0000000000305663

AUTHOR

Bernd Timmermann

showing 3 related works from this author

The Developmental Transcriptome for Lytechinus variegatus Exhibits Temporally Punctuated Gene Expression Changes

2019

AbstractEmbryonic development is arguably the most complex process an organism undergoes during its lifetime, and understanding this complexity is best approached with a systems-level perspective. The sea urchin has become a highly valuable model organism for understanding developmental specification, morphogenesis, and evolution. As a non-chordate deuterostome, the sea urchin occupies an important evolutionary niche between protostomes and vertebrates.Lytechinus variegatus(Lv) is an Atlantic species that has been well studied, and which has provided important insights into signal transduction, patterning, and morphogenetic changes during embryonic and larval development. The Pacific specie…

ved/biology.organism_classification_rank.speciesGene regulatory networkMorphogenesisRNA-SeqTranscriptome03 medical and health sciences0302 clinical medicineLytechinusbiology.animalAnimalsGene Regulatory NetworksModel organismStrongylocentrotus purpuratusMolecular BiologySea urchin030304 developmental biologyLytechinus variegatus0303 health sciencesDeuterostomebiologyved/biologyurogenital systemGene Expression Regulation DevelopmentalCell Biologybiology.organism_classificationStrongylocentrotus purpuratusEvolutionary biologyembryonic structuresTranscriptome030217 neurology & neurosurgeryDevelopmental Biology
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Mitigating anticipated effects of systematic errors supports sister-group relationship between Xenacoelomorpha and Ambulacraria.

2019

International audience; Xenoturbella and the acoelomorph worms (Xenacoelomorpha) are simple marine animals with controversial affinities. They have been placed as the sister group of all other bilaterian animals (Nephrozoa hypothesis), implying their simplicity is an ancient characteristic ]; alternatively, they have been linked to the complex Ambulacraria (echinoderms and hemichordates) in a clade called the Xenambulacraria , suggesting their simplicity evolved by reduction from a complex ancestor. The difficulty resolving this problem implies the phylogenetic signal supporting the correct solution is weak and affected by inadequate modeling, creating a misleading non-phylogenetic signal. …

0301 basic medicineXenoturbellaAmbulacrariamedia_common.quotation_subjectAcoelomorpha ; Ambulacraria ; Metazoa ; Nephrozoa ; Phylogenomics ; Phylogeny ; Systematic Error ; XenoturbellaNephrozoaContext (language use)phylogeny[SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics Phylogenetics and taxonomyGeneral Biochemistry Genetics and Molecular Biologysystematic error03 medical and health sciences0302 clinical medicineXenoturbellaAnimalsSimplicityAmbulacrariaChordatamedia_commonLong branch attractionbiologyMetazoa[SDV.BID.EVO]Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE]Acoelomorphaphylogenomicsbiology.organism_classificationBiological EvolutionInvertebratesXenacoelomorpha[SDV.BA.ZI]Life Sciences [q-bio]/Animal biology/Invertebrate Zoology030104 developmental biologySister groupEvolutionary biologyOutgroupGeneral Agricultural and Biological Sciences030217 neurology & neurosurgeryEchinodermata
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Classic bladder exstrophy: Frequent 22q11.21 duplications and definition of a 414 kb phenocritical region

2014

Background: Classic bladder exstrophy (CBE) is the most common form of the bladder exstrophy and epispadias complex. Previously, we and others have identified four patients with a duplication of 22q11.21 among a total of 96 unrelated CBE patients. Methods: Here, we investigated whether this chromosomal aberration was commonly associated with CBE/bladder exstrophy and epispadias complex in an extended case-control sample. Multiplex ligation-dependent probe amplification and microarray-based analysis were used to identify 22q11.21 duplications in 244 unrelated bladder exstrophy and epispadias complex patients (including 217 CBE patients) and 665 healthy controls. Results: New duplications of …

GeneticsEmbryologyCandidate geneMicroarrayBreakpointGeneral MedicineEpispadiasBiologymedicine.diseaseBladder exstrophyPediatrics Perinatology and Child HealthGene duplicationRefSeqmedicineCopy-number variationDevelopmental BiologyBirth Defects Research Part A: Clinical and Molecular Teratology
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