0000000000700930

AUTHOR

Tomas Marques-bonet

showing 4 related works from this author

The era of reference genomes in conservation genomics

2022

Progress in genome sequencing now enables the large-scale generation of reference genomes. Various international initiatives aim to generate reference genomes representing global biodiversity. These genomes provide unique insights into genomic diversity and architecture, thereby enabling comprehensive analyses of population and functional genomics, and are expected to revolutionize conservation genomics.

QH301 Biology580 Plants (Botany)Genetics -- ResearchEvolutionsbiologibiodiversity conservation; conservation genetics; ERGA; European Reference Genome AtlasConservation genetics; Biodiversity conservation; European Reference Genome Atlas; ERGAAnimal genome mappingudc:630*1GenomeGEERGA[SDV.BID.EVO]Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE][SDE.BE.BIOD]Environmental Sciences/Biodiversity and Ecology/domain_sde.be.biodERGA ; Biodiversity [MeSH] ; Genomics [MeSH] ; Ecology Evolution Behavior and Systematics ; conservation genetics ; Genome [MeSH] ; biodiversity conservation ; European Reference Genome Atlas3rd-DASGenomicsBiodiversityreferenčni genomi[SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM][SDE.BE.BEC]Environmental Sciences/Biodiversity and Ecology/domain_sde.be.becChemistry10121 Department of Systematic and Evolutionary BotanygenomikaGE Environmental Sciences:Informàtica::Aplicacions de la informàtica::Bioinformàtica [Àrees temàtiques de la UPC]biodiverzitetaSettore BIO/18 - GENETICAeducationQH426 GeneticsQH301European Reference Genome AtlasVDP::Matematikk og Naturvitenskap: 400::Basale biofag: 470[SDE.BE.EVO]Environmental Sciences/Biodiversity and Ecology/domain_sde.be.evoGeneticsconservation genetics ; biodiversity conservation ; European Reference Genome Atlas ; ERGAgenomi10211 Zurich-Basel Plant Science CenterGenomesGenetikBiologyQH426Ecology Evolution Behavior and SystematicsEvolutionary BiologyBiodiversity conservation; Conservation genetics; European Reference Genome AtlasAmbientaleEcologíaGenética1105 Ecology Evolution Behavior and Systematicsconservation geneticsWildlife conservation570 Life sciences; biologyHuman medicinebiodiversity conservationAnimal genetics[SDE.BE]Environmental Sciences/Biodiversity and EcologyGenètica
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The genome sequencing of an albino Western lowland gorilla reveals inbreeding in the wild

2013

This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License.-- et al.

0106 biological sciencesConservation geneticsMalegenotype phenotype correlationGorillaComputingMilieux_LEGALASPECTSOFCOMPUTINGarginineGenoma humà01 natural sciencesOculocutaneous albinism type 4single nucleotide polymorphismAlbinismegenetic variabilityGorillaInbreedinggenetic conservationGenetics0303 health sciencesGenomebiologyarticlecopy number variationHigh-Throughput Nucleotide SequencingSLC45A2 geneGenomicszygosityOculocutaneous albinismFloquet de neu (Goril·la)AlbinismFemaleBiotechnologyamino acid substitutionResearch ArticleSLC45A2Gorilla gorilla gorillaHeterozygoteAlbinismMolecular Sequence Datacomparative genomic hybridizationgene sequenceConservation010603 evolutionary biology03 medical and health sciencesWestern lowland gorillabiology.animalmedicineGeneticsheterozygosityAnimalsAmino Acid Sequencegene030304 developmental biologygene identificationWhole genome sequencingnonhumanGorilla gorillaMembrane Transport ProteinsSequence Analysis DNA15. Life on landbiology.organism_classificationmedicine.diseaseGenòmicaData_GENERALMutationbiology.proteinGenèticaoculocutaneous albinismglycineMicrosatellite RepeatsBMC Genomics
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Tracking Five Millennia of Horse Management with Extensive Ancient Genome Time Series

2019

Summary Horse domestication revolutionized warfare and accelerated travel, trade, and the geographic expansion of languages. Here, we present the largest DNA time series for a non-human organism to date, including genome-scale data from 149 ancient animals and 129 ancient genomes (≥1-fold coverage), 87 of which are new. This extensive dataset allows us to assess the modern legacy of past equestrian civilizations. We find that two extinct horse lineages existed during early domestication, one at the far western (Iberia) and the other at the far eastern range (Siberia) of Eurasia. None of these contributed significantly to modern diversity. We show that the influence of Persian-related horse …

MaleRange (biology)BiologíaBreeding horsesBreedingGenomeDomestication0302 clinical medicinePaleobiologíaComputingMilieux_MISCELLANEOUSHistory AncientPhylogenyhorses0303 health sciencesDiversityGenomeAncient DNAanimal breedingBiological EvolutionmuleshumanitiesManagementEuropeDomestication animalEquestrian civilizationsEthnologyFemalemanagementequestrian civilizationsExtinct lineagesAsia[SHS.ARCHEO]Humanities and Social Sciences/Archaeology and PrehistoryselectionMultiple allelesCaballosBiologyMulesArticleGeneral Biochemistry Genetics and Molecular Biologydiversity03 medical and health sciencesdomesticationCaballo de Przewalskiddc:570[SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry Molecular Biology/Genomics [q-bio.GN]AnimalsGenetic variationHorsesDNA AncientDomesticationSelectionancient DNAInstitut für Biochemie und Biologie030304 developmental biologyAnimal breedingSeries (stratigraphy)Genetic diversityGenetic VariationEquidaeGenéticaextinct lineagesAncient DNAdomestication ; selection ; equestrian civilizations ; horses ; ancient DNA ; mules ; animal breeding ; extinct lineages ; management ; diversityAnálisisancient DNA ; domestication ; animal breeding ; horses ; mules ; extinct lineages ; selection ; diversity ; management ; equestrian civilizations030217 neurology & neurosurgery
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A Common Genetic Origin for Early Farmers from Mediterranean Cardial and Central European LBK Cultures

2015

Olalde, Iñigo et al.

Mediterranean climatePopulation geneticsCardial wareCultureEthnic GroupEthnic groupsmigrationGenetic signatureBalkan peninsulaEthnicityHaplotype0601 history and archaeologyMediterranean regionNeolithicAntropologia prehistòrica2. Zero hunger0303 health scienceseducation.field_of_studyFarmersMiddle East060102 archaeologyAgriculture06 humanities and the artsEmigration and ImmigrationGenètica de poblacions humanes -- EuropaItalyHumanGenomic dataEuropean Continental Ancestry GroupPopulationBiologyDNA MitochondrialWhite People03 medical and health sciencesNeolíticPaleogenomicGeneticsHumansBase sequenceFarmerGenetic variationeducationMolecular BiologyDiscoveriesEcology Evolution Behavior and Systematics030304 developmental biologyBase SequenceHuman genomeGenome HumanSequence Analysis DNA15. Life on landArchaeologyGenetics PopulationpaleogenomicsHaplotypesSpainMolecular Biology and Evolution
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