Topological Information, Flux Balance Analysis, and Extreme Pathways Extraction for Metabolic Networks Behaviour Investigation

In recent years biological processes modeling and simulation have become two key issues in analyzing complex cellular systems. Information about metabolic networks is often incomplete, since a large portion of available data is ignored by its probabilistic nature. The main objective of this work is to investigate metabolic networks behavior in terms of their fault tolerance capabilities as random removal of network nodes and high-connectivity-degree node deletion aimed at compromising or modifying network activity. This paper proposes a software framework, namely CEllDataLaB, containing three tasks to perform the structural and functional analysis: topological analysis, flux balance analysi…