0000000000323533

AUTHOR

Alexander Witek

showing 6 related works from this author

Phylogenetic analyses of endoparasitic Acanthocephala based on mitochondrial genomes suggest secondary loss of sensory organs

2012

The metazoan taxon Syndermata (Monogononta, Bdelloidea, Seisonidea, Acanthocephala) comprises species with vastly different lifestyles. The focus of this study is on the phylogeny within the syndermatan subtaxon Acanthocephala (thorny-headed worms, obligate endoparasites). In order to investigate the controversially discussed phylogenetic relationships of acanthocephalan subtaxa we have sequenced the mitochondrial (mt) genomes of Echinorhynchus truttae (Palaeacanthocephala), Paratenuisentis ambiguus (Eoacanthocephala), Macracanthorhynchus hirudinaceus (Archiacanthocephala), and Philodina citrina (Bdelloidea). In doing so, we present the largest molecular phylogenetic dataset so far for this…

Likelihood FunctionsbiologySense OrgansPalaeacanthocephalaZoologyBayes TheoremSequence Analysis DNAArchiacanthocephalabiology.organism_classificationBiological EvolutionDNA MitochondrialAcanthocephalaMonophylySister groupPhylogeneticsGene OrderGenome MitochondrialGeneticsAnimalsBdelloideaEoacanthocephalaAcanthocephalaMolecular BiologyPhylogenyEcology Evolution Behavior and SystematicsMolecular Phylogenetics and Evolution
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Support for the monophyletic origin of Gnathifera from phylogenomics

2009

The monophyletic origin of Spiralia within the metazoan tree of life is supported by many large-scale phylogenomic data. While there is now substantial molecular evidence for Lophotrochozoa being a monophyletic taxon within Spiralia, the phylogenetic affiliations of many other spiralian phyla remain unclear. Here we focus on the question of a monophyletic taxon Gnathifera, which was originally characterized by jaw morphology as comprising the taxa Rotifera, Acanthocephala and Gnathostomulida. Based on a large-scale molecular sequence dataset of 11,146 amino acid residues, we reconstructed phylogenetic trees of spiralian phyla using maximum-likelihood and Bayesian approaches. We obtain the f…

Ribosomal ProteinsParaphylyLikelihood FunctionsModels GeneticbiologyRotiferaLophotrochozoaZoologyBayes TheoremGenomicsbiology.organism_classificationEvolution MolecularMonophylyTaxonSequence Analysis ProteinPhylogenomicsGeneticsGnathiferaAnimalsSpiraliaCladeSequence AlignmentMolecular BiologyPhylogenyEcology Evolution Behavior and SystematicsMolecular Phylogenetics and Evolution
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EST based phylogenomics of Syndermata questions monophyly of Eurotatoria

2008

Abstract Background The metazoan taxon Syndermata comprising Rotifera (in the classical sense of Monogononta+Bdelloidea+Seisonidea) and Acanthocephala has raised several hypotheses connected to the phylogeny of these animal groups and the included subtaxa. While the monophyletic origin of Syndermata and Acanthocephala is well established based on morphological and molecular data, the phylogenetic position of Syndermata within Spiralia, the monophyletic origin of Monogononta, Bdelloidea, and Seisonidea and the acanthocephalan sister group are still a matter of debate. The comparison of the alternative hypotheses suggests that testing the phylogenetic validity of Eurotatoria (Monogononta+Bdel…

0106 biological sciencesCharacter evolutionEvolutionRotiferaZoologyBiology010603 evolutionary biology01 natural sciencesAcanthocephalaEvolution Molecular03 medical and health sciencesMonophylyPhylogeneticsHelminthsQH359-425RNA Ribosomal 18SAnimalsBdelloideaPhylogenyEcology Evolution Behavior and Systematics030304 developmental biologyExpressed Sequence Tags0303 health sciencesPhylogenetic treeSyndermata; phylogenetic positionGenomicsSequence Analysis DNADNA Helminthbiology.organism_classificationGenetics PopulationSister groupPlatyhelminthsEvolutionary biologyMolecular phylogeneticsAcanthocephalaResearch ArticleBMC Evolutionary Biology
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Selecting ribosomal protein genes for invertebrate phylogenetic inferences: how many genes to resolve the Mollusca?

2010

Summary 1. Multi-gene analyses are currently the gold standard in phylogenetics, despite limited taxon sampling. To facilitate broad taxon representation on an economically tolerable level, we optimize the gene selection for future PCR-based sampling strategies. 2. Highly expressed ribosomal proteins (RP) were sampled chiefly for molluscs, the second largest metazoan phylum with largely unknown internal relationships. Thirty-two new sequences for Lepidochitona cinerea (Polyplacophora) were integrated into a data-matrix of 79 RP genes, comprising 16 mollusc species (five classes). The resulting maximum likelihood tree was used to evaluate each single-gene tree according to its topological fi…

MonophylyPaleontologyPolyplacophoraTaxonPhylogenetic treeEvolutionary biologyPhylumPhylogeneticsEcological ModelingPhylogenomicsBiologyRibosomal RNAEcology Evolution Behavior and SystematicsMethods in Ecology and Evolution
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Spiralian phylogenomics supports the resurrection of Bryozoa comprising Ectoprocta and Entoprocta.

2007

Phylogenetic analyses based on 79 ribosomal proteins of 38 metazoans, partly derived from 6 new expressed sequence tag projects for Ectoprocta, Entoprocta, Sipuncula, Annelida, and Acanthocephala, indicate the monophyly of Bryozoa comprising Ectoprocta and Entoprocta, 2 taxa that have been separated for more than a century based on seemingly profound morphological differences. Our results also show that bryozoans are more closely related to Neotrochozoa, including molluscs and annelids, than to Syndermata, the latter comprising Rotifera and Acanthocephala. Furthermore, we find evidence for the position of Sipuncula within Annelida. These findings suggest that classical developmental and mor…

SipunculabiologyEntoproctaModels GeneticAnnelidaAnatomyGenomicsbiology.organism_classificationBryozoaMonophylyEvolutionary biologyPhylogeneticsPlatyhelminthsPhylogenomicsGeneticsBryozoaAnimalsSpiraliaAcanthocephalaMolecular BiologyEcology Evolution Behavior and SystematicsPhylogenyMolecular biology and evolution
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Transcriptome data reveal syndermatan relationships and suggest the evolution of endoparasitism in acanthocephala via an epizoic stage

2014

The taxon Syndermata comprises the biologically interesting wheel animals ("Rotifera": Bdelloidea + Monogononta + Seisonidea) and thorny-headed worms (Acanthocephala), and is central for testing superordinate phylogenetic hypotheses (Platyzoa, Gnathifera) in the metazoan tree of life. Recent analyses of syndermatan phylogeny suggested paraphyly of Eurotatoria (free-living bdelloids and monogononts) with respect to endoparasitic acanthocephalans. Data of epizoic seisonids, however, were absent, which may have affected the branching order within the syndermatan clade. Moreover, the position of Seisonidea within Syndermata should help in understanding the evolution of acanthocephalan endoparas…

Animal EvolutionScienceMolecular Sequence DataRotiferaAnimal PhylogeneticsTranscriptomesAcanthocephala570 Life sciencesGenome Analysis Toolsddc:570GeneticsAnimalsEvolutionary SystematicsParasitesBiologyPhylogenyTaxonomyEvolutionary BiologyLife Cycle StagesQRComputational BiologyGenomicsBiological EvolutionOrganismal EvolutionPhylogeneticsAnimal TaxonomyMedicineTranscriptomeAnimal GeneticsZoologyResearch Article570 Biowissenschaften
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