0000000000448333

AUTHOR

Greger Larson

showing 7 related works from this author

Early cave art and ancient DNA record the origin of European bison

2016

The two living species of bison (European and American) are among the few terrestrial megafauna to have survived the late Pleistocene extinctions. Despite the extensive bovid fossil record in Eurasia, the evolutionary history of the European bison (or wisent, Bison bonasus) before the Holocene (<11.7 thousand years ago (kya)) remains a mystery. We use complete ancient mitochondrial genomes and genome-wide nuclear DNA surveys to reveal that the wisent is the product of hybridization between the extinct steppe bison (Bison priscus) and ancestors of modern cattle (aurochs, Bos primigenius) before 120 kya, and contains up to 10% aurochs genomic ancestry. Although undetected within the fossil re…

0301 basic medicineGeneral Physics and AstronomymegafaunaBison priscusMegafaunahybridizationBison bonasusComputingMilieux_MISCELLANEOUSHolocenePhylogenyMultidisciplinarygeography.geographical_feature_categoryGenomebiologyBisonFossilsQAmerican Bisonfossil recordMitochondrialPleistoceneEuropeCavesvisual_artSequence Analysis[SHS.ARCHEO]Humanities and Social Sciences/Archaeology and PrehistoryPleistoceneEvolutionLife on LandScienceBison Pleistocene fossil record mitochondrial genome hybridizationSocio-culturaleZoologySteppe bisonDNA MitochondrialArticleGeneral Biochemistry Genetics and Molecular BiologyAncientEvolution Molecular03 medical and health sciencesPaleontologyCaveGeneticsPleistocene extinctionsAnimalsDNA Ancientvisual_art.artworkCell NucleusgeographyHuman GenomeMolecularSequence Analysis DNAGeneral ChemistryDNAAurochsbiology.organism_classificationEurpoean BisonBos primigenius030104 developmental biologyAncient DNAmitochondrial genomeAmerican bisonGenome MitochondrialCommentaryCattlePaintings
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A population genetics view of animal domestication

2012

The fundamental shift associated with the domestication of plants and animals allowed for a dramatic increase in human population sizes and the emergence of modern society. Despite its importance and the decades of research devoted to studying it, questions regarding the origins and processes of domestication remain. Here, we review recent theoretical advances and present a perspective that underscores the crucial role that population admixture has played in influencing the genomes of domestic animals over the past 10000 years. We then discuss novel approaches to generating and analysing genetic data, emphasising the importance of an explicit hypothesis-testing approach for the inference of…

education.field_of_studyLivestockPopulationGenetic dataPopulation geneticsEnvironmental ethicsBiological evolutionBreedingPlantsBiologyBiological EvolutionGenetics PopulationAncient DNAEvolutionary biologyAnimals DomesticAdaptation PsychologicalGeneticsAnimalsHumansAdaptationDomesticationeducationTrends in Genetics
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Storytelling and story testing in domestication

2014

The domestication of plants and animals marks one of the most significant transitions in human, and indeed global, history. Traditionally, study of the domestication process was the exclusive domain of archaeologists and agricultural scientists; today it is an increasingly multidisciplinary enterprise that has come to involve the skills of evolutionary biologists and geneticists. Although the application of new information sources and methodologies has dramatically transformed our ability to study and understand domestication, it has also generated increasingly large and complex datasets, the interpretation of which is not straightforward. In particular, challenges of equifinality, evolutio…

Crops AgriculturalProcess (engineering)InferenceCropsEquifinalityBiologyModels BiologicalAgricultural scienceGeneticModelsMultidisciplinary approachevolutionAnimalsHumansNarrativeNeolithicDomesticationDomesticHybridizationagricultureAgriculturalinferencemodelNarrationMultidisciplinaryInterpretation (philosophy)The Modern View of Domestication Special FeatureBiologicalData scienceAnimals DomesticHybridization GeneticGeneric health relevanceStorytelling
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Correction for Frantz et al., Ancient pigs reveal a near-complete genomic turnover following their introduction to Europe

2020

Significance Archaeological evidence indicates that domestic pigs arrived in Europe, alongside farmers from the Near East ∼8,500 y ago, yet mitochondrial genomes of modern European pigs are derived from European wild boars. To address this conundrum, we obtained mitochondrial and nuclear data from modern and ancient Near Eastern and European pigs. Our analyses indicate that, aside from a coat color gene, most Near Eastern ancestry in the genomes of European domestic pigs disappeared over 3,000 y as a result of interbreeding with local wild boars. This implies that pigs were not domesticated independently in Europe, yet the first 2,500 y of human-mediated selection applied by Near Eastern Ne…

Gene FlowMultidisciplinarySwineLibrary scienceSkin PigmentationBiological SciencesCorrectionsDNA MitochondrialDomesticationEuropeMiddle EastAnthropologyevolutionAnimalsNeolithicDNA AncientHistory AncientPhylogeny
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Ancient pigs reveal a near-complete genomic turnover following their introduction to Europe

2019

International audience; Archaeological evidence indicates that pig domestication had begun by ∼10,500 y before the present (BP) in the Near East, and mitochondrial DNA (mtDNA) suggests that pigs arrived in Europe alongside farmers ∼8,500 y BP. A few thousand years after the introduction of Near Eastern pigs into Europe, however, their characteristic mtDNA signature disappeared and was replaced by haplotypes associated with European wild boars. This turnover could be accounted for by substantial gene flow from local Euro-pean wild boars, although it is also possible that European wild boars were domesticated independently without any genetic contribution from the Near East. To test these hyp…

0301 basic medicineSwine[SHS.ANTHRO-BIO]Humanities and Social Sciences/Biological anthropologySkin Pigmentation[SHS]Humanities and Social SciencesGene flowDomesticationddc:590BREEDSDOMESTIC PIGS/dk/atira/pure/subjectarea/asjc/1000HISTORY0601 history and archaeologyNeolithicHistory AncientPhylogenyMultidisciplinary060102 archaeologyINTROGRESSIONEurope ; pigs ; domestication ; genomesWILD06 humanities and the artsArchaeological evidenceGene flowEuropeSPREADCoatMitochondrial DNAEvolutionZoology930Locus (genetics)BiologyAnimal Breeding and GenomicsDNA MitochondrialMiddle East03 medical and health sciencesAnimalsFokkerij en GenomicaDNA AncientGeneralDomesticationddc:930HaplotypeDNA900 Geschichte und Geografie::930 Geschichte des Altertums (bis ca. 499) Archäologie::930 Geschichte des Altertums bis ca. 499 ArchäologieLONGSIZE030104 developmental biologydomestication evolution gene flow NeolithicWIAS
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Population dynamic of the extinct European aurochs: genetic evidence of a north-south differentiation pattern and no evidence of post-glacial expansi…

2010

International audience; Abstract Background The aurochs ( Bos primigenius ) was a large bovine that ranged over almost the entirety of the Eurasian continent and North Africa. It is the wild ancestor of the modern cattle ( Bos taurus ), and went extinct in 1627 probably as a consequence of human hunting and the progressive reduction of its habitat. To investigate in detail the genetic history of this species and to compare the population dynamics in different European areas, we analysed Bos primigenius remains from various sites across Italy. Results Fourteen samples provided ancient DNA fragments from the mitochondrial hypervariable region. Our data, jointly analysed with previously publis…

EntomologyEvolutionPopulationPopulation DynamicsZoologyBiologySettore BIO/08 - AntropologiaExtinction BiologicalDNA MitochondrialCoalescent theoryGenetic variationResearch articleQH359-425AnimalsGlacial periodeducationaurochancient DNAEcology Evolution Behavior and SystematicsPhylogenyeducation.field_of_studyExtinctionGeographyBayes TheoremRuminantsSequence Analysis DNAAurochsbiology.organism_classificationpopulation dynamichumanitiesEuropeAncient DNAGenetics PopulationHaplotypesItalyEvolutionary biologyAnimals; Bayes Theorem; DNA; Mitochondrial; Extinction; Biological; Genetics; Population; Geography; Haplotypes; Italy; Phylogeny; Population Dynamics; Ruminants; Sequence Analysis[SDE.BE]Environmental Sciences/Biodiversity and EcologyBMC Evolutionary Biology
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Pig domestication and human-mediated dispersal in western Eurasia revealed through ancient DNA and geometric morphometrics.

2013

Zooarcheological evidence suggests that pigs were domesticated in Southwest Asia ∼8,500 BC. They then spread across the Middle and Near East and westward into Europe alongside early agriculturalists. European pigs were either domesticated independently or more likely appeared so as a result of admixture between introduced pigs and European wild boar. As a result, European wild boar mtDNA lineages replaced Near Eastern/Anatolian mtDNA signatures in Europe and subsequently replaced indigenous domestic pig lineages in Anatolia. The specific details of these processes, however, remain unknown. To address questions related to early pig domestication, dispersal, and turnover in the Near East, we …

MESH: Sequence Analysis DNAsequence analysisSwineSus scrofa[SHS.ANTHRO-BIO]Humanities and Social Sciences/Biological anthropologyinsightsshapephylogeography01 natural sciences11. SustainabilityexpansionsMESH: AnimalswildNeolithicMESH: Swineagriculture0303 health sciencesKUL-METH-ArchaeologyMESH: AsiaPig domesticationmitochondrialEuropeDomestic pigMESH: PhylogeographyAnimals DomestichistoryMESH: Molareuropewild boar010506 paleontologyKUL-CoE-CASoriginsAsialikelihoodneolithic; phylogeography; pig domestication; wild boar; animal distribution; animals; animals domestic; Asia; DNA mitochondrial; Europe; humans; molar; phylogeography; sequence analysis DNA; Sus scrofa; SwineZoologypig domesticationfarmersBiologyNeolithic.Animal Breeding and GenomicsSettore BIO/08Wild boarDNA Mitochondrial03 medical and health sciencesWild boarBronze Agebiology.animalGeneticsdomesticAnimalsHumansFokkerij en GenomicaMESH: Animals DomesticDomesticationMolecular BiologyEcology Evolution Behavior and SystematicsDiscoveries030304 developmental biology0105 earth and related environmental sciencesMESH: Humans[SDV.GEN.GPO]Life Sciences [q-bio]/Genetics/Populations and Evolution [q-bio.PE]MESH: Animal DistributionMESH: DNA MitochondrialDNASequence Analysis DNAMolarMESH: Sus scrofaAncient DNAIron AgeWIASBiological dispersalMESH: EuropeAnimal DistributionChronology
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