AnABlast: Re-searching for Protein-Coding Sequences in Genomic Regions

6533b82afe1ef96bd128ccbf

RESEARCH PRODUCT

AnABlast: Re-searching for Protein-Coding Sequences in Genomic Regions

Alejandro Rubio Juan Jimenez Andrés Garzón Pablo Mier Antonio J. Pérez-pulido Miguel A. Andrade-navarro Carlos S. Casimiro-soriguer

subject

Fossil DNA sequences Protein coding 0303 health sciences Gene prediction Coding DNA sequences 030302 biochemistry & molecular biology Computational biology Biology Gene finding DNA sequencing 03 medical and health sciences Exon chemistry.chemical_compound Intergenic region chemistry Homologous chromosome Small genes Gene In silico annotation tool DNA 030304 developmental biology

description

AnABlast is a computational tool that highlights protein-coding regions within intergenic and intronic DNA sequences which escape detection by standard gene prediction algorithms. DNA sequences with small protein-coding genes or exons, complex intron-containing genes, or degenerated DNA fragments are efficiently targeted by AnABlast. Furthermore, this algorithm is particularly useful in detecting protein-coding sequences with nonsignificant homologs to sequences in databases. AnABlast can be executed online at http://www.bioinfocabd.upo.es/anablast/ .

year	journal	country	edition	language
2019-01-01

https://doi.org/10.1007/978-1-4939-9173-0_12

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