0000000000342014

AUTHOR

Benjamin Rieger

showing 3 related works from this author

How challenging RADseq data turned out to favor coalescent-based species tree inference. A case study in Aichryson (Crassulaceae)

2022

Analysing multiple genomic regions while incorporating detection and qualification of discordance among regions has become standard for understanding phylogenetic relationships. In plants, which usually have comparatively large genomes, this is feasible by the combination of reduced-representation library (RRL) methods and high-throughput sequencing enabling the cost effective acquisition of genomic data for thousands of loci from hundreds of samples. One popular RRL method is RADseq. A major disadvantage of established RADseq approaches is the rather short fragment and sequencing range, leading to loci of little individual phylogenetic information. This issue hampers the application of coa…

0106 biological sciences570clustering threshold selectionInferenceLocus (genetics)Computational biologyBiologyCrassulaceaedata bias010603 evolutionary biology01 natural sciencesGenomeCoalescent theoryspecies tree inference03 medical and health scienceslocus filteringGeneticscoalescent-based summary methodCluster analysisMolecular BiologyEcology Evolution Behavior and SystematicsSelection (genetic algorithm)Phylogeny030304 developmental biology0303 health sciencesGenomePhylogenetic treeHigh-Throughput Nucleotide SequencingGenomicsRADseq500 Naturwissenschaften und Mathematik::570 Biowissenschaften; Biologie::570 Biowissenschaften; BiologieTree (data structure)
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Ancestry and demography and descendants of Iron Age nomads of the Eurasian Steppe

2017

During the 1st millennium before the Common Era (BCE), nomadic tribes associated with the Iron Age Scythian culture spread over the Eurasian Steppe, covering a territory of more than 3,500 km in breadth. To understand the demographic processes behind the spread of the Scythian culture, we analysed genomic data from eight individuals and a mitochondrial dataset of 96 individuals originating in eastern and western parts of the Eurasian Steppe. Genomic inference reveals that Scythians in the east and the west of the steppe zone can best be described as a mixture of Yamnaya-related ancestry and an East Asian component. Demographic modelling suggests independent origins for eastern and western g…

Gene FlowMale0301 basic medicineSteppePopulation geneticsHuman MigrationGenomic dataBiological anthropologyScience[SHS.ANTHRO-BIO]Humanities and Social Sciences/Biological anthropologyDatasets as TopicGeneral Physics and AstronomyDNA MitochondrialWhite PeopleArticleGeneral Biochemistry Genetics and Molecular BiologyRussia03 medical and health sciencesAsian Peopleddc:590HumansEast AsiaHistory AncientTransients and MigrantsModels StatisticalMultidisciplinarygeography.geographical_feature_categoryHuman migrationbusiness.industryQGenetic VariationGeneral ChemistryGrasslandKazakhstan030104 developmental biologyGeographyIron AgeEthnologybusiness
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Transcriptome data reveal syndermatan relationships and suggest the evolution of endoparasitism in acanthocephala via an epizoic stage

2014

The taxon Syndermata comprises the biologically interesting wheel animals ("Rotifera": Bdelloidea + Monogononta + Seisonidea) and thorny-headed worms (Acanthocephala), and is central for testing superordinate phylogenetic hypotheses (Platyzoa, Gnathifera) in the metazoan tree of life. Recent analyses of syndermatan phylogeny suggested paraphyly of Eurotatoria (free-living bdelloids and monogononts) with respect to endoparasitic acanthocephalans. Data of epizoic seisonids, however, were absent, which may have affected the branching order within the syndermatan clade. Moreover, the position of Seisonidea within Syndermata should help in understanding the evolution of acanthocephalan endoparas…

Animal EvolutionScienceMolecular Sequence DataRotiferaAnimal PhylogeneticsTranscriptomesAcanthocephala570 Life sciencesGenome Analysis Toolsddc:570GeneticsAnimalsEvolutionary SystematicsParasitesBiologyPhylogenyTaxonomyEvolutionary BiologyLife Cycle StagesQRComputational BiologyGenomicsBiological EvolutionOrganismal EvolutionPhylogeneticsAnimal TaxonomyMedicineTranscriptomeAnimal GeneticsZoologyResearch Article570 Biowissenschaften
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