0000000000591763

AUTHOR

Robert Kofler

showing 3 related works from this author

Chironomus riparius(Diptera) genome sequencing reveals the impact of minisatellite transposable elements on population divergence

2016

AbstractActive transposable elements (TEs) may result in divergent genomic insertion and abundance patterns among conspecific populations. Upon secondary contact, such divergent genetic backgrounds can theoretically give rise to classical Dobzhansky-Muller incompatibilities (DMI), a way how TEs can contribute to the evolution of endogenous genetic barriers and eventually population divergence. We investigated whether differential TE activity created endogenous selection pressures among conspecific populations of the non-biting midgeChironomus riparius,focussing on aChironomus-specific TE, the minisatellite-likeCla-element, whose activity is associated with speciation in the genus. Using an …

0106 biological sciences0301 basic medicineGenome Insectved/biology.organism_classification_rank.speciesPopulationGenomicsMinisatellite RepeatsBiologyPolymorphism Single Nucleotide010603 evolutionary biology01 natural sciencesGenomeChironomidaeDNA sequencingEvolution Molecular03 medical and health sciencesNegative selectionGeneticsAnimalseducationIn Situ Hybridization FluorescenceEcology Evolution Behavior and SystematicsLocal adaptationGeneticsChironomus ripariuseducation.field_of_studyPolytene chromosomeved/biologyfood and beveragesGenetics Population030104 developmental biologyMinisatelliteEvolutionary biologyDNA Transposable ElementsFemaleMolecular Ecology
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Evolutionary genomics can improve prediction of species' responses to climate change

2020

Abstract Global climate change (GCC) increasingly threatens biodiversity through the loss of species, and the transformation of entire ecosystems. Many species are challenged by the pace of GCC because they might not be able to respond fast enough to changing biotic and abiotic conditions. Species can respond either by shifting their range, or by persisting in their local habitat. If populations persist, they can tolerate climatic changes through phenotypic plasticity, or genetically adapt to changing conditions depending on their genetic variability and census population size to allow for de novo mutations. Otherwise, populations will experience demographic collapses and species may go ext…

eco‐evolutionary dynamicsComments and OpinionsRange (biology)Species distributionlcsh:EvolutionBiodiversityeco-evolutionary dynamics10127 Institute of Evolutionary Biology and Environmental Studiesmodelslcsh:QH359-425GeneticsComment and OpinionKeystone speciesEcology Evolution Behavior and SystematicsLocal adaptationgenomic quantitative geneticsbusiness.industryEnvironmental resource managementEnvironmental niche modellingGeographyBiodiversity loss570 Life sciences; biology590 Animals (Zoology)Biological dispersalbusinessGlobal biodiversity
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Data from: Chironomus riparius (Diptera) genome sequencing reveals the impact of minisatellite transposable elements on population divergence

2017

Active transposable elements (TEs) may result in divergent genomic insertion and abundance patterns among conspecific populations. Upon secondary contact, such divergent genetic backgrounds can theoretically give rise to classical Dobzhansky-Muller incompatibilities (DMI), thus contributing to the evolution of endogenous genetic barriers and eventually cause population divergence. We investigated differential TE abundance among conspecific populations of the non-biting midge Chironomus riparius and evaluated their potential role in causing endogenous genetic incompatibilities between these populations. We focussed on a Chironomus-specific TE, the minisatellite-like Cla-element, whose activi…

Pool-SeqChironomus ripariusendogenous selectionBLAST outputfood and beveragesgenome draftfilter duplicatesExonsgene sequencepresentLife sciencesmedicine and health careannotationinsect genomeMedicineTransposon
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