0000000000775104

AUTHOR

Concha Gil

showing 6 related works from this author

Spanish human proteome project: Dissection of chromosome 16

2013

11 páginas, 6 figuras.-- et al.

ProteomicsProteomeGene ExpressionBiologyProteomicsMicrobiologíaBiochemistryMass SpectrometryCell LineTranscriptome03 medical and health sciencesChromosome 16Human proteome projectHumansHuman proteome projectShotgun proteomicsDatabases ProteinTranscriptomics030304 developmental biologyGenetics0303 health sciencesGenome Human030302 biochemistry & molecular biologyProteinsGeneral ChemistryChromosome 163. Good healthProteomeHuman genomeSample collectionTranscriptomeChromosomes Human Pair 16
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Transcriptomic and Proteomic Approach for Understanding the Molecular Basis of Adaptation of Saccharomyces cerevisiae to Wine Fermentation

2006

ABSTRACT Throughout alcoholic fermentation, Saccharomyces cerevisiae cells have to cope with several stress conditions that could affect their growth and viability. In addition, the metabolic activity of yeast cells during this process leads to the production of secondary compounds that contribute to the organoleptic properties of the resulting wine. Commercial strains have been selected during the last decades for inoculation into the must to carry out the alcoholic fermentation on the basis of physiological traits, but little is known about the molecular basis of the fermentative behavior of these strains. In this work, we present the first transcriptomic and proteomic comparison between …

Saccharomyces cerevisiae ProteinsProteomeTranscription GeneticSaccharomyces cerevisiaeSulfur metabolismWineSaccharomyces cerevisiaeEthanol fermentationBiologyApplied Microbiology and BiotechnologyGene Expression Regulation FungalHeat shock proteinFermentation in winemakingWineEcologyGene Expression ProfilingPhysiology and Biotechnologybiology.organism_classificationAdaptation PhysiologicalYeastBiochemistryFermentationFermentationHeat-Shock ResponseFood ScienceBiotechnologyApplied and Environmental Microbiology
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A multicentric study to evaluate the use of relative retention times in targeted proteomics.

2016

Despite the maturity reached by targeted proteomic strategies, reliable and standardized protocols are urgently needed to enhance reproducibility among different laboratories and analytical platforms, facilitating a more widespread use in biomedical research. To achieve this goal, the use of dimensionless relative retention times (iRT), defined on the basis of peptide standard retention times (RT), has lately emerged as a powerful tool. The robustness, reproducibility and utility of this strategy were examined for the first time in a multicentric setting, involving 28 laboratories that included 24 of the Spanish network of proteomics laboratories (ProteoRed-ISCIII). According to the results…

0301 basic medicineMultiple reaction monitoringProteomicsBiomedical ResearchComputer scienceBiophysicsLiquid chromatographyContext (language use)BioinformaticsBiochemistry03 medical and health sciencesInter-laboratory validationTargeted proteomicsObserver VariationReproducibilityResearchReproducibility of ResultsAnalytical scienceReference StandardsStandardizationReproducibilityCell and molecular biologyTargeted proteomics030104 developmental biologyBiological significanceBiochemical engineeringRetention timeChromatography LiquidJournal of proteomics
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Surfing transcriptomic landscapes. A step beyond the annotation of chromosome 16 proteome

2013

All participating laboratories are members of ProteoRed-ISCIII.-- et al.

ProteomicsProteomeSequence analysisBioinformaticsBiologyMicrobiologíaENCODEProteomicsBiochemistryMass SpectrometryTranscriptome03 medical and health sciencesAnnotationChromosome 16RNA-Seq. ENCODEHuman proteome projectHumansHuman proteome projectTranscriptomics030304 developmental biologyGenetics0303 health sciencesSequence Analysis RNA030302 biochemistry & molecular biologyGeneral ChemistryChromosome 163. Good healthProteomeTranscriptomeChromosomes Human Pair 16Chromatography Liquid
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Molecular response of Saccharomyces cerevisiae wine and laboratory strains to high sugar stress conditions.

2010

One of the stress conditions that can affect Saccharomyces cerevisiae cells during their growth is osmotic stress. Under particular environments (for instance, during the production of alcoholic beverages) yeasts have to cope with osmotic stress caused by high sugar concentrations. Although the molecular changes and pathways involved in the response to saline or sorbitol stress are widely understood, less is known about how cells respond to high sugar concentrations. In this work we present a comprehensive study of the response to this form of stress which indicates important transcriptomic changes, especially in terms of the genes involved in both stress response and respiration, and the i…

Saccharomyces cerevisiae ProteinsOsmotic shockProteomeMutantSaccharomyces cerevisiaeWineSaccharomyces cerevisiaeBiologyMicrobiologychemistry.chemical_compoundStress PhysiologicalGene Expression Regulation FungalGene expressionPhosphorylationOligonucleotide Array Sequence AnalysisGene Expression ProfilingRNA FungalGeneral Medicinebiology.organism_classificationYeastGlucosechemistryBiochemistryMolecular ResponseProteomeMutationSorbitolMitogen-Activated Protein KinasesFood ScienceInternational journal of food microbiology
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General Statistical Framework for Quantitative Proteomics by Stable Isotope Labeling

2014

Pedro J. Navarro et al.

ProteomicsSaccharomyces cerevisiae ProteinsProteomeQuantitative proteomicsGene Expressionstable isotope labelingSaccharomyces cerevisiaeyeastOxygen Isotopescomputer.software_genreBiochemistryStatistical powerInterpretation (model theory)statistical analysisStable isotope labeling by amino acids in cell cultureQuantitative proteomicsData MiningModels StatisticalChromatographyChemistryMolecular Sequence AnnotationHydrogen PeroxideGeneral ChemistryVariance (accounting)Isotope LabelingStable Isotope LabelingBiological systemNull hypothesiscomputerData integrationJournal of Proteome Research
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