0000000000432753
AUTHOR
Joan Massich
Automatic Seed Placement for Breast Lesion Segmentation on US Images
Breast lesion boundaries have been mostly extracted by using conventional approaches as a previous step in the development of computer-aided diagnosis systems. Among these, region growing is a frequently used segmentation method. To make the segmentation completely automatic, most of the region growing methods incorporate automatic selection of the seed points. This paper proposes a new automatic seed placement algorithm for breast lesion segmentation on ultrasound images by means of assigning the probability of belonging to a lesion for every pixel depending on intensity, texture and geometrical constraints. The proposal has been evaluated using a set of sonographic breast images with acco…
Wood fiber orientation assessment based on punctual laser beam excitation: A preliminary study
International audience; The EU imposes standards for the use of wood in structural applications. Local singularities such as knots affect the wood mechanical properties. They can be revealed by looking at the wood fiber orientation. For this reason, many methods were proposed to estimate the orientation of wood fiber using optical means, X-rays, or scattering measurement techniques. In this paper, an approach to assess the wood fiber orientation based on thermal ellipsometry is developed. The wood part is punctually heated with a Nd-YAG Laser and the thermal response is acquired by an infrared camera. The thermal response is elliptical due to the propagation of the heat through and along th…
Classification of SD-OCT Volumes Using Local Binary Patterns: Experimental Validation for DME Detection
International audience; This paper addresses the problem of automatic classification of Spectral Domain OCT (SD-OCT) data for automatic identification of patients with Diabetic Macular Edema (DME) versus normal subjects. Optical Coherence Tomography (OCT) has been a valuable diagnostic tool for DME, which is among the most common causes of irreversible vision loss in individuals with diabetes. Here, a classification framework with five distinctive steps is proposed and we present an extensive study of each step. Our method considers combination of various pre-processings in conjunction with Local Binary Patterns (LBP) features and different mapping strategies. Using linear and non-linear cl…
Optical Flow with Theoretically Justified Warping Applied to Medical Imaging
International audience; Motion induced artifacts represent a major obstacle in the correct malignant lesion detection in medical imaging especially in MRI. The goal of this paper is to evaluate the performance of a new non-rigid motion correction algorithm based on the optical flow method. The proposed algorithm specifically addresses three major problems in MRI: the induced gaps in 3D images, the constancy assumption of current optical flow algorithms and the existence of large non-linear movement. In this paper, we compare the performance of extracted kinetic features from the tumor regions under consideration of several 2-D or 3-D motion compensation parameters for the differential diagn…
Tackling the Problem of Data Imbalancing for Melanoma Classification
Comunicació de congrés presentada a: 3rd International Conference on Bioimaging, BIOIMAGING 2016 - Part of 9th International Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC 2016, Roma, Italy Malignant melanoma is the most dangerous type of skin cancer, yet melanoma is the most treatable kind of cancer when diagnosed at an early stage. In this regard, Computer-Aided Diagnosis systems based on machine learning have been developed to discern melanoma lesions from benign and dysplastic nevi in dermoscopic images. Similar to a large range of real world applications encountered in machine learning, melanoma classification faces the challenge of imbalanced data, where …
SIFT Texture Description for Understanding Breast Ultrasound Images
Texture is a powerful cue for describing structures that show a high degree of similarity in their image intensity patterns. This paper describes the use of Self-Invariant Feature Transform (SIFT), both as low-level and high-level descriptors, applied to differentiate the tissues present in breast US images. For the low-level texture descriptors case, SIFT descriptors are extracted from a regular grid. The high-level texture descriptor is build as a Bag-of-Features (BoF) of SIFT descriptors. Experimental results are provided showing the validity of the proposed approach for describing the tissues in breast US images.
A boosting approach for prostate cancer detection using multi-parametric MRI
International audience; Prostate cancer has been reported as the second most frequently diagnosed men cancers in the world. In the last decades, new imaging techniques based on MRI have been developed in order to improve the diagnosis task of radiologists. In practise, diagnosis can be affected by multiple factors reducing the chance to detect potential lesions. Computer-aided detection and computer-aided diagnosis have been designed to answer to these needs and provide help to radiologists in their daily duties. In this study, we proposed an automatic method to detect prostate cancer from a per voxel manner using 3T multi-parametric Magnetic Resonance Imaging (MRI) and a gradient boosting …
Classification of Melanoma Lesions Using Sparse Coded Features and Random Forests
International audience; Malignant melanoma is the most dangerous type of skin cancer, yet it is the most treatable kind of cancer, conditioned by its early diagnosis which is a challenging task for clinicians and dermatologists. In this regard, CAD systems based on machine learning and image processing techniques are developed to differentiate melanoma lesions from benign and dysplastic nevi using dermoscopic images. Generally, these frameworks are composed of sequential processes: pre-processing, segmentation, and classification. This architecture faces mainly two challenges: (i) each process is complex with the need to tune a set of parameters, and is specific to a given dataset; (ii) the…
Breast Ultra-Sound image segmentation: an optimization approach based on super-pixels and high-level descriptors
International audience; Breast cancer is the second most common cancer and the leading cause of cancer death among women. Medical imaging has become an indispensable tool for its diagnosis and follow up. During the last decade, the medical community has promoted to incorporate Ultra-Sound (US) screening as part of the standard routine. The main reason for using US imaging is its capability to differentiate benign from malignant masses, when compared to other imaging techniques. The increasing usage of US imaging encourages the development of Computer Aided Diagnosis (CAD) systems applied to Breast Ultra-Sound (BUS) images. However accurate delineations of the lesions and structures of the b…
Normalization of T2W-MRI Prostate Images using Rician a priori
International audience; Prostate cancer is reported to be the second most frequently diagnosed cancer of men in the world. In practise, diagnosis can be affected by multiple factors which reduces the chance to detect the potential lesions. In the last decades, new imaging techniques mainly based on MRI are developed in conjunction with Computer-Aided Diagnosis (CAD) systems to help radiologists for such diagnosis. CAD systems are usually designed as a sequential process consisting of four stages: pre-processing, segmentation, registration and classification. As a pre-processing, image normalization is a critical and important step of the chain in order to design a robust classifier and over…
Classifying DME vs Normal SD-OCT volumes: A review
International audience; This article reviews the current state of automatic classification methodologies to identify Diabetic Macular Edema (DME) versus normal subjects based on Spectral Domain OCT (SD-OCT) data. Addressing this classification problem has valuable interest since early detection and treatment of DME play a major role to prevent eye adverse effects such as blindness. The main contribution of this article is to cover the lack of a public dataset and benchmark suited for classifying DME and normal SD-OCT volumes, providing our own implementation of the most relevant methodologies in the literature. Subsequently, 6 different methods were implemented and evaluated using this comm…
An optimization approach to segment breast lesions in ultra-sound images using clinically validated visual cues
International audience; As long as breast cancer remains the leading cause of cancer deaths among female population world wide, developing tools to assist radiologists during the diagnosis process is necessary. However, most of the technologies developed in the imaging laboratories are rarely integrated in this assessing process, as they are based on information cues differing from those used by clinicians. In order to grant Computer Aided Diagnosis (CAD) systems with these information cues when performing non-aided diagnosis, better segmentation strategies are needed to automatically produce accurate delineations of the breast structures. This paper proposes a highly modular and flexible f…
Classification of SD-OCT Volumes with LBP: Application to DME Detection
International audience; This paper addresses the problem of automatic classification of Spectral Domain OCT (SD-OCT) data for automatic identification of patients with Diabetic Macular Edema (DME) versus normal subjects. Our method is based on Local Binary Patterns (LBP) features to describe the texture of Optical Coherence Tomography (OCT) images and we compare different LBP features extraction approaches to compute a single signature for the whole OCT volume. Experimental results with two datasets of respectively 32 and 30 OCT volumes show that regardless of using low or high level representations, features derived from LBP texture have highly discriminative power. Moreover, the experimen…
Reflections about the integration of global challenges into higher education future programs: Application in the field of ICT security
The paper deals with focusing on EIE higher education to future European and global challenges. There are available many studies oriented to future challenges, future research methodologies and future intelligence systems, but what is evident, all of them report area of Information and Communication Technologies (ICT) as future challenge area. The Millenium project defined 15 Global Challenges assessing the global and local prospects for humanity. The European Commission also defined ICT as challenging area and divided the ICT into eight challenges of strategic interest to European society. All Member States of the EU are responsible for the organization of their education and training syst…
Lesion Segmentation in Breast Sonography
Sonography is gaining popularity as an adjunct screening technique for assessing abnormalities in the breast This is particularly true in cases where the subject has dense breast tissue, wherein widespread techniques like Digital Mammography (DM) fail to produce reliable outcomes This article proposes a novel and fully automatic methodology for breast lesion segmentation in B-mode Ultra-Sound (US) images by utilizing region, boundary and shape information to cope up with the inherent artifacts present in US images The proposed approach has been evaluated using a set of sonographic images with accompanying expert-provided ground truth.