0000000000776437

AUTHOR

So Iwata

showing 4 related works from this author

The primary structural photoresponse of phytochrome proteins captured by a femtosecond X-ray laser

2019

Phytochrome proteins control the growth, reproduction, and photosynthesis of plants, fungi, and bacteria. Light is detected by a bilin cofactor, but it remains elusive how this leads to activation of the protein through structural changes. We present serial femtosecond X-ray crystallographic data of the chromophore-binding domains of a bacterial phytochrome at delay times of 1 ps and 10 ps after photoexcitation. The data reveal a twist of the D-ring, which leads to partial detachment of the chromophore from the protein. Unexpectedly, the conserved so-called pyrrole water is photodissociated from the chromophore, concomitant with movement of the A-ring and a key signaling aspartate. The chan…

DYNAMICSQH301-705.5ScienceEXCITED-STATEDIFFRACTION010402 general chemistryPhotosynthesisphytochromes01 natural sciencesCofactor03 medical and health scienceschemistry.chemical_compoundDeinococcus radioduransPROTON-TRANSFERREVEALSSFXCRYSTAL-STRUCTUREBiology (General)Bilin030304 developmental biologyISOMERIZATION0303 health sciencesbiologyPhytochromeD-RINGChemistryCRYSTALLOGRAPHYinitial photoresponsQRChromophore0104 chemical sciencesPhotoexcitationFemtosecondbiology.proteinBiophysics1182 Biochemistry cell and molecular biologyMedicine3111 BiomedicinevalokemiaproteiinitSignal transductionröntgenkristallografia
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Author response: The primary structural photoresponse of phytochrome proteins captured by a femtosecond X-ray laser

2020

X-ray laserPrimary (chemistry)Materials sciencePhytochromebusiness.industryFemtosecondOptoelectronicsbusiness
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The three-dimensional structure of Drosophila melanogaster (6–4) photolyase at room temperature

2021

A crystal structure of a photolyase at room temperature confirms the structural information obtained from cryogenic crystallography and paves the way for time-resolved studies of the photolyase at an X-ray free-electron laser.

MECHANISMMaterials scienceAbsorption spectroscopyDNA repairfotobiologia02 engineering and technologyCrystal structureREPAIR ACTIVITY03 medical and health sciencesCOLI DNA PHOTOLYASEX-RAY-DIFFRACTIONCryptochromeStructural BiologyAnimalsserial crystallographyCRYSTAL-STRUCTURECRYPTOCHROMEPhotolyaseSERIAL FEMTOSECOND CRYSTALLOGRAPHY030304 developmental biology0303 health sciencesCrystallographyflavoproteinsFADResolution (electron density)TemperaturebanaanikärpänenDNAkidetiede(6-4) photolyase021001 nanoscience & nanotechnologyResearch PapersRADICAL TRANSFER(6–4) photolyaseroom-temperature structureCrystallographyphotolyasesDrosophila melanogasterRECONSTITUTIONX-ray crystallography1182 Biochemistry cell and molecular biologylämpötilaproteiinit0210 nano-technologyDeoxyribodipyrimidine Photo-LyasePHOTOACTIVATIONVisible spectrumActa Crystallographica Section D Structural Biology
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Serial femtosecond crystallography reveals that photoactivation in a fluorescent protein proceeds via the hula twist mechanism

2023

Chromophore cis/trans photoisomerization is a fundamental process in chemistry and in the activation of many photosensitive proteins. A major task is understanding the effect of the protein environment on the efficiency and direction of this reaction compared to what is observed in the gas and solution phases. In this study, we set out to visualize the hula twist (HT) mechanism in a fluorescent protein, which is hypothesized to be the preferred mechanism in a spatially constrained binding pocket. We use a chlorine substituent to break the twofold symmetry of the embedded phenolic group of the chromophore and unambiguously identify the HT primary photoproduct. Through serial femtosecond crys…

fluoresenssiproteiinitvalokemiaGeneral Chemistry03 Chemical Sciences
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