0000000000656942

AUTHOR

Andrés Garzón

0000-0003-4299-7198

showing 2 related works from this author

CRISPR sequences are sometimes erroneously translated and can contaminate public databases with spurious proteins containing spaced repeats

2020

© The Author(s) 2020.

Computer scienceGene predictionGenomicscomputer.software_genreGeneral Biochemistry Genetics and Molecular BiologyHomology (biology)03 medical and health sciencesAnnotation0302 clinical medicineCRISPRClustered Regularly Interspaced Short Palindromic RepeatsDatabases Protein030304 developmental biology0303 health sciencesDatabasePalindromeProteinsComputational geneGenomicsAcademicSubjects/SCI00960Original ArticleUniProtGeneral Agricultural and Biological Sciencescomputer030217 neurology & neurosurgeryInformation Systems
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AnABlast: Re-searching for Protein-Coding Sequences in Genomic Regions

2019

AnABlast is a computational tool that highlights protein-coding regions within intergenic and intronic DNA sequences which escape detection by standard gene prediction algorithms. DNA sequences with small protein-coding genes or exons, complex intron-containing genes, or degenerated DNA fragments are efficiently targeted by AnABlast. Furthermore, this algorithm is particularly useful in detecting protein-coding sequences with nonsignificant homologs to sequences in databases. AnABlast can be executed online at http://www.bioinfocabd.upo.es/anablast/ .

Fossil DNA sequencesProtein coding0303 health sciencesGene predictionCoding DNA sequences030302 biochemistry & molecular biologyComputational biologyBiologyGene findingDNA sequencing03 medical and health sciencesExonchemistry.chemical_compoundIntergenic regionchemistryHomologous chromosomeSmall genesGeneIn silico annotation toolDNA030304 developmental biology
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