000000300128

AUTHOR

Jon Atherton

0000-0002-7670-2928

showing 7 related works from this author

Linking chlorophyll a fluorescence to photosynthesis for remote sensing applications: mechanisms and challenges

2014

Chlorophyll a fluorescence (ChlF) has been used for decades to study the organization, functioning, and physiology of photosynthesis at the leaf and subcellular levels. ChlF is now measurable from remote sensing platforms. This provides a new optical means to track photosynthesis and gross primary productivity of terrestrial ecosystems. Importantly, the spatiotemporal and methodological context of the new applications is dramatically different compared with most of the available ChlF literature, which raises a number of important considerations. Although we have a good mechanistic understanding of the processes that control the ChlF signal over the short term, the seasonal link between ChlF…

ChlorophyllChlorophyll aMETIS-306570PhysiologyRemote sensing applicationEcologyChlorophyll AContext (language use)Plant ScienceBiologyPhotochemical Reflectance IndexPhotosynthesisFluorescencePlant Leaveschemistry.chemical_compoundchemistryITC-ISI-JOURNAL-ARTICLEPhotosynthetic acclimationRemote Sensing TechnologyThylakoid membrane organizationBiomassSeasonsPhotosynthesisBiological systemChlorophyll fluorescenceJournal of Experimental Botany
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Beyond APAR and NPQ: Factors Coupling and Decoupling SIF and GPP Across Scales

2021

The connection between solar-induced fluorescence (SIF) and vegetation gross primary productivity is being widely investigated across spatial, temporal, and biological scales, including: a) studies at the leaf [1], [2], plant canopy [2]–[4] or satellite pixel scale [5], [6], b) temporally with studies spanning from diurnal [7] to seasonal scales [1], [3], [5], and b) biologically with studies covering various plant functional types (PFTs), e.g., crops [4], [7], deciduous [8] or evergreen forests [1], [3], in response to different sources of stress.

010504 meteorology & atmospheric sciences0211 other engineering and technologies02 engineering and technologyVegetationDecoupling (cosmology)15. Life on landEvergreenAtmospheric sciences01 natural sciencesGross primary productivityDeciduousPlant canopy021101 geological & geomatics engineering0105 earth and related environmental sciencesMathematics2021 IEEE International Geoscience and Remote Sensing Symposium IGARSS
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Leaf-Level Spectral Fluorescence Measurements : Comparing Methodologies for Broadleaves and Needles

2019

Successful measurements of chlorophyll fluorescence (ChlF) spectral properties (typically in the wavelength range of 650–850 nm) across plant species, environmental conditions, and stress levels are a first step towards establishing a quantitative link between solar-induced chlorophyll fluorescence (SIF), which can only be measured at discrete ChlF spectral bands, and photosynthetic functionality. Despite its importance and significance, the various methodologies for the estimation of leaf-level ChlF spectral properties have not yet been compared, especially when applied to leaves with complex morphology, such as needles. Here we present, to the best of our knowledge, a first comparison of …

0106 biological sciencesCorrection methodMaterials science010504 meteorology & atmospheric sciencesSciencesun-induced fluorescenceAnalytical chemistryleaf morphology01 natural sciencesSpectral lineFluoWatlingonberryLEAVESChlorophyll fluorescence0105 earth and related environmental sciences4112 Forestryphotosynthesischlorophyll fluorescencesilver birchQSpectral propertiesSpectral bandsOPTICAL-PROPERTIESA FLUORESCENCECANOPY-LEVELFluorescencebaseline correctionRATIO F690/F730Integrating sphereLIGHTPHOTOSYSTEM-IPlant speciesScots pineINDUCED CHLOROPHYLL FLUORESCENCEMINIMIZING MEASUREMENT UNCERTAINTIESREVISED MEASUREMENT METHODOLOGYGeneral Earth and Planetary Sciencesbaseline correction; chlorophyll fluorescence; FluoWat; leaf morphology; lingonberry; photosynthesis; Scots pine; silver birch; sun-induced fluorescence010606 plant biology & botany
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Chlorophyll a fluorescence illuminates a path connecting plant molecular biology to Earth-system science

2021

Remote sensing methods enable detection of solar-induced chlorophyll a fluorescence. However, to unleash the full potential of this signal, intensive cross-disciplinary work is required to harmonize biophysical and ecophysiological studies. For decades, the dynamic nature of chlorophyll a fluorescence (ChlaF) has provided insight into the biophysics and ecophysiology of the light reactions of photosynthesis from the subcellular to leaf scales. Recent advances in remote sensing methods enable detection of ChlaF induced by sunlight across a range of larger scales, from using instruments mounted on towers above plant canopies to Earth-orbiting satellites. This signal is referred to as solar-in…

0106 biological sciencesklorofylliChlorophyll a010504 meteorology & atmospheric sciencesEarth scienceEcology (disciplines)Plant Scienceekofysiologia01 natural sciencesFluorescencebiofysiikkayhteyttäminenchemistry.chemical_compoundLEAFLEAVESWATERPhotosynthesisCO2 ASSIMILATIONSCOTS PINE[SDU.ENVI]Sciences of the Universe [physics]/Continental interfaces environmentMolecular Biology0105 earth and related environmental sciences[SDU.OCEAN]Sciences of the Universe [physics]/Ocean AtmosphereChlorophyll ASUN-INDUCED FLUORESCENCEfluoresenssiBiogeochemistrykasvillisuus15. Life on land11831 Plant biologyReflectivityREFLECTANCEPlant LeavesEarth system scienceddc:580RESOLUTIONchemistryPHOTOSYSTEM-I13. Climate actionRemote Sensing TechnologyEarth SciencessatelliittikuvausEnvironmental sciencekaukokartoitus010606 plant biology & botanyNature Plants
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UV-screening and springtime recovery of photosynthetic capacity in leaves of Vaccinium vitis-idaea above and below the snow pack

2019

International audience; Evergreen plants in boreal biomes undergo seasonal hardening and dehardening adjusting their photosynthetic capacity and photoprotection; acclimating to seasonal changes in temperature and irradiance. Leaf epidermal ultraviolet (UV)-screening by flavonols responds to solar radiation, perceived in part through increased ultraviolet-B (UV-B) radiation, and is a candidate trait to provide cross-photoprotection. At Hyytiälä Forestry Station, central Finland, we examined whether the accumulation of flavonols was higher in leaves of Vaccinium vitis-idaea L. growing above the snowpack compared with those below the snowpack. We found that leaves exposed to colder temperature…

0106 biological sciences0301 basic medicineTime FactorsPhotoinhibitionBOREALPhysiologyPlant ScienceForests01 natural sciencesPlant EpidermisAnthocyaninsSoilFlavonolsLOW-TEMPERATURESnowPhotosynthesis1183 Plant biology microbiology virologychemistry.chemical_classificationspring dehardening.CLIMATE-CHANGEbiologyChemistryTemperatureUnderstoreyHorticultureLIGHTSeasonsVacciniumUltraviolet RaysGrowing seasonPhotosynthesisDWARF SHRUB03 medical and health sciencesLEAFPHOTOSYSTEM-IIGenetics[SDV.BV]Life Sciences [q-bio]/Vegetal BiologyVaccinium vitis-idaeaFlavonoidsSpring dehardeningPhotoprotectionSpectral qualityPhotosystem II Protein ComplexPigments Biological15. Life on landEvergreenbiology.organism_classificationPhotosynthetic capacitySUB-ARCTIC HEATHPlant Leaves030104 developmental biology13. Climate actionPhotoprotectionWINTERB RADIATIONArctic browning010606 plant biology & botany
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Spatial Variation of Leaf Optical Properties in a Boreal Forest Is Influenced by Species and Light Environment

2017

Leaf Optical Properties (LOPs) convey information relating to temporally dynamic photosynthetic activity and biochemistry. LOPs are also sensitive to variability in anatomically related traits such as Specific Leaf Area (SLA), via the interplay of intra-leaf light scattering and absorption processes. Therefore, variability in such traits, which may demonstrate little plasticity over time, potentially disrupts remote sensing estimates of photosynthesis or biochemistry across space. To help to disentangle the various factors that contribute to the variability of LOPs, we defined baseline variation as variation in LOPs that occurs across space, but not time. Next we hypothesized that there wer…

0106 biological sciencesCanopyPIGMENT010504 meteorology & atmospheric sciencesSpecific leaf areaPlant SciencePhotochemical Reflectance IndexAtmospheric sciences01 natural sciencesleaf optical propertiesPHOTOCHEMICAL REFLECTANCE INDEXCANOPYLEAVESCHLOROPHYLL FLUORESCENCE EMISSIONNITROGEN-CONTENTSCOTS PINEChlorophyll fluorescenceOriginal ResearchCONIFER NEEDLES0105 earth and related environmental sciences4112 Forestryphotosynthesischlorophyll fluorescencebiologyEcologyTaigaScots pine15. Life on landbiology.organism_classificationDECIDUOUS FORESTbaselineBoreal13. Climate actionEnvironmental scienceSpatial variabilityPRI010606 plant biology & botanyFrontiers in Plant Science
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Diurnal and Seasonal Solar Induced Chlorophyll Fluorescence and Photosynthesis in a Boreal Scots Pine Canopy

2019

Solar induced chlorophyll fluorescence has been shown to be increasingly an useful proxy for the estimation of gross primary productivity (GPP), at a range of spatial scales. Here, we explore the seasonality in a continuous time series of canopy solar induced fluorescence (hereafter SiF) and its relation to canopy gross primary production (GPP), canopy light use efficiency (LUE), and direct estimates of leaf level photochemical efficiency in an evergreen canopy. SiF was calculated using infilling in two bands from the incoming and reflected radiance using a pair of Ocean Optics USB2000+ spectrometers operated in a dual field of view mode, sampling at a 30 min time step using custom written …

Canopy010504 meteorology & atmospheric sciencesRETRIEVAL0211 other engineering and technologiesEddy covarianceBoreal ecosystemlight-use efficiency (LUE)02 engineering and technologyAtmospheric sciencesPhotochemical Reflectance Index01 natural sciencesNormalized Difference Vegetation Indexseasonal dynamicsPHOTOSYSTEM-IIPHOTOCHEMICAL REFLECTANCE INDEXDiurnal cyclephotosynthetic efficiencySPECTROMETERFIELDWATER-STRESSlcsh:ScienceTEMPERATUREconiferous forest021101 geological & geomatics engineering0105 earth and related environmental sciencessolar-induced chlorophyll fluorescence (SiF); seasonal dynamics; photosynthetic efficiency; proximal remote sensing; coniferous forest; gross primary productivity (GPP); light-use efficiency (LUE); Fraunhofer Line Discriminator (FLD); flux tower4112 Forestrygross primary productivity (GPP)SUN-INDUCED FLUORESCENCEPrimary productionGROSS PRIMARY PRODUCTIONsolar-induced chlorophyll fluorescence (SiF)15. Life on landproximal remote sensing13. Climate actionLIGHT-USE EFFICIENCYRadianceGeneral Earth and Planetary SciencesEnvironmental sciencelcsh:QFraunhofer Line Discriminator (FLD)flux towerRemote Sensing; Volume 11; Issue 3; Pages: 273
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