0000000000356836

AUTHOR

Peter De Knijff

showing 3 related works from this author

Ten millennia of hepatitis B virus evolution

2021

Hepatitis B virus (HBV) has been infecting humans for millennia and remains a global health problem, but its past diversity and dispersal routes are largely unknown. We generated HBV genomic data from 137 Eurasians and Native Americans dated between ~10,500 and ~400 years ago. We date the most recent common ancestor of all HBV lineages to between ~20,000 and 12,000 years ago, with the virus present in European and South American hunter-gatherers during the early Holocene. After the European Neolithic transition, Mesolithic HBV strains were replaced by a lineage likely disseminated by early farmers that prevailed throughout western Eurasia for ~4000 years, declining around the end of the 2nd…

Phylogeographic historyHepatitis B/history01 natural sciencesThe RepublicCommunicable Diseases EmergingGermanCommunicable Diseases Emerging/historyAgency (sociology)Science and technologyComputingMilieux_MISCELLANEOUSHistory AncientPhylogenymedia_common0303 health sciencesMultidisciplinaryAncient DNAEuropean researchvirus diseasesGenomicsHepatitis B3. Good healthEuropelanguageComputingMethodologies_DOCUMENTANDTEXTPROCESSINGChristian ministryPaleogenomic analysesAsian Continental Ancestry Group010506 paleontologyHepatitis B virusAsiaHepatitis B virus/classificationEuropean Continental Ancestry GroupLibrary scienceBiología CelularWhite PeopleMarie curieEvolution Molecular03 medical and health sciencesAmerican NativesAsian PeoplePolitical scienceGenomic datamedia_common.cataloged_instanceHumansSlovakEuropean unionAmerican Indian or Alaska Native030304 developmental biology0105 earth and related environmental sciencesGenetic VariationPaleontologyPrehistoriaA300language.human_languagedigestive system diseasesAmerican natives; Americas; Asia; Asian continental ancestry group; Communicable diseases Emerging; Europe; European continental ancestry group; Evolution molecular; Genetic variation; Genomics; Hepatitis B; Hepatitis B virus; History Ancient; Humans; Paleontology; PhylogenyAmericas
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The beaker phenomenon and the Genomic transformations of Northwest Europe

2018

Bell Beaker pottery spread across western and central Europe beginning around 2750 BCE before disappearing between 2200–1800 BCE. The mechanism of its expansion is a topic of long-standing debate, with support for both cultural diffusion and human migration. We present new genome-wide ancient DNA data from 170 Neolithic, Copper Age and Bronze Age Europeans, including 100 Beaker-associated individuals. In contrast to the Corded Ware Complex, which has previously been identified as arriving in central Europe following migration from the east, we observe limited genetic affinity between Iberian and central European Beaker Complex-associated individuals, and thus exclude migration as a signific…

Male0301 basic medicineSteppeADNNéolithiqueBell BeakerArqueologiaBell Beaker culturegenome wide ancient DNA0302 clinical medicineArchéologiePhenomenonddc:5500601 history and archaeologySuisseHistory Ancient0303 health scienceseducation.field_of_studygeography.geographical_feature_categoryMultidisciplinary060102 archaeology[SDE.IE]Environmental Sciences/Environmental EngineeringHuman migrationPréhistoireNeolithic periodGene PoolGenomics[SHS.GEO]Humanities and Social Sciences/Geography06 humanities and the artsbell BeakerEuropeGeographyArchaeologyCeràmicaEthnologyMégalithisme1000ArchaeogeneticsCampaniformePotteryHuman Migration[SDE.MCG]Environmental Sciences/Global ChangesPopulationAncient historyArticle03 medical and health sciencesSpatio-Temporal Analysispopular geneticsBronze AgeBeakerCultural EvolutionNeolíticgenomicsHumansDNA Ancienteducation030304 developmental biologyChromosomes Human YGenome Humanbusiness.industryNorthwest Europebell Beaker; genome wide ancient DNA; EuropeChalcolithic[SDE.ES]Environmental Sciences/Environmental and SocietyAncient DNAGenetics Population030104 developmental biologyHaplotypesPeriod (geology)GenomicPottery[SDE.BE]Environmental Sciences/Biodiversity and Ecologybusiness030217 neurology & neurosurgery
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STR analysis of artificially degraded DNA--results of a collaborative European exercise.

2003

Degradation of human DNA extracted from forensic stains is, in most cases, the result of a natural process due to the exposure of the stain samples to the environment. Experiences with degraded DNA from casework samples show that every sample may exhibit different properties in this respect, and that it is difficult to systematically assess the performance of routinely used typing systems for the analysis of degraded DNA samples. Using a batch of artificially degraded DNA with an average fragment size of approx. 200 bp a collaborative exercise was carried out among 38 forensic laboratories from 17 European countries. The results were assessed according to correct allele detection, peak heig…

DNA FragmentationBiologyPolymerase Chain ReactionPathology and Forensic Medicinelaw.inventionchemistry.chemical_compoundlawGenotypeHumansCooperative BehaviorAlleleAllelesPolymerase chain reactionGeneticsClinical Laboratory TechniquesDNADNA FingerprintingEuropeSTR analysisDNA profilingchemistryTandem Repeat SequencesMicrosatelliteLawDNATaq polymerase
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